Mutagenetix > Incidental Mutation

Incidental Mutation 'R7028:Asxl1'

546104

Institutional Source

Beutler Lab

Gene Symbol

Asxl1

Ensembl Gene

ENSMUSG00000042548

Gene Name

additional sex combs like 1

Synonyms

MMRRC Submission

045129-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7028 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

153345829-153404007 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 153400107 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 859 (L859P)

Ref Sequence

ENSEMBL: ENSMUSP00000154224 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109790] [ENSMUST00000227428]

AlphaFold

P59598

Predicted Effect

probably benign
Transcript: ENSMUST00000109790
AA Change: L860P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000105413
Gene: ENSMUSG00000042548
AA Change: L860P

Domain	Start	End	E-Value	Type
Pfam:HARE-HTH	11	83	1.6e-20	PFAM
low complexity region	199	209	N/A	INTRINSIC
Pfam:ASXH	236	361	5.9e-40	PFAM
low complexity region	411	422	N/A	INTRINSIC
low complexity region	639	667	N/A	INTRINSIC
low complexity region	705	716	N/A	INTRINSIC
low complexity region	848	860	N/A	INTRINSIC
low complexity region	986	1000	N/A	INTRINSIC
Pfam:PHD_3	1446	1512	6.3e-23	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227428
AA Change: L859P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is similar to the Drosophila additional sex combs gene, which encodes a chromatin-binding protein required for normal determination of segment identity in the developing embryo. The protein is a member of the Polycomb group of proteins, which are necessary for the maintenance of stable repression of homeotic and other loci. The protein is thought to disrupt chromatin in localized areas, enhancing transcription of certain genes while repressing the transcription of other genes. The protein encoded by this gene functions as a ligand-dependent co-activator for retinoic acid receptor in cooperation with nuclear receptor coactivator 1. Mutations in this gene are associated with myelodysplastic syndromes and chronic myelomonocytic leukemia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2009]
PHENOTYPE: Disruption of this gene causes alterations in lymphocyte development in adult mice. Mice homozygous for a different knock-out allele exhibit complete lethality. Mice heterozygous for this allele exhibit eye opacity and abnormal vertebrae morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	G	2: 69,265,675 (GRCm38)	I804T	probably benign	Het
Abcb1b	A	T	5: 8,805,441 (GRCm38)	E25V	probably damaging	Het
Adamts9	G	T	6: 92,909,793 (GRCm38)	Y355*	probably null	Het
Akp3	A	G	1: 87,126,778 (GRCm38)	M303V	probably benign	Het
Ankrd35	A	T	3: 96,683,334 (GRCm38)	E312V	possibly damaging	Het
Arhgap40	T	C	2: 158,531,374 (GRCm38)		probably null	Het
Atat1	A	G	17: 35,910,005 (GRCm38)	F11L	probably benign	Het
Bach1	G	A	16: 87,719,291 (GRCm38)	R240Q	probably benign	Het
Ccdc7a	A	T	8: 128,881,594 (GRCm38)	H943Q	unknown	Het
Cep135	A	G	5: 76,616,848 (GRCm38)	T558A	probably benign	Het
Cfap99	A	G	5: 34,301,519 (GRCm38)	E86G	possibly damaging	Het
Cfhr2	C	T	1: 139,831,063 (GRCm38)		probably null	Het
Cmtm1	CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT	CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT	8: 104,309,470 (GRCm38)		probably benign	Het
Col17a1	G	A	19: 47,652,183 (GRCm38)	P992L	probably damaging	Het
Col7a1	C	T	9: 108,963,263 (GRCm38)	Q1294*	probably null	Het
Coq8b	T	A	7: 27,239,868 (GRCm38)	C148S	probably damaging	Het
