Mutagenetix > Incidental Mutation

Incidental Mutation 'R7036:Itga9'

546696

Institutional Source

Beutler Lab

Gene Symbol

Itga9

Ensembl Gene

ENSMUSG00000039115

Gene Name

integrin alpha 9

Synonyms

D9Ertd428e, 6720458D17Rik, 2610002H11Rik

MMRRC Submission

045012-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7036 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

118435777-118730071 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 118527433 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 528 (L528P)

Ref Sequence

ENSEMBL: ENSMUSP00000044227 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044165]

AlphaFold

B8JK39

Predicted Effect

probably benign
Transcript: ENSMUST00000044165
AA Change: L528P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000044227
Gene: ENSMUSG00000039115
AA Change: L528P

Domain	Start	End	E-Value	Type
signal peptide	1	30	N/A	INTRINSIC
Int_alpha	45	105	8.95e-7	SMART
low complexity region	181	191	N/A	INTRINSIC
Int_alpha	244	297	2.12e-8	SMART
Int_alpha	301	356	1.68e-11	SMART
Int_alpha	361	416	2.9e-15	SMART
Int_alpha	423	476	1.11e-2	SMART
SCOP:d1m1xa2	626	766	3e-32	SMART
SCOP:d1m1xa3	769	970	1e-39	SMART
transmembrane domain	981	1003	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an alpha integrin. Integrins are heterodimeric integral membrane glycoproteins composed of an alpha chain and a beta chain that mediate cell-cell and cell-matrix adhesion. The protein encoded by this gene, when bound to the beta 1 chain, forms an integrin that is a receptor for VCAM1, cytotactin and osteopontin. Expression of this gene has been found to be upregulated in small cell lung cancers. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutation of this gene results in respiratory distress leading to postnatal lethality caused by an accumulation of pleural fluid rich in triglyceride, cholesterol and lymphocytes. Mice develop edema and lymphocytic infiltration in the chest wall. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	T	A	10: 100,445,118 (GRCm39)		probably null	Het
Ahnak2	A	G	12: 112,745,216 (GRCm39)		probably benign	Het
Akt2	T	C	7: 27,336,437 (GRCm39)		probably null	Het
Aldh1a7	A	T	19: 20,685,542 (GRCm39)	L336Q	possibly damaging	Het
Ank2	T	C	3: 126,740,041 (GRCm39)		probably benign	Het
Ank3	C	T	10: 69,835,209 (GRCm39)	T680M	probably damaging	Het
Apeh	T	C	9: 107,971,470 (GRCm39)	E59G	possibly damaging	Het
Arl8a	G	C	1: 135,082,206 (GRCm39)	E145Q	probably benign	Het
Armc8	C	T	9: 99,366,018 (GRCm39)		probably null	Het
