Mutagenetix > Incidental Mutation

Incidental Mutation 'R7027:Tmc1'

546092

Institutional Source

Beutler Lab

Gene Symbol

Tmc1

Ensembl Gene

ENSMUSG00000024749

Gene Name

transmembrane channel-like gene family 1

Synonyms

Beethoven, Bth, 4933416G09Rik

MMRRC Submission

045128-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.157) question?

Stock #

R7027 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

20760822-20931566 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 20918267 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000040859 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039500]

AlphaFold

Q8R4P5

Predicted Effect

probably null
Transcript: ENSMUST00000039500

SMART Domains

Protein: ENSMUSP00000040859
Gene: ENSMUSG00000024749

Domain	Start	End	E-Value	Type
SCOP:d1eq1a_	2	95	3e-3	SMART
low complexity region	129	150	N/A	INTRINSIC
transmembrane domain	184	206	N/A	INTRINSIC
transmembrane domain	265	287	N/A	INTRINSIC
low complexity region	295	302	N/A	INTRINSIC
transmembrane domain	357	379	N/A	INTRINSIC
transmembrane domain	431	453	N/A	INTRINSIC
Pfam:TMC	512	627	2.6e-36	PFAM
transmembrane domain	632	654	N/A	INTRINSIC
transmembrane domain	693	715	N/A	INTRINSIC
low complexity region	738	754	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