Csmd2	A	G	4: 128,277,228 (GRCm38)	N338S		Het
Cspg5	T	A	9: 110,246,891 (GRCm38)	S232T	possibly damaging	Het
Cyp2c67	A	G	19: 39,639,897 (GRCm38)	V201A	possibly damaging	Het
Dlgap3	G	A	4: 127,195,517 (GRCm38)	R302H	possibly damaging	Het
Dpy19l2	T	C	9: 24,628,251 (GRCm38)	I469V	probably benign	Het
Fam135b	T	C	15: 71,471,563 (GRCm38)	D401G	probably damaging	Het
Gabbr1	G	T	17: 37,064,737 (GRCm38)	G453*	probably null	Het
Gclc	C	A	9: 77,788,216 (GRCm38)	A440D	probably damaging	Het
Glyat	T	C	19: 12,650,359 (GRCm38)	I106T	probably benign	Het
Gm12185	T	C	11: 48,908,244 (GRCm38)	N474S	possibly damaging	Het
Gm17079	T	C	14: 51,693,037 (GRCm38)	H117R		Het
Gm884	C	T	11: 103,614,537 (GRCm38)	A26T	probably benign	Het
Ildr2	A	G	1: 166,303,529 (GRCm38)	D318G	probably damaging	Het
Kcnd2	G	A	6: 21,216,178 (GRCm38)		probably benign	Het
Kif19a	C	T	11: 114,781,208 (GRCm38)	T207M	probably damaging	Het
Kif3a	G	T	11: 53,586,906 (GRCm38)	G401*	probably null	Het
Lactbl1	T	A	4: 136,632,975 (GRCm38)	L155Q	probably damaging	Het
Lrp1b	T	A	2: 41,246,011 (GRCm38)	D1649V	probably benign	Het
Map2k1	A	G	9: 64,193,823 (GRCm38)	V191A	probably benign	Het
Mdm4	A	T	1: 133,003,809 (GRCm38)	C165S	probably benign	Het
Med27	G	A	2: 29,509,434 (GRCm38)	W92*	probably null	Het
Muc20	A	T	16: 32,794,246 (GRCm38)	S254T	probably benign	Het
Myh1	A	G	11: 67,220,421 (GRCm38)	E1562G	possibly damaging	Het
Nlrp2	C	G	7: 5,328,572 (GRCm38)	R275P	possibly damaging	Het
Notch2	T	A	3: 98,102,387 (GRCm38)	N543K	probably damaging	Het
Nup214	T	A	2: 32,034,156 (GRCm38)	S1566T	probably benign	Het
Nxnl1	T	G	8: 71,562,793 (GRCm38)	E157A	possibly damaging	Het
Obscn	A	G	11: 59,079,133 (GRCm38)	L61P	probably damaging	Het
Ogg1	A	T	6: 113,329,276 (GRCm38)	I145F	probably damaging	Het
Olfr1359	A	G	13: 21,703,270 (GRCm38)	K90E	possibly damaging	Het
Olfr453	G	A	6: 42,744,403 (GRCm38)	R122H	probably benign	Het
Olfr572	T	C	7: 102,927,942 (GRCm38)	F105L	probably damaging	Het
Olfr976	T	C	9: 39,956,345 (GRCm38)	T197A	probably benign	Het
Pclo	A	G	5: 14,713,447 (GRCm38)	D3978G	unknown	Het
Pla2g4e	T	G	2: 120,170,195 (GRCm38)	D687A	probably damaging	Het
Pla2r1	T	C	2: 60,458,393 (GRCm38)	K632E	probably damaging	Het
Plg	A	T	17: 12,391,836 (GRCm38)	Q212L	probably damaging	Het
Poldip3	A	T	15: 83,131,497 (GRCm38)	N306K	probably damaging	Het
Pspn	A	G	17: 56,999,978 (GRCm38)	L13P	possibly damaging	Het
Ralgapa1	T	C	12: 55,758,059 (GRCm38)	E484G	probably damaging	Het
Rbmxl1	G	T	8: 78,506,657 (GRCm38)	T19K	probably damaging	Het
Rora	G	A	9: 69,196,083 (GRCm38)	V31I	possibly damaging	Het
Skint5	C	A	4: 113,940,839 (GRCm38)	W182C	probably damaging	Het
Spata31d1c	A	T	13: 65,036,063 (GRCm38)	Q473L	probably damaging	Het
Tesk2	G	A	4: 116,802,687 (GRCm38)	W334*	probably null	Het
Tmem67	C	A	4: 12,075,484 (GRCm38)	V277L	probably benign	Het
Trhde	A	G	10: 114,518,177 (GRCm38)	M537T	probably damaging	Het
Ttc30a2	A	T	2: 75,976,269 (GRCm38)	L633*	probably null	Het
Tubb6	G	A	18: 67,401,911 (GRCm38)	M293I	probably benign	Het
Ube2ql1	A	T	13: 69,738,754 (GRCm38)	L196Q	probably damaging	Het
Ubn1	A	T	16: 5,055,324 (GRCm38)	N70I	probably damaging	Het
Ubtf	A	T	11: 102,314,980 (GRCm38)	S40T	probably benign	Het
Virma	C	T	4: 11,519,249 (GRCm38)	A782V	possibly damaging	Het
Xdh	G	T	17: 73,943,873 (GRCm38)	T28K	probably damaging	Het
Xpo4	A	G	14: 57,597,051 (GRCm38)	S691P	probably benign	Het
Zfat	A	C	15: 68,180,452 (GRCm38)	F491V	probably damaging	Het
Zfp623	T	G	15: 75,948,305 (GRCm38)	V370G	probably damaging	Het