Armh3	A	G	19: 45,953,688 (GRCm39)	I195T	probably damaging	Het
Arsj	T	C	3: 126,158,649 (GRCm39)	L76P	probably damaging	Het
Atp2b1	C	T	10: 98,823,172 (GRCm39)	T244I	probably damaging	Het
Bcl6	A	T	16: 23,793,611 (GRCm39)	L112Q	probably damaging	Het
Bfsp1	T	A	2: 143,668,843 (GRCm39)	T579S	possibly damaging	Het
Btaf1	C	A	19: 36,981,869 (GRCm39)	T1633K	probably benign	Het
Cacng8	A	G	7: 3,463,819 (GRCm39)	S324G	probably benign	Het
Cd2ap	A	T	17: 43,109,490 (GRCm39)	L623Q	probably damaging	Het
Cerkl	T	C	2: 79,171,722 (GRCm39)	I379V	probably benign	Het
Cndp2	T	A	18: 84,688,070 (GRCm39)	H307L	possibly damaging	Het
Derl1	A	G	15: 57,742,443 (GRCm39)		probably null	Het
Dixdc1	T	A	9: 50,593,864 (GRCm39)	R254S	probably benign	Het
Dop1b	T	A	16: 93,574,378 (GRCm39)	D30E	probably benign	Het
Duox2	T	G	2: 122,110,934 (GRCm39)	H1513P	probably damaging	Het
Dyrk1a	G	A	16: 94,487,427 (GRCm39)	V546I	probably benign	Het
E130308A19Rik	A	C	4: 59,719,991 (GRCm39)	K508Q	probably damaging	Het
Emc8	A	T	8: 121,385,790 (GRCm39)	V108E	probably benign	Het
Epb41l1	A	G	2: 156,371,322 (GRCm39)	T720A	probably benign	Het
Fcgr4	T	A	1: 170,847,657 (GRCm39)	M85K	probably benign	Het
Fem1b	T	A	9: 62,704,310 (GRCm39)	I317F	probably damaging	Het
Focad	A	G	4: 88,042,874 (GRCm39)	E36G	probably benign	Het
Fryl	C	T	5: 73,212,951 (GRCm39)	E2275K	probably benign	Het
Galnt11	T	C	5: 25,463,811 (GRCm39)	I361T	probably damaging	Het
Garin3	G	A	11: 46,298,235 (GRCm39)	S513N		Het
Gatad2a	A	T	8: 70,370,644 (GRCm39)	N114K	probably damaging	Het
Gcnt2	CTAATG	C	13: 41,041,032 (GRCm39)		probably null	Het
Gramd1a	A	G	7: 30,832,181 (GRCm39)		probably null	Het
Gsn	T	A	2: 35,182,611 (GRCm39)	W187R	probably damaging	Het
Hoxc12	G	A	15: 102,846,795 (GRCm39)	G229D	probably damaging	Het
Hycc2	T	A	1: 58,574,696 (GRCm39)	M282L	probably benign	Het
Ints14	T	C	9: 64,871,827 (GRCm39)	V55A	probably benign	Het
Klf1	C	T	8: 85,629,379 (GRCm39)	S68F	possibly damaging	Het
Kmt2e	A	G	5: 23,683,741 (GRCm39)	E333G	probably null	Het
Krt39	A	C	11: 99,412,062 (GRCm39)	V8G	probably benign	Het
Krt71	A	G	15: 101,646,772 (GRCm39)	I312T	probably benign	Het
Lrp1b	T	C	2: 41,002,354 (GRCm39)	D2001G	possibly damaging	Het
Lrrc37	T	A	11: 103,506,638 (GRCm39)		probably benign	Het
Lrrc71	T	C	3: 87,655,693 (GRCm39)	T27A	probably benign	Het
Lrrcc1	T	C	3: 14,628,069 (GRCm39)	V958A	possibly damaging	Het
Med15	A	T	16: 17,516,019 (GRCm39)	M1K	probably null	Het
Mrgpra3	G	T	7: 47,239,838 (GRCm39)	N29K	possibly damaging	Het