98% (85/87)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is considered a member of a gene family predicted to encode transmembrane proteins. The specific function of this gene is unknown; however, it is known to be required for normal function of cochlear hair cells. Mutations in this gene have been associated with progressive postlingual hearing loss and profound prelingual deafness. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mutant mice are characterized by progressive degeneration of the cochlear inner hair cells and concomitant deafness. Different alleles causing progressive deafness or profound congenital deafness. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acoxl	A	T	2: 127,852,003 (GRCm39)	M102L	probably benign	Het
Adcy10	A	G	1: 165,345,815 (GRCm39)	E288G	probably damaging	Het
Agap1	A	G	1: 89,816,444 (GRCm39)	H748R	probably benign	Het
Ahsg	T	C	16: 22,711,007 (GRCm39)	L48P	probably damaging	Het
Ankrd27	A	G	7: 35,311,951 (GRCm39)	T394A	probably benign	Het
Apc	T	G	18: 34,445,129 (GRCm39)	V657G	probably damaging	Het
Arl2	T	C	19: 6,191,119 (GRCm39)	T5A	probably benign	Het
B020011L13Rik	A	G	1: 117,729,180 (GRCm39)	Y229C	probably benign	Het
B3gnt5	T	A	16: 19,588,740 (GRCm39)	S320T	probably damaging	Het
Bach1	G	A	16: 87,516,179 (GRCm39)	R240Q	probably benign	Het
BC107364	T	G	3: 96,348,057 (GRCm39)	R77S	unknown	Het
Brox	G	A	1: 183,065,750 (GRCm39)	P206L	possibly damaging	Het
Ccrl2	T	C	9: 110,884,953 (GRCm39)	K182E	probably benign	Het
Cd19	A	G	7: 126,009,671 (GRCm39)	V465A	possibly damaging	Het
Chrdl2	A	T	7: 99,671,240 (GRCm39)	Q126H	probably damaging	Het
Cnbd1	G	A	4: 18,862,063 (GRCm39)	P376S	probably benign	Het
Cobll1	A	G	2: 64,919,847 (GRCm39)	S1194P	probably benign	Het
Col6a4	T	C	9: 105,944,213 (GRCm39)	Y1087C	probably damaging	Het
Col9a2	G	A	4: 120,901,216 (GRCm39)		probably null	Het
Cyp4v3	A	G	8: 45,763,289 (GRCm39)	S341P	possibly damaging	Het
Dnah7a	T	A	1: 53,670,665 (GRCm39)	Y529F	probably benign	Het
Eif3b	C	T	5: 140,411,043 (GRCm39)	R165W	probably damaging	Het
Erlec1	C	A	11: 30,900,790 (GRCm39)	C126F	probably damaging	Het
Fads2b	A	G	2: 85,315,871 (GRCm39)	Y440H	probably damaging	Het
Fat2	T	C	11: 55,160,259 (GRCm39)	T3285A	probably benign	Het
Fat2	G	A	11: 55,172,677 (GRCm39)	R2679*	probably null	Het
Fbxo31	T	C	8: 122,305,224 (GRCm39)	T91A	probably damaging	Het
Fkbp5	A	G	17: 28,631,037 (GRCm39)	Y243H	probably damaging	Het
Flcn	C	T	11: 59,686,632 (GRCm39)	V374M	probably damaging	Het
Fndc5	A	G	4: 129,033,316 (GRCm39)	M128V	probably benign	Het
Gal3st1	A	G	11: 3,949,002 (GRCm39)	D403G	probably damaging	Het
Garem1	T	C	18: 21,263,051 (GRCm39)	N588D	probably benign	Het
Gas1	T	C	13: 60,324,047 (GRCm39)	T196A	probably damaging	Het
Gcn1	T	C	5: 115,754,605 (GRCm39)		probably null	Het
Gprc5d	T	G	6: 135,093,646 (GRCm39)	Q87P	probably damaging	Het
Grm1	A	G	10: 10,595,339 (GRCm39)	L763P	probably damaging	Het
Hivep2	G	T	10: 14,025,321 (GRCm39)	K2378N	probably damaging	Het
Hivep2	G	T	10: 14,025,322 (GRCm39)	D2379Y	probably damaging	Het
Itgad	A	G	7: 127,782,161 (GRCm39)	Y199C	probably damaging	Het
