Mutagenetix > Incidental Mutation

Incidental Mutation 'R7036:Zfp346'

546712

Institutional Source

Beutler Lab

Gene Symbol

Zfp346

Ensembl Gene

ENSMUSG00000021481

Gene Name

zinc finger protein 346

Synonyms

MMRRC Submission

045012-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.256) question?

Stock #

R7036 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

55253124-55282638 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 55280200 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 308 (Q308L)

Ref Sequence

ENSEMBL: ENSMUSP00000125078 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021937] [ENSMUST00000159147] [ENSMUST00000159278] [ENSMUST00000160660] [ENSMUST00000161315] [ENSMUST00000161551] [ENSMUST00000162428] [ENSMUST00000162476] [ENSMUST00000164344]

AlphaFold

Q9R0B7

Predicted Effect

probably benign
Transcript: ENSMUST00000021937
AA Change: Q293L

PolyPhen 2 Score 0.081 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000021937
Gene: ENSMUSG00000021481
AA Change: Q293L

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART
ZnF_U1	131	165	5.22e-7	SMART
ZnF_C2H2	134	158	4.98e-1	SMART
ZnF_U1	182	216	1.87e-8	SMART
ZnF_C2H2	185	209	1.51e1	SMART
ZnF_U1	236	270	1.99e-3	SMART
ZnF_C2H2	239	263	3.47e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000159147
AA Change: Q261L

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000124107
Gene: ENSMUSG00000021481
AA Change: Q261L

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
Pfam:zf-met	73	96	3.3e-5	PFAM
ZnF_U1	99	133	5.22e-7	SMART
ZnF_C2H2	102	126	4.98e-1	SMART
ZnF_U1	150	184	1.87e-8	SMART
ZnF_C2H2	153	177	1.51e1	SMART
ZnF_U1	204	238	1.99e-3	SMART
ZnF_C2H2	207	231	3.47e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000159278
AA Change: Q308L

PolyPhen 2 Score 0.276 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000125078
Gene: ENSMUSG00000021481
AA Change: Q308L

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART
ZnF_U1	131	165	5.22e-7	SMART
ZnF_C2H2	134	158	4.98e-1	SMART
ZnF_U1	198	232	1.87e-8	SMART
ZnF_C2H2	201	225	1.51e1	SMART
ZnF_U1	251	285	1.99e-3	SMART
ZnF_C2H2	254	278	3.47e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000160660

SMART Domains

Protein: ENSMUSP00000124034
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161077

SMART Domains

Protein: ENSMUSP00000125204
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
ZnF_U1	52	86	1.26e-5	SMART
ZnF_C2H2	55	79	2.61e1	SMART
ZnF_U1	113	147	5.22e-7	SMART
ZnF_C2H2	116	140	4.98e-1	SMART
ZnF_U1	180	214	1.87e-8	SMART
ZnF_C2H2	183	207	1.51e1	SMART

Predicted Effect

silent
Transcript: ENSMUST00000161315

SMART Domains

Protein: ENSMUSP00000124397
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161551

SMART Domains

Protein: ENSMUSP00000124180
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
PDB:1ZU1\|A	53	93	4e-12	PDB
Blast:ZnF_U1	70	94	3e-9	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000162428

SMART Domains

Protein: ENSMUSP00000125389
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162476

SMART Domains

Protein: ENSMUSP00000125743
Gene: ENSMUSG00000021481

Domain	Start	End	E-Value	Type
low complexity region	4	19	N/A	INTRINSIC
ZnF_U1	70	104	1.26e-5	SMART
ZnF_C2H2	73	97	2.61e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000164344

