Mutagenetix > Incidental Mutation

Incidental Mutation 'R7034:Vmn2r59'

546528

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r59

Ensembl Gene

ENSMUSG00000092032

Gene Name

vomeronasal 2, receptor 59

Synonyms

EG628444

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R7034 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

42011792-42058981 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 42046220 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 256 (E256G)

Ref Sequence

ENSEMBL: ENSMUSP00000131856 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000168489]

AlphaFold

E9PUT5

Predicted Effect

probably benign
Transcript: ENSMUST00000168489
AA Change: E256G

PolyPhen 2 Score 0.031 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000131856
Gene: ENSMUSG00000092032
AA Change: E256G

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:ANF_receptor	77	471	1.8e-44	PFAM
Pfam:NCD3G	514	567	4.3e-23	PFAM
Pfam:7tm_3	600	835	5.4e-53	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	T	A	10: 100,609,256		probably null	Het
9030624J02Rik	T	C	7: 118,773,092	S290P	probably damaging	Het
9130011E15Rik	A	G	19: 45,965,249	I195T	probably damaging	Het
Adamts1	T	A	16: 85,802,746		probably benign	Het
Aff4	A	G	11: 53,408,409	K979E	probably damaging	Het
Aftph	A	T	11: 20,692,498	M845K	probably damaging	Het
Akt2	T	C	7: 27,637,012		probably null	Het
Aldh1a7	A	T	19: 20,708,178	L336Q	possibly damaging	Het
Ank3	C	T	10: 69,999,379	T680M	probably damaging	Het
Apeh	T	C	9: 108,094,271	E59G	possibly damaging	Het
Armc8	C	T	9: 99,483,965		probably null	Het
Atp2b1	C	T	10: 98,987,310	T244I	probably damaging	Het
Btaf1	C	A	19: 37,004,469	T1633K	probably benign	Het
Cacng8	A	G	7: 3,415,303	S324G	probably benign	Het
Calcr	T	A	6: 3,692,543	Q400L	probably damaging	Het
Caprin2	G	A	6: 148,848,205	P536S	possibly damaging	Het
Ccdc54	A	T	16: 50,590,588	M105K	probably benign	Het
Ccna1	T	C	3: 55,046,039	E381G	possibly damaging	Het
Cd2ap	A	T	17: 42,798,599	L623Q	probably damaging	Het
Cdkl3	A	G	11: 52,027,215	E415G	probably benign	Het
Chd5	C	A	4: 152,360,941	L430I	possibly damaging	Het
Clspn	G	A	4: 126,580,982	E975K	possibly damaging	Het
Cobl	C	A	11: 12,254,177	V835F	probably damaging	Het
D430041D05Rik	C	A	2: 104,192,538	R1037L	probably damaging	Het
Derl1	A	G	15: 57,879,047		probably null	Het
Dhrs9	T	G	2: 69,393,176	N89K	probably benign	Het
Erich1	A	G	8: 14,064,330	I60T	probably benign	Het
Fam126b	T	A	1: 58,535,537	M282L	probably benign	Het
Fam155a	G	A	8: 9,770,589	P144S	possibly damaging	Het
Fam184a	A	T	10: 53,694,814	S408T	possibly damaging	Het
Fcgr4	T	A	1: 171,020,088	M85K	probably benign	Het
Foxj3	A	G	4: 119,619,300	E259G	probably damaging	Het
Galnt11	T	C	5: 25,258,813	I361T	probably damaging	Het
Gck	A	G	11: 5,901,747	S441P	probably damaging	Het
Gdap1l1	G	T	2: 163,446,145	V98F	probably damaging	Het
Gm13089	A	T	4: 143,697,328	I297N	probably damaging	Het
Gm884	T	A	11: 103,615,812		probably benign	Het
Gramd1a	A	G	7: 31,132,756		probably null	Het
Herc3	A	T	6: 58,876,855	M629L	probably benign	Het
Hist2h2ab	C	T	3: 96,219,988	Q25*	probably null	Het
Hoxc12	G	A	15: 102,938,360	G229D	probably damaging	Het
Itga9	T	C	9: 118,698,365	L528P	probably benign	Het
Krt39	A	C	11: 99,521,236	V8G	probably benign	Het
Krt71	A	G	15: 101,738,337	I312T	probably benign	Het
Mllt11	A	G	3: 95,220,433	Y9H	probably damaging	Het
Mrgpra3	G	T	7: 47,590,090	N29K	possibly damaging	Het
Mug1	A	G	6: 121,873,644	T700A	probably benign	Het
Myl1	T	C	1: 66,930,236	N79S	probably damaging	Het
Myo18b	G	A	5: 112,723,904	Q2104*	probably null	Het
Ndufs2	T	C	1: 171,238,308	D256G	probably benign	Het
Nek5	T	C	8: 22,107,723	N280S	probably benign	Het
Nwd2	A	T	5: 63,804,915	N614I	probably damaging	Het
Olfr794	G	A	10: 129,571,072	C139Y	possibly damaging	Het
Parp1	G	T	1: 180,598,252	K849N	possibly damaging	Het
Pcnx2	T	C	8: 125,785,302	T1422A	probably damaging	Het
Plce1	A	G	19: 38,739,357	N1520S	probably damaging	Het
Ppcdc	T	C	9: 57,415,170	T149A	probably damaging	Het
Ppl	A	G	16: 5,087,502	V1643A	probably benign	Het
Prrx1	T	A	1: 163,248,338	M220L	probably benign	Het
Pspc1	A	C	14: 56,758,628		probably null	Het
Ptpn20	A	G	14: 33,614,435	*44W	probably null	Het
Qars	T	A	9: 108,514,777	V83E	probably damaging	Het
Rbm33	T	C	5: 28,394,498	M956T	unknown	Het
Sash1	C	A	10: 8,730,083	E848*	probably null	Het
Scai	T	A	2: 39,121,135	Y163F	probably damaging	Het
Serpinf2	A	T	11: 75,438,418		probably benign	Het
Sgo2b	T	A	8: 63,926,834	H988L	probably benign	Het
Sh2b2	G	A	5: 136,218,885	T604I	probably benign	Het
Skint4	A	T	4: 112,158,084	I449F	possibly damaging	Het
Slc30a2	A	G	4: 134,347,342	I88V	possibly damaging	Het
Smug1	A	G	15: 103,155,942	L184P	probably damaging	Het
Spatc1	A	G	15: 76,283,880	T180A	probably benign	Het
Ssr1	A	T	13: 37,994,025	L20Q	probably null	Het
Supt4a	A	G	11: 87,743,258	E100G	probably damaging	Het
Teddm2	T	C	1: 153,850,574	I132V	probably benign	Het
Tmem131	C	T	1: 36,792,973	G1861E	possibly damaging	Het
Tpr	A	T	1: 150,423,607	H1186L	probably benign	Het
Trim34b	A	T	7: 104,329,536		probably benign	Het
Trpm2	T	C	10: 77,912,592	M1415V	probably benign	Het
Ttll12	A	G	15: 83,586,885	F264S	probably benign	Het
Vmn2r93	A	T	17: 18,326,410	H848L	probably benign	Het
Wdfy3	G	A	5: 101,907,518	T1562I	probably damaging	Het
Ybey	T	C	10: 76,468,363	S2G	possibly damaging	Het
Zfp346	A	T	13: 55,132,387	Q308L	probably benign	Het