Itm2c	A	G	1: 85,834,206 (GRCm39)	I174V	probably benign	Het
Khdrbs2	A	G	1: 32,453,997 (GRCm39)	S128G	probably benign	Het
Map3k9	T	C	12: 81,777,398 (GRCm39)	T528A	probably benign	Het
Mmp11	G	A	10: 75,768,230 (GRCm39)		probably benign	Het
Mycbpap	T	A	11: 94,405,440 (GRCm39)	I30F	probably damaging	Het
Nfya	T	C	17: 48,696,340 (GRCm39)	T335A	probably benign	Het
Npat	T	A	9: 53,481,216 (GRCm39)	S1008T	possibly damaging	Het
Or10al5	G	A	17: 38,063,300 (GRCm39)	C185Y	probably damaging	Het
Or12e10	A	G	2: 87,641,060 (GRCm39)	T299A	possibly damaging	Het
Or5p69	A	T	7: 107,967,557 (GRCm39)	M287L	probably damaging	Het
Or6c219	C	T	10: 129,781,041 (GRCm39)	A297T	possibly damaging	Het
Osbpl10	T	C	9: 115,052,766 (GRCm39)	V613A	probably damaging	Het
Pcdhga8	T	C	18: 37,860,164 (GRCm39)	W407R	probably benign	Het
Pcdhgb4	A	G	18: 37,854,415 (GRCm39)	D270G	probably damaging	Het
Pde2a	A	C	7: 101,160,804 (GRCm39)	E918D	probably damaging	Het
Plekhg5	A	G	4: 152,198,431 (GRCm39)	D873G	probably benign	Het
Pno1	A	T	11: 17,158,880 (GRCm39)	S173T	possibly damaging	Het
Ppfia3	A	G	7: 45,004,160 (GRCm39)	I494T	possibly damaging	Het
Prkrip1	C	A	5: 136,210,267 (GRCm39)		probably benign	Het
Psma5	A	G	3: 108,172,484 (GRCm39)	I67V	probably benign	Het
Reep6	G	A	10: 80,169,799 (GRCm39)		probably null	Het
Rtl1	CTCTTCTTCTTCACCATCTTCCTCCTCCTCCCCTTCTTCTTCTTCACCATCTTCCTCCTCCTCCCCTTCTTCTTCTTCACCATCTTCCTCCTCCTC	CTCTTCTTCTTCACCATCTTCCTCCTCCTCCCCTTCTTCTTCTTCACCATCTTCCTCCTCCTC	12: 109,557,848 (GRCm39)		probably benign	Het
Scyl2	C	G	10: 89,481,323 (GRCm39)		probably null	Het
Sdk1	T	A	5: 142,082,481 (GRCm39)		probably null	Het
Senp5	C	A	16: 31,808,113 (GRCm39)	K380N	probably benign	Het
Slc22a14	A	T	9: 119,060,281 (GRCm39)		probably null	Het
Slc26a5	T	A	5: 22,021,972 (GRCm39)	T485S	possibly damaging	Het
Slc44a5	T	C	3: 153,959,356 (GRCm39)	I349T	probably benign	Het
Smarca5	T	C	8: 81,463,355 (GRCm39)	E71G	probably benign	Het
Smok2a	A	T	17: 13,444,666 (GRCm39)	H81L	probably damaging	Het
Snrnp200	A	G	2: 127,059,192 (GRCm39)	D388G	probably benign	Het
Tank	T	C	2: 61,483,766 (GRCm39)	V404A	probably benign	Het
Tek	A	G	4: 94,753,747 (GRCm39)	D1063G	probably damaging	Het
Tfap2a	C	T	13: 40,887,150 (GRCm39)	C16Y	probably benign	Het
Tnc	A	G	4: 63,902,826 (GRCm39)	F1484L	probably benign	Het
Tnfsf13	T	A	11: 69,575,958 (GRCm39)		probably null	Het
Tnrc6c	T	A	11: 117,624,444 (GRCm39)	S919T	probably damaging	Het
Trim17	C	A	11: 58,859,442 (GRCm39)	Q219K	probably benign	Het
Trim5	T	A	7: 103,914,875 (GRCm39)	H389L	probably benign	Het
Trio	T	A	15: 27,805,740 (GRCm39)	M583L	possibly damaging	Het
Ttll10	A	T	4: 156,120,258 (GRCm39)	H389Q	possibly damaging	Het
Usp24	T	C	4: 106,219,441 (GRCm39)	S546P	probably benign	Het
Vmn1r19	T	A	6: 57,381,475 (GRCm39)	Y9*	probably null	Het
Vmn2r50	T	A	7: 9,781,539 (GRCm39)	D402V	probably damaging	Het
Vmn2r93	C	A	17: 18,533,548 (GRCm39)	A484E	probably benign	Het
Vps13a	T	C	19: 16,642,028 (GRCm39)	T2200A	probably benign	Het
Wdr36	T	A	18: 32,974,958 (GRCm39)	H103Q	probably benign	Het
Zfp534	G	A	4: 147,759,667 (GRCm39)	T334I	possibly damaging	Het
Zfp804b	C	T	5: 6,820,372 (GRCm39)	S897N	probably benign	Het