Other mutations in Asxl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01409:Asxl1	APN	2	153,392,940 (GRCm38)	splice site	probably benign
IGL01432:Asxl1	APN	2	153,400,205 (GRCm38)	missense	probably benign	0.38
IGL01543:Asxl1	APN	2	153,401,484 (GRCm38)	missense	probably benign	0.11
IGL02355:Asxl1	APN	2	153,401,786 (GRCm38)	missense	probably benign	0.34
IGL02362:Asxl1	APN	2	153,401,786 (GRCm38)	missense	probably benign	0.34
IGL02645:Asxl1	APN	2	153,392,857 (GRCm38)	missense	possibly damaging	0.94
IGL02696:Asxl1	APN	2	153,400,195 (GRCm38)	nonsense	probably null
IGL03365:Asxl1	APN	2	153,401,754 (GRCm38)	missense	probably damaging	1.00
IGL03372:Asxl1	APN	2	153,400,413 (GRCm38)	missense	probably damaging	0.99
IGL03377:Asxl1	APN	2	153,396,780 (GRCm38)	missense	probably damaging	1.00
astrophel	UTSW	2	153,400,106 (GRCm38)	missense	possibly damaging	0.75
hairbrush	UTSW	2	153,400,724 (GRCm38)	missense	possibly damaging	0.55
R0044:Asxl1	UTSW	2	153,400,209 (GRCm38)	missense	probably benign	0.06
R0044:Asxl1	UTSW	2	153,400,209 (GRCm38)	missense	probably benign	0.06
R0600:Asxl1	UTSW	2	153,399,904 (GRCm38)	missense	probably benign	0.00
R0659:Asxl1	UTSW	2	153,400,724 (GRCm38)	missense	possibly damaging	0.55
R0661:Asxl1	UTSW	2	153,400,724 (GRCm38)	missense	possibly damaging	0.55
R0684:Asxl1	UTSW	2	153,397,522 (GRCm38)	missense	probably damaging	1.00
R1606:Asxl1	UTSW	2	153,400,455 (GRCm38)	missense	probably damaging	0.99
R1747:Asxl1	UTSW	2	153,393,454 (GRCm38)	missense	possibly damaging	0.86
R1796:Asxl1	UTSW	2	153,401,606 (GRCm38)	missense	probably benign	0.31
R1914:Asxl1	UTSW	2	153,401,906 (GRCm38)	missense	probably damaging	1.00
R2099:Asxl1	UTSW	2	153,352,267 (GRCm38)	missense	possibly damaging	0.95
R2373:Asxl1	UTSW	2	153,401,900 (GRCm38)	missense	probably benign	0.13
R2910:Asxl1	UTSW	2	153,401,039 (GRCm38)	missense	probably benign	0.00
R3620:Asxl1	UTSW	2	153,357,155 (GRCm38)	missense	probably damaging	1.00
R3701:Asxl1	UTSW	2	153,399,344 (GRCm38)	missense	probably benign	0.04
R4200:Asxl1	UTSW	2	153,400,106 (GRCm38)	missense	possibly damaging	0.75