Myl1	T	C	1: 66,969,395 (GRCm39)	N79S	probably damaging	Het
Naip2	A	T	13: 100,291,529 (GRCm39)	D1136E	probably benign	Het
Nat10	T	C	2: 103,584,453 (GRCm39)	N108S	probably benign	Het
Ncald	A	T	15: 37,369,122 (GRCm39)	S178T	probably benign	Het
Ndufs2	T	C	1: 171,065,877 (GRCm39)	D256G	probably benign	Het
Nek5	T	C	8: 22,597,739 (GRCm39)	N280S	probably benign	Het
Or5ak25	A	G	2: 85,268,774 (GRCm39)	S243P	probably damaging	Het
Or5d39	T	A	2: 87,979,469 (GRCm39)	D298V	probably damaging	Het
Parp1	G	T	1: 180,425,817 (GRCm39)	K849N	possibly damaging	Het
Pcdhb4	T	A	18: 37,441,835 (GRCm39)	C382S	possibly damaging	Het
Plce1	A	G	19: 38,727,801 (GRCm39)	N1520S	probably damaging	Het
Plcg2	G	A	8: 118,323,045 (GRCm39)	R700H	probably benign	Het
Popdc2	A	T	16: 38,183,173 (GRCm39)	Y52F	probably damaging	Het
Prrx1	T	A	1: 163,075,907 (GRCm39)	M220L	probably benign	Het
Pspc1	A	C	14: 56,996,085 (GRCm39)		probably null	Het
Ptchd1	T	A	X: 154,357,708 (GRCm39)	Y499F	probably damaging	Het
Ptpn20	A	G	14: 33,336,392 (GRCm39)	*44W	probably null	Het
Qars1	T	A	9: 108,391,976 (GRCm39)	V83E	probably damaging	Het
Rrh	T	C	3: 129,609,342 (GRCm39)	E55G	possibly damaging	Het
Sash1	C	A	10: 8,605,847 (GRCm39)	E848*	probably null	Het
Sds	A	T	5: 120,618,912 (GRCm39)	K125M	possibly damaging	Het
Serpinf2	A	T	11: 75,329,244 (GRCm39)		probably benign	Het
Sh2b2	G	A	5: 136,247,739 (GRCm39)	T604I	probably benign	Het
Smug1	A	G	15: 103,064,369 (GRCm39)	L184P	probably damaging	Het
Spatc1	A	G	15: 76,168,080 (GRCm39)	T180A	probably benign	Het
Ssr1	A	T	13: 38,178,001 (GRCm39)	L20Q	probably null	Het
Supt4a	A	G	11: 87,634,084 (GRCm39)	E100G	probably damaging	Het
Tbx1	G	T	16: 18,405,551 (GRCm39)	P38T	unknown	Het
Tcl1	T	C	12: 105,183,860 (GRCm39)		probably benign	Het
Teddm2	T	C	1: 153,726,320 (GRCm39)	I132V	probably benign	Het
Tmem131	C	T	1: 36,832,054 (GRCm39)	G1861E	possibly damaging	Het
Tpr	A	T	1: 150,299,358 (GRCm39)	H1186L	probably benign	Het
Trim34b	A	T	7: 103,978,743 (GRCm39)		probably benign	Het
Trpm2	T	C	10: 77,748,426 (GRCm39)	M1415V	probably benign	Het
Ttll12	A	G	15: 83,471,086 (GRCm39)	F264S	probably benign	Het
Vmn2r59	T	C	7: 41,695,644 (GRCm39)	E256G	probably benign	Het
Vmn2r93	A	T	17: 18,546,672 (GRCm39)	H848L	probably benign	Het
Vps35l	T	C	7: 118,372,315 (GRCm39)	S290P	probably damaging	Het
Wdr70	T	C	15: 7,913,855 (GRCm39)	D598G	possibly damaging	Het
Ybey	T	C	10: 76,304,197 (GRCm39)	S2G	possibly damaging	Het
Zfp346	A	T	13: 55,280,200 (GRCm39)	Q308L	probably benign	Het
Zfp872	C	T	9: 22,111,856 (GRCm39)	P445L	probably benign	Het

