Mutagenetix > Incidental Mutation

Incidental Mutation 'R7051:Ppp4r3b'

547605

Institutional Source

Beutler Lab

Gene Symbol

Ppp4r3b

Ensembl Gene

ENSMUSG00000020463

Gene Name

protein phosphatase 4 regulatory subunit 3B

Synonyms

Smek2

MMRRC Submission

045148-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7051 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

29122890-29170797 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 29132507 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 87 (K87E)

Ref Sequence

ENSEMBL: ENSMUSP00000099920 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020755] [ENSMUST00000102856] [ENSMUST00000156280]

AlphaFold

Q922R5

Predicted Effect

probably benign
Transcript: ENSMUST00000020755
AA Change: K87E

PolyPhen 2 Score 0.062 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000020755
Gene: ENSMUSG00000020463
AA Change: K87E

Domain	Start	End	E-Value	Type
SCOP:d1k5db_	7	96	2e-24	SMART
low complexity region	116	127	N/A	INTRINSIC
Pfam:SMK-1	168	359	3.6e-84	PFAM
low complexity region	511	519	N/A	INTRINSIC
low complexity region	800	809	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000102856
AA Change: K87E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099920
Gene: ENSMUSG00000020463
AA Change: K87E

Domain	Start	End	E-Value	Type
SCOP:d1k5db_	7	96	2e-25	SMART
low complexity region	116	127	N/A	INTRINSIC
Pfam:SMK-1	166	359	3.8e-87	PFAM
low complexity region	511	519	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000156280
AA Change: K49E

PolyPhen 2 Score 0.119 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000119241
Gene: ENSMUSG00000020463
AA Change: K49E

Domain	Start	End	E-Value	Type
SCOP:d1k5db_	6	58	2e-9	SMART
low complexity region	78	89	N/A	INTRINSIC
Pfam:SMK-1	128	194	3e-27	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

95% (80/84)