R4773:Asxl1	UTSW	2	153,401,985 (GRCm38)	missense	probably damaging	1.00
R4902:Asxl1	UTSW	2	153,399,831 (GRCm38)	missense	probably benign	0.02
R5100:Asxl1	UTSW	2	153,397,931 (GRCm38)	missense	probably damaging	1.00
R5102:Asxl1	UTSW	2	153,400,955 (GRCm38)	missense	probably benign	0.00
R5166:Asxl1	UTSW	2	153,401,121 (GRCm38)	missense	probably damaging	1.00
R5421:Asxl1	UTSW	2	153,399,584 (GRCm38)	missense	probably benign	0.04
R5701:Asxl1	UTSW	2	153,399,489 (GRCm38)	missense	probably damaging	1.00
R5861:Asxl1	UTSW	2	153,399,390 (GRCm38)	missense	probably damaging	0.99
R5973:Asxl1	UTSW	2	153,402,011 (GRCm38)	missense	probably damaging	0.97
R6384:Asxl1	UTSW	2	153,391,824 (GRCm38)	critical splice donor site	probably null
R7023:Asxl1	UTSW	2	153,400,549 (GRCm38)	missense	probably benign	0.00
R7176:Asxl1	UTSW	2	153,401,988 (GRCm38)	missense	probably damaging	1.00
R7297:Asxl1	UTSW	2	153,397,435 (GRCm38)	missense	probably benign	0.01
R7378:Asxl1	UTSW	2	153,401,993 (GRCm38)	missense	probably damaging	1.00
R7464:Asxl1	UTSW	2	153,397,785 (GRCm38)	missense	probably benign	0.01
R7678:Asxl1	UTSW	2	153,400,652 (GRCm38)	missense	probably damaging	1.00
R7686:Asxl1	UTSW	2	153,391,614 (GRCm38)	missense	probably damaging	1.00
R7789:Asxl1	UTSW	2	153,400,023 (GRCm38)	missense	probably benign	0.00
R7838:Asxl1	UTSW	2	153,396,813 (GRCm38)	missense	probably damaging	1.00
R7898:Asxl1	UTSW	2	153,399,934 (GRCm38)	missense	possibly damaging	0.65
R8281:Asxl1	UTSW	2	153,399,401 (GRCm38)	missense	probably damaging	1.00
R8354:Asxl1	UTSW	2	153,393,425 (GRCm38)	missense	probably benign	0.40
R8383:Asxl1	UTSW	2	153,393,719 (GRCm38)	missense	probably damaging	1.00
R8995:Asxl1	UTSW	2	153,393,966 (GRCm38)	missense	probably damaging	1.00
R9183:Asxl1	UTSW	2	153,397,920 (GRCm38)	missense	probably damaging	0.99
X0024:Asxl1	UTSW	2	153,401,985 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCATTCCCTCAGAGAGTAGTTCTG -3'
(R):5'- TGGGGCACACTTTCTGTTGC -3'

Sequencing Primer
(F):5'- CCTCAGAGAGTAGTTCTGGACGG -3'
(R):5'- TGCAATGAGAGGAACAGCTCTCTC -3'

Posted On

2019-05-13