Other mutations in Tmc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01639:Tmc1	APN	19	20,793,556 (GRCm39)	missense	probably damaging	1.00
IGL02104:Tmc1	APN	19	20,809,818 (GRCm39)	missense	probably benign	0.00
IGL02245:Tmc1	APN	19	20,776,556 (GRCm39)	missense	probably damaging	1.00
IGL02544:Tmc1	APN	19	20,884,327 (GRCm39)	missense	probably benign	0.04
IGL02699:Tmc1	APN	19	20,809,714 (GRCm39)	critical splice donor site	probably null
IGL02974:Tmc1	APN	19	20,878,208 (GRCm39)	missense	probably benign
IGL03194:Tmc1	APN	19	20,782,017 (GRCm39)	missense	probably damaging	1.00
dinner_bell	UTSW	19	20,772,880 (GRCm39)	missense	probably damaging	0.99
R0255:Tmc1	UTSW	19	20,766,951 (GRCm39)	missense	possibly damaging	0.93
R0381:Tmc1	UTSW	19	20,776,409 (GRCm39)	missense	probably damaging	1.00
R0655:Tmc1	UTSW	19	20,776,540 (GRCm39)	missense	probably damaging	1.00
R1404:Tmc1	UTSW	19	20,793,548 (GRCm39)	missense	possibly damaging	0.79
R1404:Tmc1	UTSW	19	20,793,548 (GRCm39)	missense	possibly damaging	0.79
R1496:Tmc1	UTSW	19	20,845,719 (GRCm39)	missense	probably damaging	1.00
R1542:Tmc1	UTSW	19	20,793,486 (GRCm39)	missense	probably damaging	1.00
R1773:Tmc1	UTSW	19	20,803,865 (GRCm39)	splice site	probably null
R1777:Tmc1	UTSW	19	20,793,473 (GRCm39)	critical splice donor site	probably null
R2067:Tmc1	UTSW	19	20,801,673 (GRCm39)	missense	possibly damaging	0.90
R2152:Tmc1	UTSW	19	20,834,039 (GRCm39)	missense	probably benign	0.01
R2180:Tmc1	UTSW	19	20,801,448 (GRCm39)	missense	probably damaging	0.96
R2204:Tmc1	UTSW	19	20,918,269 (GRCm39)	missense	probably benign	0.01
R2205:Tmc1	UTSW	19	20,918,269 (GRCm39)	missense	probably benign	0.01
R2285:Tmc1	UTSW	19	20,767,163 (GRCm39)	missense	probably damaging	0.96
R4505:Tmc1	UTSW	19	20,845,738 (GRCm39)	missense	probably benign	0.00
R4752:Tmc1	UTSW	19	20,804,013 (GRCm39)	missense	probably benign	0.35
R4975:Tmc1	UTSW	19	20,884,319 (GRCm39)	missense	probably damaging	0.96
R5040:Tmc1	UTSW	19	20,801,394 (GRCm39)	missense	possibly damaging	0.68
R5206:Tmc1	UTSW	19	20,804,024 (GRCm39)	missense	probably damaging	1.00
R5400:Tmc1	UTSW	19	20,781,966 (GRCm39)	missense	probably damaging	1.00
R5429:Tmc1	UTSW	19	20,766,986 (GRCm39)	missense	possibly damaging	0.72
R6200:Tmc1	UTSW	19	20,766,954 (GRCm39)	missense	possibly damaging	0.53
R6784:Tmc1	UTSW	19	20,805,015 (GRCm39)	critical splice donor site	probably null
R6796:Tmc1	UTSW	19	20,776,400 (GRCm39)	missense	probably damaging	1.00
R6808:Tmc1	UTSW	19	20,772,880 (GRCm39)	missense	probably damaging	0.99
R6812:Tmc1	UTSW	19	20,878,225 (GRCm39)	missense	probably damaging	1.00
R6834:Tmc1	UTSW	19	20,772,974 (GRCm39)	nonsense	probably null
R6978:Tmc1	UTSW	19	20,781,999 (GRCm39)	missense	probably damaging	1.00
R6986:Tmc1	UTSW	19	20,801,647 (GRCm39)	missense	probably benign	0.02
R7378:Tmc1	UTSW	19	20,845,753 (GRCm39)	missense	probably damaging	0.98
R7520:Tmc1	UTSW	19	20,776,542 (GRCm39)	missense	probably damaging	0.99
R7573:Tmc1	UTSW	19	20,884,372 (GRCm39)	missense	probably damaging	0.98
R7825:Tmc1	UTSW	19	20,782,009 (GRCm39)	missense	possibly damaging	0.55
R8024:Tmc1	UTSW	19	20,878,181 (GRCm39)	missense	probably damaging	1.00
R8073:Tmc1	UTSW	19	20,845,725 (GRCm39)	missense	probably benign	0.08
R8786:Tmc1	UTSW	19	20,803,953 (GRCm39)	missense	probably damaging	1.00
R8791:Tmc1	UTSW	19	20,767,209 (GRCm39)	missense	probably benign	0.00
R8969:Tmc1	UTSW	19	20,793,593 (GRCm39)	missense	probably damaging	1.00
R8973:Tmc1	UTSW	19	20,878,215 (GRCm39)	missense	probably benign
R9429:Tmc1	UTSW	19	20,793,548 (GRCm39)	missense	possibly damaging	0.79
R9493:Tmc1	UTSW	19	20,801,644 (GRCm39)	missense	probably benign	0.00
Z1176:Tmc1	UTSW	19	20,803,870 (GRCm39)	missense	probably null	1.00
Z1177:Tmc1	UTSW	19	20,801,346 (GRCm39)	missense	probably damaging	1.00
Z1177:Tmc1	UTSW	19	20,772,972 (GRCm39)	missense	possibly damaging	0.47

Predicted Primers

PCR Primer
(F):5'- TGGTACCTTTTAATCTCAGCATCTG -3'
(R):5'- AGGATGATCAGCTGACTTGC -3'

Sequencing Primer
(F):5'- CCCAAATCATAATCTCCTAAGAGTTC -3'
(R):5'- ATGATCAGCTGACTTGCTTATTG -3'

Posted On

2019-05-13