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5930422O12Rik	C	T	8: 33,919,201 (GRCm39)	S7L	unknown	Het
Aggf1	T	C	13: 95,488,125 (GRCm39)	K674R	possibly damaging	Het
Ampd1	T	C	3: 102,997,389 (GRCm39)	F264L	probably damaging	Het
Ankle1	A	T	8: 71,860,387 (GRCm39)	S302C	probably damaging	Het
Ankrd17	G	A	5: 90,514,310 (GRCm39)		probably benign	Het
Arhgap18	T	A	10: 26,725,917 (GRCm39)	N47K	possibly damaging	Het
Atp5pb	T	C	3: 105,851,083 (GRCm39)	N205D	probably benign	Het
Atp8b3	C	T	10: 80,355,858 (GRCm39)	E1285K	probably benign	Het
Atp8b3	C	A	10: 80,365,552 (GRCm39)	V401L	probably damaging	Het
Cacna1a	G	A	8: 85,356,544 (GRCm39)	R1929Q	possibly damaging	Het
Cadm2	C	T	16: 66,679,767 (GRCm39)	S22N	possibly damaging	Het
Ccdc177	C	T	12: 80,805,927 (GRCm39)	V116M	probably damaging	Het
Cdhr18	A	G	14: 13,828,486 (GRCm38)	V758A		Het
Cdkl2	A	T	5: 92,181,084 (GRCm39)	I185N	probably damaging	Het
Cfhr2	T	A	1: 139,738,716 (GRCm39)	I282L	probably benign	Het
Clns1a	T	A	7: 97,361,824 (GRCm39)		probably null	Het
Commd2	A	T	3: 57,554,107 (GRCm39)	I198N	probably damaging	Het
Creb3l2	C	T	6: 37,313,200 (GRCm39)	V365I	possibly damaging	Het
Dcaf6	A	T	1: 165,251,886 (GRCm39)	N79K	possibly damaging	Het
Dlg5	T	C	14: 24,196,263 (GRCm39)	N1622D	possibly damaging	Het
Dock7	C	T	4: 98,834,969 (GRCm39)	R1802H	probably damaging	Het
Dpy19l2	T	C	9: 24,495,789 (GRCm39)	K643R	probably benign	Het
Dscam	G	A	16: 96,620,986 (GRCm39)	T574M	probably benign	Het
Fam209	A	G	2: 172,315,969 (GRCm39)	T115A	probably damaging	Het
Fastkd5	C	T	2: 130,456,337 (GRCm39)	C751Y	probably damaging	Het
Fat3	C	A	9: 16,289,123 (GRCm39)	L133F	probably damaging	Het
Fcsk	A	T	8: 111,616,971 (GRCm39)	I393N	probably damaging	Het
Frmd6	T	C	12: 70,944,170 (GRCm39)	V516A	possibly damaging	Het
Fry	G	A	5: 150,318,634 (GRCm39)	D955N	possibly damaging	Het
Gm7298	T	C	6: 121,751,993 (GRCm39)		probably null	Het
Golga7b	T	A	19: 42,256,899 (GRCm39)	*168R	probably null	Het
Golim4	T	A	3: 75,800,309 (GRCm39)	Q395L	probably benign	Het
Gxylt2	T	A	6: 100,781,537 (GRCm39)	L404*	probably null	Het
H1f4	A	G	13: 23,806,422 (GRCm39)	V20A	probably benign	Het
Ighmbp2	G	T	19: 3,311,462 (GRCm39)	S984R	probably damaging	Het
Irf8	C	T	8: 121,466,581 (GRCm39)	R9W	probably damaging	Het
Itga4	T	C	2: 79,148,470 (GRCm39)	V788A	possibly damaging	Het
Kifap3	G	A	1: 163,621,649 (GRCm39)	R99H	probably damaging	Het
Kiss1r	T	C	10: 79,754,688 (GRCm39)	S61P	probably damaging	Het
Krtap6-1	A	T	16: 88,828,606 (GRCm39)	M1L	unknown	Het