Other mutations in Vmn2r59

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Vmn2r59	APN	7	42012064	missense	possibly damaging	0.91
IGL01432:Vmn2r59	APN	7	42012559	missense	possibly damaging	0.82
IGL02119:Vmn2r59	APN	7	42046169	missense	probably benign	0.36
IGL02216:Vmn2r59	APN	7	42012393	missense	probably damaging	1.00
IGL02327:Vmn2r59	APN	7	42012231	missense	probably benign
IGL03346:Vmn2r59	APN	7	42043829	missense	probably benign	0.00
IGL03411:Vmn2r59	APN	7	42058916	missense	probably benign	0.43
IGL03412:Vmn2r59	APN	7	42012438	missense	probably benign
PIT4366001:Vmn2r59	UTSW	7	42045781	missense	possibly damaging	0.91
R0068:Vmn2r59	UTSW	7	42046301	missense	probably damaging	0.99
R0094:Vmn2r59	UTSW	7	42012298	missense	probably benign	0.07
R0179:Vmn2r59	UTSW	7	42047008	nonsense	probably null
R0370:Vmn2r59	UTSW	7	42012726	missense	probably benign	0.23
R0412:Vmn2r59	UTSW	7	42046492	splice site	probably benign
R0465:Vmn2r59	UTSW	7	42046908	missense	probably benign
R0487:Vmn2r59	UTSW	7	42047104	nonsense	probably null
R0576:Vmn2r59	UTSW	7	42047105	missense	probably benign	0.01
R0632:Vmn2r59	UTSW	7	42058884	missense	probably damaging	1.00
R1356:Vmn2r59	UTSW	7	42011794	makesense	probably null
R1387:Vmn2r59	UTSW	7	42046097	missense	probably damaging	1.00
R1388:Vmn2r59	UTSW	7	42045709	missense	probably benign	0.01
R1435:Vmn2r59	UTSW	7	42046205	missense	possibly damaging	0.50
R1750:Vmn2r59	UTSW	7	42045827	missense	possibly damaging	0.50
R2020:Vmn2r59	UTSW	7	42043779	missense	probably damaging	1.00
R2249:Vmn2r59	UTSW	7	42058902	missense	probably benign	0.00
R2256:Vmn2r59	UTSW	7	42012245	nonsense	probably null
R2257:Vmn2r59	UTSW	7	42012245	nonsense	probably null
R2441:Vmn2r59	UTSW	7	42046146	missense	probably benign	0.00
R2511:Vmn2r59	UTSW	7	42043766	missense	probably damaging	1.00
R2860:Vmn2r59	UTSW	7	42047003	missense	possibly damaging	0.79
R2861:Vmn2r59	UTSW	7	42047003	missense	possibly damaging	0.79
R3690:Vmn2r59	UTSW	7	42011946	missense	possibly damaging	0.77
R3912:Vmn2r59	UTSW	7	42046320	missense	probably benign	0.00
R4167:Vmn2r59	UTSW	7	42021308	intron	probably benign
R4357:Vmn2r59	UTSW	7	42012220	missense	probably damaging	1.00
R4445:Vmn2r59	UTSW	7	42042450	missense	probably damaging	1.00
R4542:Vmn2r59	UTSW	7	42046073	missense	possibly damaging	0.93
R4587:Vmn2r59	UTSW	7	42046224	missense	probably benign	0.00
R4616:Vmn2r59	UTSW	7	42012438	missense	probably benign
R4653:Vmn2r59	UTSW	7	42043804	missense	probably benign	0.19
R4703:Vmn2r59	UTSW	7	42012262	missense	probably benign	0.01
R4895:Vmn2r59	UTSW	7	42045794	missense	probably damaging	0.98
R4910:Vmn2r59	UTSW	7	42043653	missense	probably benign
R5045:Vmn2r59	UTSW	7	42046072	missense	possibly damaging	0.93