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a nucleolar, zinc finger protein that preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids, rather than DNA alone. Mutational studies indicate that the zinc finger domains are not only essential for dsRNA binding, but are also required for its nucleolar localization. The encoded protein may be involved in cell growth and survival. It plays a role in protecting neurons by inhibiting cell cycle re-entry via stimulation of p21 gene expression. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Apr 2015]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	T	A	10: 100,445,118 (GRCm39)		probably null	Het
Ahnak2	A	G	12: 112,745,216 (GRCm39)		probably benign	Het
Akt2	T	C	7: 27,336,437 (GRCm39)		probably null	Het
Aldh1a7	A	T	19: 20,685,542 (GRCm39)	L336Q	possibly damaging	Het
Ank2	T	C	3: 126,740,041 (GRCm39)		probably benign	Het
Ank3	C	T	10: 69,835,209 (GRCm39)	T680M	probably damaging	Het
Apeh	T	C	9: 107,971,470 (GRCm39)	E59G	possibly damaging	Het
Arl8a	G	C	1: 135,082,206 (GRCm39)	E145Q	probably benign	Het
Armc8	C	T	9: 99,366,018 (GRCm39)		probably null	Het
Armh3	A	G	19: 45,953,688 (GRCm39)	I195T	probably damaging	Het
Arsj	T	C	3: 126,158,649 (GRCm39)	L76P	probably damaging	Het
Atp2b1	C	T	10: 98,823,172 (GRCm39)	T244I	probably damaging	Het
Bcl6	A	T	16: 23,793,611 (GRCm39)	L112Q	probably damaging	Het
Bfsp1	T	A	2: 143,668,843 (GRCm39)	T579S	possibly damaging	Het
Btaf1	C	A	19: 36,981,869 (GRCm39)	T1633K	probably benign	Het
Cacng8	A	G	7: 3,463,819 (GRCm39)	S324G	probably benign	Het
Cd2ap	A	T	17: 43,109,490 (GRCm39)	L623Q	probably damaging	Het
Cerkl	T	C	2: 79,171,722 (GRCm39)	I379V	probably benign	Het
Cndp2	T	A	18: 84,688,070 (GRCm39)	H307L	possibly damaging	Het
Derl1	A	G	15: 57,742,443 (GRCm39)		probably null	Het
Dixdc1	T	A	9: 50,593,864 (GRCm39)	R254S	probably benign	Het
Dop1b	T	A	16: 93,574,378 (GRCm39)	D30E	probably benign	Het
Duox2	T	G	2: 122,110,934 (GRCm39)	H1513P	probably damaging	Het
Dyrk1a	G	A	16: 94,487,427 (GRCm39)	V546I	probably benign	Het
E130308A19Rik	A	C	4: 59,719,991 (GRCm39)	K508Q	probably damaging	Het
Emc8	A	T	8: 121,385,790 (GRCm39)	V108E	probably benign	Het
Epb41l1	A	G	2: 156,371,322 (GRCm39)	T720A	probably benign	Het
Fcgr4	T	A	1: 170,847,657 (GRCm39)	M85K	probably benign	Het
Fem1b	T	A	9: 62,704,310 (GRCm39)	I317F	probably damaging	Het
Focad	A	G	4: 88,042,874 (GRCm39)	E36G	probably benign	Het
Fryl	C	T	5: 73,212,951 (GRCm39)	E2275K	probably benign	Het
Galnt11	T	C	5: 25,463,811 (GRCm39)	I361T	probably damaging	Het
Garin3	G	A	11: 46,298,235 (GRCm39)	S513N		Het
Gatad2a	A	T	8: 70,370,644 (GRCm39)	N114K	probably damaging	Het
Gcnt2	CTAATG	C	13: 41,041,032 (GRCm39)		probably null	Het
Gramd1a	A	G	7: 30,832,181 (GRCm39)		probably null	Het
Gsn	T	A	2: 35,182,611 (GRCm39)	W187R	probably damaging	Het
Hoxc12	G	A	15: 102,846,795 (GRCm39)	G229D	probably damaging	Het
Hycc2	T	A	1: 58,574,696 (GRCm39)	M282L	probably benign	Het
Ints14	T	C	9: 64,871,827 (GRCm39)	V55A	probably benign	Het
Itga9	T	C	9: 118,527,433 (GRCm39)	L528P	probably benign	Het
Klf1	C	T	8: 85,629,379 (GRCm39)	S68F	possibly damaging	Het
Kmt2e	A	G	5: 23,683,741 (GRCm39)	E333G	probably null	Het
Krt39	A	C	11: 99,412,062 (GRCm39)	V8G	probably benign	Het
Krt71	A	G	15: 101,646,772 (GRCm39)	I312T	probably benign	Het
Lrp1b	T	C	2: 41,002,354 (GRCm39)	D2001G	possibly damaging	Het
Lrrc37	T	A	11: 103,506,638 (GRCm39)		probably benign	Het
Lrrc71	T	C	3: 87,655,693 (GRCm39)	T27A	probably benign	Het
Lrrcc1	T	C	3: 14,628,069 (GRCm39)	V958A	possibly damaging	Het
Med15	A	T	16: 17,516,019 (GRCm39)	M1K	probably null	Het
Mrgpra3	G	T	7: 47,239,838 (GRCm39)	N29K	possibly damaging	Het
Myl1	T	C	1: 66,969,395 (GRCm39)	N79S	probably damaging	Het
Naip2	A	T	13: 100,291,529 (GRCm39)	D1136E	probably benign	Het
Nat10	T	C	2: 103,584,453 (GRCm39)	N108S	probably benign	Het
Ncald	A	T	15: 37,369,122 (GRCm39)	S178T	probably benign	Het
Ndufs2	T	C	1: 171,065,877 (GRCm39)	D256G	probably benign	Het
Nek5	T	C	8: 22,597,739 (GRCm39)	N280S	probably benign	Het
Or5ak25	A	G	2: 85,268,774 (GRCm39)	S243P	probably damaging	Het
Or5d39	T	A	2: 87,979,469 (GRCm39)	D298V	probably damaging	Het
Parp1	G	T	1: 180,425,817 (GRCm39)	K849N	possibly damaging	Het
Pcdhb4	T	A	18: 37,441,835 (GRCm39)	C382S	possibly damaging	Het
Plce1	A	G	19: 38,727,801 (GRCm39)	N1520S	probably damaging	Het
Plcg2	G	A	8: 118,323,045 (GRCm39)	R700H	probably benign	Het
Popdc2	A	T	16: 38,183,173 (GRCm39)	Y52F	probably damaging	Het
Prrx1	T	A	1: 163,075,907 (GRCm39)	M220L	probably benign	Het
Pspc1	A	C	14: 56,996,085 (GRCm39)		probably null	Het
Ptchd1	T	A	X: 154,357,708 (GRCm39)	Y499F	probably damaging	Het
Ptpn20	A	G	14: 33,336,392 (GRCm39)	*44W	probably null	Het
Qars1	T	A	9: 108,391,976 (GRCm39)	V83E	probably damaging	Het
Rrh	T	C	3: 129,609,342 (GRCm39)	E55G	possibly damaging	Het
Sash1	C	A	10: 8,605,847 (GRCm39)	E848*	probably null	Het
Sds	A	T	5: 120,618,912 (GRCm39)	K125M	possibly damaging	Het
Serpinf2	A	T	11: 75,329,244 (GRCm39)		probably benign	Het
Sh2b2	G	A	5: 136,247,739 (GRCm39)	T604I	probably benign	Het
Smug1	A	G	15: 103,064,369 (GRCm39)	L184P	probably damaging	Het
Spatc1	A	G	15: 76,168,080 (GRCm39)	T180A	probably benign	Het
Ssr1	A	T	13: 38,178,001 (GRCm39)	L20Q	probably null	Het
Supt4a	A	G	11: 87,634,084 (GRCm39)	E100G	probably damaging	Het
Tbx1	G	T	16: 18,405,551 (GRCm39)	P38T	unknown	Het
Tcl1	T	C	12: 105,183,860 (GRCm39)		probably benign	Het
Teddm2	T	C	1: 153,726,320 (GRCm39)	I132V	probably benign	Het
Tmem131	C	T	1: 36,832,054 (GRCm39)	G1861E	possibly damaging	Het
Tpr	A	T	1: 150,299,358 (GRCm39)	H1186L	probably benign	Het
Trim34b	A	T	7: 103,978,743 (GRCm39)		probably benign	Het
Trpm2	T	C	10: 77,748,426 (GRCm39)	M1415V	probably benign	Het
Ttll12	A	G	15: 83,471,086 (GRCm39)	F264S	probably benign	Het
Vmn2r59	T	C	7: 41,695,644 (GRCm39)	E256G	probably benign	Het
Vmn2r93	A	T	17: 18,546,672 (GRCm39)	H848L	probably benign	Het
Vps35l	T	C	7: 118,372,315 (GRCm39)	S290P	probably damaging	Het
Wdr70	T	C	15: 7,913,855 (GRCm39)	D598G	possibly damaging	Het
Ybey	T	C	10: 76,304,197 (GRCm39)	S2G	possibly damaging	Het
Zfp872	C	T	9: 22,111,856 (GRCm39)	P445L	probably benign	Het

