Mutagenetix > Incidental Mutation

Incidental Mutation 'R0610:Sytl2'

54617

Institutional Source

Beutler Lab

Gene Symbol

Sytl2

Ensembl Gene

ENSMUSG00000030616

Gene Name

synaptotagmin-like 2

Synonyms

Slp2-b, Slp2-c, Slp2-d, Slp2, Slp2-a

MMRRC Submission

038799-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.302) question?

Stock #

R0610 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

89951460-90059927 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

A to T at 90030061 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000147191 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107210] [ENSMUST00000107211] [ENSMUST00000190731] [ENSMUST00000190837] [ENSMUST00000208720]

AlphaFold

Q99N50

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000098310

SMART Domains

Protein: ENSMUSP00000095912
Gene: ENSMUSG00000030616

Domain	Start	End	E-Value	Type
low complexity region	938	966	N/A	INTRINSIC
C2	990	1095	4.59e-15	SMART
C2	1139	1242	6.44e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107210

SMART Domains

Protein: ENSMUSP00000102828
Gene: ENSMUSG00000030616

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	5	59	5.5e-9	PFAM
low complexity region	192	205	N/A	INTRINSIC
low complexity region	317	328	N/A	INTRINSIC
C2	620	725	4.59e-15	SMART
C2	769	872	6.44e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107211

SMART Domains

Protein: ENSMUSP00000102829
Gene: ENSMUSG00000030616

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	5	59	5.6e-9	PFAM
low complexity region	192	205	N/A	INTRINSIC
low complexity region	317	328	N/A	INTRINSIC
low complexity region	592	620	N/A	INTRINSIC
C2	644	749	4.59e-15	SMART
C2	793	896	6.44e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000190365

Predicted Effect

probably benign
Transcript: ENSMUST00000190731

SMART Domains

Protein: ENSMUSP00000139865
Gene: ENSMUSG00000030616

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	5	59	5.8e-9	PFAM
low complexity region	192	205	N/A	INTRINSIC
low complexity region	317	328	N/A	INTRINSIC
low complexity region	608	636	N/A	INTRINSIC
C2	660	765	4.59e-15	SMART
C2	809	912	6.44e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000190837

SMART Domains

Protein: ENSMUSP00000139450
Gene: ENSMUSG00000030616

Domain	Start	End	E-Value	Type
Pfam:FYVE_2	5	59	5.6e-9	PFAM
low complexity region	82	93	N/A	INTRINSIC
low complexity region	165	178	N/A	INTRINSIC
low complexity region	290	301	N/A	INTRINSIC
low complexity region	581	609	N/A	INTRINSIC
C2	633	738	4.59e-15	SMART
C2	782	885	6.44e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207431