Other mutations in Itga9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01310:Itga9	APN	9	118,598,227 (GRCm39)	start codon destroyed	probably null	0.02
IGL01396:Itga9	APN	9	118,436,191 (GRCm39)	splice site	probably benign
IGL01476:Itga9	APN	9	118,436,179 (GRCm39)	missense	probably damaging	1.00
IGL01573:Itga9	APN	9	118,706,298 (GRCm39)	splice site	probably benign
IGL01958:Itga9	APN	9	118,465,562 (GRCm39)	splice site	probably benign
IGL02060:Itga9	APN	9	118,490,500 (GRCm39)	missense	probably damaging	1.00
IGL02146:Itga9	APN	9	118,663,400 (GRCm39)	missense	possibly damaging	0.50
IGL02391:Itga9	APN	9	118,679,873 (GRCm39)	missense	probably benign	0.19
IGL02947:Itga9	APN	9	118,487,601 (GRCm39)	missense	probably damaging	1.00
IGL03014:Itga9	UTSW	9	118,457,212 (GRCm39)	missense	probably benign
R0052:Itga9	UTSW	9	118,465,617 (GRCm39)	missense	probably damaging	1.00
R0052:Itga9	UTSW	9	118,465,617 (GRCm39)	missense	probably damaging	1.00
R0142:Itga9	UTSW	9	118,465,654 (GRCm39)	missense	probably damaging	0.96
R0179:Itga9	UTSW	9	118,490,454 (GRCm39)	missense	probably benign	0.11
R0207:Itga9	UTSW	9	118,598,321 (GRCm39)	splice site	probably benign
R0364:Itga9	UTSW	9	118,670,210 (GRCm39)	missense	probably benign
R0458:Itga9	UTSW	9	118,510,096 (GRCm39)	critical splice donor site	probably null
R1486:Itga9	UTSW	9	118,455,518 (GRCm39)	missense	probably damaging	0.98
R1589:Itga9	UTSW	9	118,436,185 (GRCm39)	critical splice donor site	probably null
R1620:Itga9	UTSW	9	118,672,570 (GRCm39)	missense	probably benign	0.00
R1711:Itga9	UTSW	9	118,527,529 (GRCm39)	missense	probably benign	0.00
R1721:Itga9	UTSW	9	118,527,374 (GRCm39)	splice site	probably benign
R2064:Itga9	UTSW	9	118,636,361 (GRCm39)	missense	probably damaging	0.99
R2201:Itga9	UTSW	9	118,706,183 (GRCm39)	splice site	probably benign
R2851:Itga9	UTSW	9	118,465,604 (GRCm39)	missense	probably damaging	0.98
R2853:Itga9	UTSW	9	118,465,604 (GRCm39)	missense	probably damaging	0.98
R3962:Itga9	UTSW	9	118,457,254 (GRCm39)	missense	possibly damaging	0.57
R4180:Itga9	UTSW	9	118,436,146 (GRCm39)	missense	probably damaging	1.00
R4597:Itga9	UTSW	9	118,672,582 (GRCm39)	missense	probably damaging	1.00
R4716:Itga9	UTSW	9	118,510,826 (GRCm39)	missense	probably damaging	0.98
R4929:Itga9	UTSW	9	118,636,317 (GRCm39)	missense	probably damaging	1.00
R5002:Itga9	UTSW	9	118,492,966 (GRCm39)	nonsense	probably null
R5279:Itga9	UTSW	9	118,457,273 (GRCm39)	missense	probably damaging	1.00
R5542:Itga9	UTSW	9	118,672,729 (GRCm39)	missense	possibly damaging	0.86
R5869:Itga9	UTSW	9	118,492,957 (GRCm39)	missense	probably damaging	1.00
R6372:Itga9	UTSW	9	118,726,389 (GRCm39)	missense	probably damaging	1.00
R6470:Itga9	UTSW	9	118,726,335 (GRCm39)	missense	probably damaging	0.99
R6581:Itga9	UTSW	9	118,487,632 (GRCm39)	missense	probably benign	0.00
R6919:Itga9	UTSW	9	118,716,883 (GRCm39)	missense	probably damaging	1.00
R7034:Itga9	UTSW	9	118,527,433 (GRCm39)	missense	probably benign	0.00
R7043:Itga9	UTSW	9	118,598,184 (GRCm39)	missense	probably damaging	0.96
R7237:Itga9	UTSW	9	118,465,670 (GRCm39)	missense	probably benign	0.09
R7491:Itga9	UTSW	9	118,598,179 (GRCm39)	missense	probably damaging	0.99
R7629:Itga9	UTSW	9	118,527,514 (GRCm39)	missense	probably benign	0.00
R7774:Itga9	UTSW	9	118,700,968 (GRCm39)	missense	probably damaging	1.00
R7782:Itga9	UTSW	9	118,672,712 (GRCm39)	missense
R7789:Itga9	UTSW	9	118,487,564 (GRCm39)	missense	possibly damaging	0.80
R7904:Itga9	UTSW	9	118,706,294 (GRCm39)	splice site	probably null
R8086:Itga9	UTSW	9	118,679,869 (GRCm39)	missense	probably benign
R8158:Itga9	UTSW	9	118,706,211 (GRCm39)	missense	probably damaging	0.99
R8204:Itga9	UTSW	9	118,700,989 (GRCm39)	missense	probably damaging	1.00
R8895:Itga9	UTSW	9	118,510,835 (GRCm39)	missense	probably damaging	1.00
R9074:Itga9	UTSW	9	118,636,344 (GRCm39)	missense	probably damaging	1.00
R9090:Itga9	UTSW	9	118,500,859 (GRCm39)	missense	possibly damaging	0.93
R9271:Itga9	UTSW	9	118,500,859 (GRCm39)	missense	possibly damaging	0.93
R9318:Itga9	UTSW	9	118,455,536 (GRCm39)	missense	probably benign	0.03
R9434:Itga9	UTSW	9	118,636,315 (GRCm39)	missense	probably damaging	1.00
Z1176:Itga9	UTSW	9	118,716,907 (GRCm39)	missense	probably damaging	1.00
Z1176:Itga9	UTSW	9	118,672,598 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GATCTTCCATAGGCTGACTACAGG -3'
(R):5'- TGGAAGTCCGAGGCTACATAATG -3'

Sequencing Primer
(F):5'- CTGACTACAGGCTTCTGAGAAGGTC -3'
(R):5'- TCCGAGGCTACATAATGAAACAAAAG -3'

Posted On

2019-05-13