Other mutations in Zfp346

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0480:Zfp346	UTSW	13	55,260,910 (GRCm39)	nonsense	probably null
R2025:Zfp346	UTSW	13	55,280,121 (GRCm39)	missense	probably damaging	1.00
R2879:Zfp346	UTSW	13	55,253,163 (GRCm39)	missense	possibly damaging	0.66
R4564:Zfp346	UTSW	13	55,261,520 (GRCm39)	missense	probably damaging	1.00
R4821:Zfp346	UTSW	13	55,261,626 (GRCm39)	intron	probably benign
R5647:Zfp346	UTSW	13	55,270,170 (GRCm39)	missense	probably damaging	1.00
R5665:Zfp346	UTSW	13	55,260,915 (GRCm39)	missense	probably benign	0.39
R6145:Zfp346	UTSW	13	55,263,387 (GRCm39)	missense	probably damaging	0.98
R6450:Zfp346	UTSW	13	55,261,517 (GRCm39)	missense	probably damaging	1.00
R7034:Zfp346	UTSW	13	55,280,200 (GRCm39)	missense	probably benign	0.28
R7148:Zfp346	UTSW	13	55,253,263 (GRCm39)	missense	possibly damaging	0.78
R7298:Zfp346	UTSW	13	55,278,416 (GRCm39)	missense	probably damaging	0.97
R8721:Zfp346	UTSW	13	55,261,491 (GRCm39)	missense	possibly damaging	0.77

Predicted Primers

PCR Primer
(F):5'- ATTGTCCCAGCACATGAGGG -3'
(R):5'- TGTCTCCTGCCATGGCCTATAG -3'

Sequencing Primer
(F):5'- TGAGGGAAGCCATACCACCATTAG -3'
(R):5'- CCTATAGGGCCATGCTCAAGAG -3'

Posted On

2019-05-13