Large2	A	T	2: 92,197,367 (GRCm39)	M411K	probably damaging	Het
Lcor	A	G	19: 41,574,191 (GRCm39)	D982G	probably benign	Het
Lingo1	A	G	9: 56,527,467 (GRCm39)	V374A	probably benign	Het
Lrch1	A	G	14: 75,022,962 (GRCm39)	V637A	probably damaging	Het
Lyar	T	C	5: 38,382,024 (GRCm39)	V2A	probably damaging	Het
Nell1	C	T	7: 50,098,592 (GRCm39)	S298L	unknown	Het
Ogfod3	T	A	11: 121,086,031 (GRCm39)	I188F	probably damaging	Het
Opa3	C	A	7: 18,978,961 (GRCm39)	A142E	possibly damaging	Het
Or5b123	T	A	19: 13,596,769 (GRCm39)	M81K	possibly damaging	Het
Or5k1	T	C	16: 58,617,538 (GRCm39)	T224A	probably benign	Het
Pald1	T	C	10: 61,159,125 (GRCm39)	R769G	probably benign	Het
Pappa2	T	A	1: 158,784,753 (GRCm39)	T86S	unknown	Het
Papss1	T	C	3: 131,307,811 (GRCm39)	Y266H	probably damaging	Het
Pcdhga7	C	A	18: 37,849,994 (GRCm39)	A667D	probably damaging	Het
Pcsk5	T	A	19: 17,411,095 (GRCm39)	T1766S	probably benign	Het
Pds5b	T	A	5: 150,717,747 (GRCm39)	N1129K	possibly damaging	Het
Pop7	T	C	5: 137,499,952 (GRCm39)	N127S	probably damaging	Het
Ppfibp2	A	G	7: 107,316,925 (GRCm39)	E300G	probably damaging	Het
Psmd3	T	A	11: 98,573,659 (GRCm39)	M35K	possibly damaging	Het
Pus7	A	G	5: 23,980,677 (GRCm39)	V191A	probably damaging	Het
Rptor	C	T	11: 119,765,012 (GRCm39)		probably benign	Het
Sacs	A	G	14: 61,446,377 (GRCm39)	M2808V	probably benign	Het
Scube3	G	A	17: 28,386,573 (GRCm39)	V831I	probably benign	Het
Sin3a	A	T	9: 57,011,218 (GRCm39)	N492Y	probably damaging	Het
Slc12a3	A	G	8: 95,092,572 (GRCm39)	T998A	probably damaging	Het
Slc4a1	T	C	11: 102,247,084 (GRCm39)	N501S	probably benign	Het
Sltm	G	A	9: 70,466,348 (GRCm39)	G94R	probably damaging	Het
Smc4	T	A	3: 68,934,835 (GRCm39)	W650R	probably damaging	Het
Smg7	A	G	1: 152,724,601 (GRCm39)	S527P	probably damaging	Het
Tcf20	T	C	15: 82,740,279 (GRCm39)	N391D	probably damaging	Het
Tiam2	G	A	17: 3,498,758 (GRCm39)	V845M	probably damaging	Het
Tln2	A	G	9: 67,253,699 (GRCm39)	F793L	probably benign	Het
Uckl1	T	C	2: 181,216,037 (GRCm39)	I193V	probably damaging	Het
Ugt1a5	A	G	1: 88,094,077 (GRCm39)	M102V	probably benign	Het
Usp38	G	A	8: 81,727,750 (GRCm39)	P328S	possibly damaging	Het
Vmn1r189	A	G	13: 22,286,285 (GRCm39)	V184A	possibly damaging	Het
Vps13d	C	A	4: 144,889,914 (GRCm39)	A597S	probably benign	Het
Wdr47	T	A	3: 108,525,840 (GRCm39)	L121Q	probably damaging	Het
Wiz	A	G	17: 32,580,507 (GRCm39)	S315P	probably damaging	Het
Zc3h13	T	C	14: 75,568,597 (GRCm39)	S1297P	probably damaging	Het
Zfp27	AATCCGCTTGTGCA	AA	7: 29,594,446 (GRCm39)		probably benign	Het