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207629

Predicted Effect

probably benign
Transcript: ENSMUST00000208720

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207455

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.4%
20x: 94.7%

Validation Efficiency

99% (97/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a synaptotagmin-like protein (SLP) that belongs to a C2 domain-containing protein family. The SLP homology domain (SHD) of this protein has been shown to specifically bind the GTP-bound form of Ras-related protein Rab-27A (RAB27A). This protein plays a role in RAB27A-dependent vesicle trafficking and controls melanosome distribution in the cell periphery. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Jun 2009]
PHENOTYPE: Mice homozygous for a null allele display abnormal gastric surface mucus cell morphology and reduced basal mucin secretion from gastric cells [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	A	T	7: 40,642,480 (GRCm39)	T141S	probably benign	Het
4930578I06Rik	G	A	14: 64,223,714 (GRCm39)	R21*	probably null	Het
Abca15	A	G	7: 119,965,009 (GRCm39)	E757G	possibly damaging	Het
Abca5	T	C	11: 110,192,353 (GRCm39)	T720A	probably benign	Het
Actr5	T	A	2: 158,474,376 (GRCm39)		probably null	Het
Adgrl3	T	C	5: 81,841,563 (GRCm39)		probably benign	Het
Adra1a	A	G	14: 66,875,241 (GRCm39)	D72G	probably damaging	Het
Ahcyl	T	C	16: 45,974,264 (GRCm39)	E371G	probably damaging	Het
Ahnak	G	T	19: 8,985,242 (GRCm39)	L2175F	probably benign	Het
AK157302	A	G	13: 21,679,833 (GRCm39)	T120A	possibly damaging	Het
Apol7a	G	A	15: 77,273,454 (GRCm39)	A336V	probably benign	Het
Asic1	C	A	15: 99,596,780 (GRCm39)	H525Q	probably benign	Het
Atxn7l2	T	C	3: 108,112,090 (GRCm39)	D335G	possibly damaging	Het
Bpgm	G	T	6: 34,481,284 (GRCm39)	R227L	possibly damaging	Het
Calm4	T	A	13: 3,888,320 (GRCm39)	V142E	possibly damaging	Het
Catsperg1	A	T	7: 28,890,044 (GRCm39)	L721Q	probably damaging	Het
Cdh26	A	G	2: 178,091,691 (GRCm39)	I83M	probably damaging	Het
Cep295	A	C	9: 15,234,050 (GRCm39)	S2249A	possibly damaging	Het
Cfhr4	G	A	1: 139,629,584 (GRCm39)	T799I	probably benign	Het
Cln3	A	G	7: 126,179,361 (GRCm39)	F139L	probably damaging	Het
Cmpk2	T	A	12: 26,528,055 (GRCm39)	L424Q	possibly damaging	Het
Col12a1	A	T	9: 79,615,130 (GRCm39)	V53E	probably benign	Het
Csmd1	G	A	8: 15,968,208 (GRCm39)	R3140C	possibly damaging	Het
Dagla	A	G	19: 10,248,922 (GRCm39)	W11R	probably damaging	Het
Dbx2	C	T	15: 95,522,778 (GRCm39)	V310M	probably benign	Het
Disp2	T	A	2: 118,622,717 (GRCm39)	C1150S	probably benign	Het
Dock3	T	C	9: 106,900,987 (GRCm39)	D326G	probably damaging	Het
Dph1	G	T	11: 75,076,783 (GRCm39)		probably benign	Het
Dyrk1b	C	A	7: 27,886,059 (GRCm39)	T594K	probably damaging	Het
Evx2	C	A	2: 74,486,331 (GRCm39)	A353S	probably benign	Het
Garin1b	T	A	6: 29,326,576 (GRCm39)	V231E	probably benign	Het
Greb1	A	C	12: 16,746,443 (GRCm39)	S1276A	probably benign	Het
Hhipl1	T	A	12: 108,285,661 (GRCm39)	C490*	probably null	Het
Hmmr	G	T	11: 40,606,729 (GRCm39)	T231K	probably damaging	Het
Hspa4l	A	C	3: 40,733,832 (GRCm39)	E526D	probably benign	Het
Ibsp	A	G	5: 104,458,000 (GRCm39)	E179G	probably benign	Het
Ift140	C	T	17: 25,254,777 (GRCm39)	A150V	probably benign	Het
Igf2bp2	A	G	16: 21,889,059 (GRCm39)	S416P	probably benign	Het
Ighe	T	C	12: 113,235,363 (GRCm39)	K294E	unknown	Het