R5105:Vmn2r59	UTSW	7	42047105	missense	probably benign	0.01
R5153:Vmn2r59	UTSW	7	42042410	critical splice donor site	probably null
R5566:Vmn2r59	UTSW	7	42046823	missense	possibly damaging	0.92
R5586:Vmn2r59	UTSW	7	42045681	missense	probably benign	0.12
R5606:Vmn2r59	UTSW	7	42045894	missense	probably benign	0.27
R5616:Vmn2r59	UTSW	7	42058767	splice site	probably null
R5625:Vmn2r59	UTSW	7	42046460	missense	probably benign	0.03
R5696:Vmn2r59	UTSW	7	42046044	missense	probably benign	0.00
R5982:Vmn2r59	UTSW	7	42046067	missense	probably benign	0.00
R6106:Vmn2r59	UTSW	7	42012325	nonsense	probably null
R6196:Vmn2r59	UTSW	7	42012255	missense	probably benign	0.36
R6228:Vmn2r59	UTSW	7	42042411	critical splice donor site	probably null
R6590:Vmn2r59	UTSW	7	42046466	missense	probably damaging	1.00
R6625:Vmn2r59	UTSW	7	42043753	missense	probably benign	0.02
R6690:Vmn2r59	UTSW	7	42046466	missense	probably damaging	1.00
R6768:Vmn2r59	UTSW	7	42011968	missense	probably benign	0.17
R6830:Vmn2r59	UTSW	7	42043747	missense	probably benign	0.10
R6859:Vmn2r59	UTSW	7	42043853	missense	probably damaging	1.00
R7036:Vmn2r59	UTSW	7	42046220	missense	probably benign	0.03
R7145:Vmn2r59	UTSW	7	42045764	missense	probably damaging	1.00
R7556:Vmn2r59	UTSW	7	42045809	missense	probably damaging	1.00
R7733:Vmn2r59	UTSW	7	42012019	missense	probably benign	0.17
R7770:Vmn2r59	UTSW	7	42058912	missense	probably damaging	1.00
R7812:Vmn2r59	UTSW	7	42045772	nonsense	probably null
R7867:Vmn2r59	UTSW	7	42012283	missense	probably damaging	1.00
R7975:Vmn2r59	UTSW	7	42043775	missense	probably damaging	1.00
R7999:Vmn2r59	UTSW	7	42046832	missense	probably damaging	1.00
R8267:Vmn2r59	UTSW	7	42012097	missense	probably damaging	0.97
R8367:Vmn2r59	UTSW	7	42011823	missense	probably benign	0.44
R9106:Vmn2r59	UTSW	7	42046460	missense	probably benign	0.03
R9135:Vmn2r59	UTSW	7	42043701	missense	probably benign	0.33
R9135:Vmn2r59	UTSW	7	42043703	missense
R9234:Vmn2r59	UTSW	7	42012483	missense	possibly damaging	0.67
R9273:Vmn2r59	UTSW	7	42045862	nonsense	probably null
R9432:Vmn2r59	UTSW	7	42046830	missense	probably damaging	1.00
R9433:Vmn2r59	UTSW	7	42046166	missense	probably damaging	0.99
R9616:Vmn2r59	UTSW	7	42011875	missense	probably damaging	1.00
R9654:Vmn2r59	UTSW	7	42043793	missense	probably benign	0.10
R9741:Vmn2r59	UTSW	7	42058785	missense	probably damaging	0.99
X0025:Vmn2r59	UTSW	7	42045941	missense	probably damaging	1.00
Z1088:Vmn2r59	UTSW	7	42012414	missense	possibly damaging	0.85
Z1176:Vmn2r59	UTSW	7	42042517	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACCATCTCTTCACGGTGGTG -3'
(R):5'- GTCACTTGCCATAGTCTTGTTG -3'

Sequencing Primer
(F):5'- CTCTACCATAAAATAATCAGAGTGGG -3'
(R):5'- GTTGTTGCTTCATTTCCACTGG -3'

Posted On

2019-05-13