Other mutations in Ppp4r3b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00495:Ppp4r3b	APN	11	29,161,782 (GRCm39)	missense	possibly damaging	0.64
IGL00593:Ppp4r3b	APN	11	29,147,205 (GRCm39)	missense	possibly damaging	0.88
IGL01109:Ppp4r3b	APN	11	29,138,288 (GRCm39)	missense	probably damaging	0.97
IGL01311:Ppp4r3b	APN	11	29,144,591 (GRCm39)	missense	probably benign
IGL01397:Ppp4r3b	APN	11	29,163,594 (GRCm39)	missense	probably benign	0.05
IGL01546:Ppp4r3b	APN	11	29,159,488 (GRCm39)	splice site	probably null
IGL02588:Ppp4r3b	APN	11	29,148,853 (GRCm39)	nonsense	probably null
IGL02713:Ppp4r3b	APN	11	29,138,445 (GRCm39)	missense	probably damaging	0.98
IGL02717:Ppp4r3b	APN	11	29,123,315 (GRCm39)	missense	probably benign	0.01
brando	UTSW	11	29,161,667 (GRCm39)	missense	probably benign
Debatable	UTSW	11	29,159,436 (GRCm39)	missense	possibly damaging	0.86
Kindness	UTSW	11	29,123,449 (GRCm39)	critical splice donor site	probably null
Maris	UTSW	11	29,159,356 (GRCm39)	missense	probably damaging	1.00
Stella	UTSW	11	29,146,290 (GRCm39)	missense	probably null
PIT1430001:Ppp4r3b	UTSW	11	29,159,434 (GRCm39)	missense	probably benign	0.04
PIT4677001:Ppp4r3b	UTSW	11	29,137,978 (GRCm39)	missense	probably benign
R0766:Ppp4r3b	UTSW	11	29,123,358 (GRCm39)	missense	probably benign	0.16
R1170:Ppp4r3b	UTSW	11	29,159,426 (GRCm39)	missense	probably damaging	0.99
R1312:Ppp4r3b	UTSW	11	29,123,358 (GRCm39)	missense	probably benign	0.16
R1511:Ppp4r3b	UTSW	11	29,132,460 (GRCm39)	missense	probably damaging	1.00
R1692:Ppp4r3b	UTSW	11	29,138,123 (GRCm39)	missense	probably benign	0.02
R1699:Ppp4r3b	UTSW	11	29,163,765 (GRCm39)	missense	possibly damaging	0.52
R2303:Ppp4r3b	UTSW	11	29,150,741 (GRCm39)	missense	possibly damaging	0.79
R2339:Ppp4r3b	UTSW	11	29,150,725 (GRCm39)	missense	possibly damaging	0.65
R4378:Ppp4r3b	UTSW	11	29,159,450 (GRCm39)	missense	possibly damaging	0.72
R4940:Ppp4r3b	UTSW	11	29,161,740 (GRCm39)	missense	probably benign
R5256:Ppp4r3b	UTSW	11	29,138,293 (GRCm39)	missense	probably benign	0.22
R5266:Ppp4r3b	UTSW	11	29,123,309 (GRCm39)	missense	possibly damaging	0.63
R5286:Ppp4r3b	UTSW	11	29,161,667 (GRCm39)	missense	probably benign
R5354:Ppp4r3b	UTSW	11	29,161,646 (GRCm39)	missense	probably benign	0.26
R5877:Ppp4r3b	UTSW	11	29,159,356 (GRCm39)	missense	probably damaging	1.00
R6364:Ppp4r3b	UTSW	11	29,138,035 (GRCm39)	missense	probably benign	0.00
R6539:Ppp4r3b	UTSW	11	29,168,503 (GRCm39)	missense	probably benign	0.00
R6773:Ppp4r3b	UTSW	11	29,155,639 (GRCm39)	missense	probably benign	0.02
R6931:Ppp4r3b	UTSW	11	29,161,786 (GRCm39)	missense	possibly damaging	0.88
R7176:Ppp4r3b	UTSW	11	29,148,904 (GRCm39)	missense	probably damaging	1.00
R7569:Ppp4r3b	UTSW	11	29,138,540 (GRCm39)	missense	possibly damaging	0.91
R7741:Ppp4r3b	UTSW	11	29,155,701 (GRCm39)	missense	possibly damaging	0.78
R7746:Ppp4r3b	UTSW	11	29,123,352 (GRCm39)	missense	probably benign	0.00
R7810:Ppp4r3b	UTSW	11	29,138,086 (GRCm39)	missense	probably benign	0.02
R8129:Ppp4r3b	UTSW	11	29,159,364 (GRCm39)	missense	probably damaging	1.00
R8680:Ppp4r3b	UTSW	11	29,123,449 (GRCm39)	critical splice donor site	probably null
R8685:Ppp4r3b	UTSW	11	29,159,436 (GRCm39)	missense	possibly damaging	0.86
R8910:Ppp4r3b	UTSW	11	29,146,290 (GRCm39)	missense	probably null
R8928:Ppp4r3b	UTSW	11	29,144,598 (GRCm39)	missense	probably benign	0.00
R8947:Ppp4r3b	UTSW	11	29,150,758 (GRCm39)	missense	possibly damaging	0.63
R8954:Ppp4r3b	UTSW	11	29,155,669 (GRCm39)	missense	possibly damaging	0.64
R8991:Ppp4r3b	UTSW	11	29,123,306 (GRCm39)	start codon destroyed	probably damaging	1.00
R9068:Ppp4r3b	UTSW	11	29,159,396 (GRCm39)	missense	probably benign	0.01
R9225:Ppp4r3b	UTSW	11	29,155,648 (GRCm39)	missense	possibly damaging	0.95
R9417:Ppp4r3b	UTSW	11	29,144,598 (GRCm39)	missense	probably benign	0.00
R9487:Ppp4r3b	UTSW	11	29,124,697 (GRCm39)	missense	probably damaging	1.00
R9635:Ppp4r3b	UTSW	11	29,138,113 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CAGGTGAATGTACTTTAACTGTCAG -3'
(R):5'- AGGTCAGTGTCAGAGCACTTC -3'

Sequencing Primer
(F):5'- ATGTACTTTAACTGTCAGTTTGCTC -3'
(R):5'- TCAGTGTCAGAGCACTTCTTTAG -3'

Posted On

2019-05-13