Ino80	G	A	2: 119,213,441 (GRCm39)	R1249C	probably damaging	Het
Iqca1	C	A	1: 90,070,453 (GRCm39)	G133V	probably null	Het
Kng2	T	A	16: 22,819,344 (GRCm39)	N231Y	possibly damaging	Het
Lca5	A	T	9: 83,281,792 (GRCm39)	C331S	probably benign	Het
Lrrc1	A	G	9: 77,379,488 (GRCm39)	I101T	possibly damaging	Het
Lrrk2	A	T	15: 91,699,619 (GRCm39)	I2489L	probably benign	Het
Lyz3	A	G	10: 117,073,635 (GRCm39)	F66S	probably benign	Het
Mapk9	A	C	11: 49,754,400 (GRCm39)	N51T	probably benign	Het
Marf1	C	T	16: 13,960,398 (GRCm39)	A549T	probably damaging	Het
Nek2	T	A	1: 191,554,627 (GRCm39)	V113D	probably damaging	Het
Nr4a3	C	A	4: 48,051,903 (GRCm39)	A248E	probably benign	Het
Nrp1	T	C	8: 129,229,099 (GRCm39)	I859T	probably damaging	Het
Olfm5	A	T	7: 103,803,652 (GRCm39)	Y195*	probably null	Het
Or13j1	T	A	4: 43,706,400 (GRCm39)	H56L	possibly damaging	Het
Or1n2	T	A	2: 36,797,671 (GRCm39)	W238R	probably damaging	Het
Or8g35	A	G	9: 39,381,119 (GRCm39)	L301P	probably damaging	Het
Oxtr	C	T	6: 112,454,138 (GRCm39)	R42Q	probably benign	Het
Pcnx2	A	G	8: 126,566,426 (GRCm39)	W1006R	probably damaging	Het
Pdpk1	T	C	17: 24,317,145 (GRCm39)		probably null	Het
Ryr2	T	A	13: 11,637,838 (GRCm39)	H3731L	probably damaging	Het
Sdr16c5	T	G	4: 4,016,116 (GRCm39)	E103D	possibly damaging	Het
Setdb2	A	C	14: 59,654,919 (GRCm39)	S324A	possibly damaging	Het
Slc17a3	C	T	13: 24,039,841 (GRCm39)	S293F	probably damaging	Het
Slc17a8	A	T	10: 89,412,488 (GRCm39)	I499K	probably damaging	Het
Slc2a9	T	A	5: 38,537,285 (GRCm39)	I389F	probably damaging	Het
Slc30a1	T	C	1: 191,641,536 (GRCm39)	V394A	probably damaging	Het
Slc41a2	A	G	10: 83,119,592 (GRCm39)	I390T	possibly damaging	Het
Slco1a1	A	G	6: 141,864,187 (GRCm39)		probably null	Het
Slit2	A	G	5: 48,433,016 (GRCm39)	K1053E	possibly damaging	Het
Smarca2	T	A	19: 26,668,791 (GRCm39)	L930Q	probably damaging	Het
Snx6	T	C	12: 54,798,574 (GRCm39)	H387R	probably damaging	Het
Sox5	A	T	6: 143,779,165 (GRCm39)	M622K	possibly damaging	Het
Ston1	C	A	17: 88,942,709 (GRCm39)	N38K	possibly damaging	Het
Strbp	C	T	2: 37,474,089 (GRCm39)	V658I	probably damaging	Het
Strn3	T	C	12: 51,657,231 (GRCm39)		probably null	Het
Suco	T	G	1: 161,687,072 (GRCm39)	D96A	probably benign	Het
Suco	A	G	1: 161,691,601 (GRCm39)		probably benign	Het
Tmem41b	T	A	7: 109,580,290 (GRCm39)	M25L	probably benign	Het
Tmem41b	T	A	7: 109,580,292 (GRCm39)	D91V	probably damaging	Het
Tmem50b	C	T	16: 91,380,174 (GRCm39)	A68T	probably damaging	Het
Tmprss11e	G	A	5: 86,855,206 (GRCm39)	Q400*	probably null	Het
Tnfsf13b	G	A	8: 10,081,661 (GRCm39)		probably null	Het
Trappc8	A	G	18: 20,970,245 (GRCm39)	V916A	probably damaging	Het
Trdn	G	T	10: 33,350,449 (GRCm39)	V673F	probably damaging	Het
Trim28	G	T	7: 12,759,711 (GRCm39)		probably benign	Het
Txnrd2	T	C	16: 18,291,632 (GRCm39)	V427A	probably damaging	Het
Uggt1	T	C	1: 36,204,587 (GRCm39)		probably benign	Het
Vmn1r36	A	G	6: 66,693,404 (GRCm39)	L51P	probably damaging	Het
Vmn1r63	T	A	7: 5,806,063 (GRCm39)	M190L	possibly damaging	Het
Vmn2r116	T	A	17: 23,606,286 (GRCm39)	N399K	probably damaging	Het
Vmn2r117	T	C	17: 23,694,488 (GRCm39)	N453S	probably benign	Het
Wbp1l	T	A	19: 46,643,109 (GRCm39)	I370N	probably damaging	Het
Zfp445	T	C	9: 122,682,046 (GRCm39)	K632E	probably benign	Het
Zfp850	C	T	7: 27,688,819 (GRCm39)	R463H	probably damaging	Het
Zyg11a	A	G	4: 108,062,054 (GRCm39)	L249P	probably damaging	Het

Other mutations in Sytl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00516:Sytl2	APN	7	90,022,113 (GRCm39)	missense	probably benign	0.25
IGL00657:Sytl2	APN	7	90,050,618 (GRCm39)	missense	probably benign	0.40
IGL00788:Sytl2	APN	7	90,031,906 (GRCm39)	intron	probably benign
IGL00834:Sytl2	APN	7	90,031,844 (GRCm39)	intron	probably benign
IGL01833:Sytl2	APN	7	90,045,745 (GRCm39)	missense	probably damaging	0.99
IGL01866:Sytl2	APN	7	90,031,047 (GRCm39)	intron	probably benign
IGL02215:Sytl2	APN	7	90,030,422 (GRCm39)	intron	probably benign
IGL02934:Sytl2	APN	7	90,025,200 (GRCm39)	missense	probably benign	0.00
IGL03095:Sytl2	APN	7	90,041,642 (GRCm39)	missense	probably damaging	1.00
finder	UTSW	7	90,024,860 (GRCm39)	missense	probably damaging	1.00
keeper	UTSW	7	90,007,432 (GRCm39)	nonsense	probably null
R0126:Sytl2	UTSW	7	90,045,797 (GRCm39)	missense	probably damaging	1.00
R0269:Sytl2	UTSW	7	90,052,228 (GRCm39)	splice site	probably benign
R0270:Sytl2	UTSW	7	90,052,228 (GRCm39)	splice site	probably benign
R0271:Sytl2	UTSW	7	90,052,228 (GRCm39)	splice site	probably benign
R0288:Sytl2	UTSW	7	90,052,228 (GRCm39)	splice site	probably benign
R0528:Sytl2	UTSW	7	90,052,228 (GRCm39)	splice site	probably benign
R0601:Sytl2	UTSW	7	90,044,374 (GRCm39)	missense	probably damaging	1.00
R1634:Sytl2	UTSW	7	90,044,390 (GRCm39)	missense	probably damaging	1.00
R1777:Sytl2	UTSW	7	90,052,260 (GRCm39)	missense	probably benign	0.25
R2040:Sytl2	UTSW	7	90,031,069 (GRCm39)	intron	probably benign
R3788:Sytl2	UTSW	7	90,025,289 (GRCm39)	missense	probably benign	0.00
R3843:Sytl2	UTSW	7	90,009,367 (GRCm39)	missense	possibly damaging	0.77
R3952:Sytl2	UTSW	7	90,030,700 (GRCm39)	intron	probably benign
R4082:Sytl2	UTSW	7	90,057,635 (GRCm39)	missense	possibly damaging	0.88
R4600:Sytl2	UTSW	7	90,024,977 (GRCm39)	missense	probably benign	0.11
R4651:Sytl2	UTSW	7	90,024,633 (GRCm39)	missense	probably damaging	1.00
R4724:Sytl2	UTSW	7	89,998,000 (GRCm39)	start codon destroyed	probably null	1.00
R4730:Sytl2	UTSW	7	90,030,457 (GRCm39)	intron	probably benign
R4870:Sytl2	UTSW	7	90,038,106 (GRCm39)	missense	probably damaging	1.00
R4959:Sytl2	UTSW	7	90,025,245 (GRCm39)	missense	probably damaging	0.97
R4995:Sytl2	UTSW	7	90,031,465 (GRCm39)	intron	probably benign
R5009:Sytl2	UTSW	7	90,030,523 (GRCm39)	intron	probably benign
R5096:Sytl2	UTSW	7	90,025,290 (GRCm39)	missense	possibly damaging	0.49
R5191:Sytl2	UTSW	7	90,024,860 (GRCm39)	missense	probably damaging	1.00
R5305:Sytl2	UTSW	7	90,031,071 (GRCm39)	intron	probably benign
R5538:Sytl2	UTSW	7	90,038,114 (GRCm39)	missense	probably benign	0.03
R5792:Sytl2	UTSW	7	90,024,897 (GRCm39)	missense	probably damaging	0.98
R6378:Sytl2	UTSW	7	90,007,432 (GRCm39)	nonsense	probably null
R6982:Sytl2	UTSW	7	90,045,772 (GRCm39)	missense	probably damaging	0.96
R7456:Sytl2	UTSW	7	89,998,055 (GRCm39)	missense	probably damaging	1.00
R7600:Sytl2	UTSW	7	90,025,352 (GRCm39)	missense	probably benign	0.00
R8127:Sytl2	UTSW	7	90,024,798 (GRCm39)	missense	possibly damaging	0.93
R8171:Sytl2	UTSW	7	90,058,678 (GRCm39)	missense	probably damaging	1.00
R8225:Sytl2	UTSW	7	90,024,725 (GRCm39)	missense	probably benign	0.36
R8297:Sytl2	UTSW	7	90,034,283 (GRCm39)	missense	probably benign
R8843:Sytl2	UTSW	7	90,025,334 (GRCm39)	missense	probably benign	0.03
R8929:Sytl2	UTSW	7	90,024,810 (GRCm39)	missense	probably benign	0.20
R9027:Sytl2	UTSW	7	90,028,748 (GRCm39)	missense	probably benign	0.00
R9222:Sytl2	UTSW	7	90,050,633 (GRCm39)	missense	possibly damaging	0.81
R9246:Sytl2	UTSW	7	90,007,384 (GRCm39)	missense	probably benign	0.31
R9268:Sytl2	UTSW	7	90,034,359 (GRCm39)	missense	probably benign	0.00
R9399:Sytl2	UTSW	7	90,041,658 (GRCm39)	missense	probably benign	0.23
R9480:Sytl2	UTSW	7	90,020,718 (GRCm39)	missense	possibly damaging	0.92
R9573:Sytl2	UTSW	7	90,057,599 (GRCm39)	missense	probably damaging	1.00
R9583:Sytl2	UTSW	7	90,024,800 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- TCCCTGGGCAGTTTATCTTCAGGTC -3'
(R):5'- GCTTCTGCCAGCAACTTCTGTAACC -3'

Sequencing Primer
(F):5'- CACAGCTAAACCAGTGGTCTTTG -3'
(R):5'- CATGGCGTTAAACTCCTTGG -3'

Posted On

2013-07-11