Mutagenetix > Incidental Mutation

Incidental Mutation 'R7052:Palmd'

547645

Institutional Source

Beutler Lab

Gene Symbol

Palmd

Ensembl Gene

ENSMUSG00000033377

Gene Name

palmdelphin

Synonyms

4631423C22Rik, PALML

MMRRC Submission

045149-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R7052 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

116711907-116762636 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 116717012 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 495 (N495S)

Ref Sequence

ENSEMBL: ENSMUSP00000113107 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040097] [ENSMUST00000119557] [ENSMUST00000143611]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000040097
AA Change: N495S

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000044693
Gene: ENSMUSG00000033377
AA Change: N495S

Domain	Start	End	E-Value	Type
low complexity region	29	44	N/A	INTRINSIC
Pfam:Paralemmin	65	512	3.6e-57	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000119557
AA Change: N495S

PolyPhen 2 Score 0.298 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113107
Gene: ENSMUSG00000033377
AA Change: N495S

Domain	Start	End	E-Value	Type
low complexity region	29	44	N/A	INTRINSIC
Pfam:Paralemmin	64	278	6.6e-14	PFAM
Pfam:Paralemmin	323	515	1.3e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000143611

SMART Domains

Protein: ENSMUSP00000122725
Gene: ENSMUSG00000033377

Domain	Start	End	E-Value	Type
coiled coil region	4	94	N/A	INTRINSIC

Meta Mutation Damage Score

0.0656

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (63/63)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc9	C	T	6: 142,604,261 (GRCm39)	R658H	probably benign	Het
Als2cl	C	T	9: 110,727,151 (GRCm39)	R906C	probably damaging	Het
Asb8	T	C	15: 98,034,282 (GRCm39)	H91R	probably damaging	Het
Atp8b3	C	T	10: 80,355,858 (GRCm39)	E1285K	probably benign	Het
Bves	G	A	10: 45,222,386 (GRCm39)	R172H	possibly damaging	Het
C6	A	T	15: 4,763,177 (GRCm39)	N59I	probably damaging	Het
Capn15	A	T	17: 26,180,724 (GRCm39)	V782D	probably damaging	Het
Ccdc168	T	A	1: 44,096,466 (GRCm39)	Y1544F	possibly damaging	Het
Ccdc18	T	C	5: 108,309,554 (GRCm39)	L383S	probably benign	Het
Coro6	C	A	11: 77,357,056 (GRCm39)	N119K	probably benign	Het
Cps1	T	A	1: 67,237,569 (GRCm39)	D1023E	probably damaging	Het
Dctn1	T	A	6: 83,172,262 (GRCm39)		probably null	Het
Ero1a	T	A	14: 45,544,040 (GRCm39)	K55*	probably null	Het
Fam209	G	A	2: 172,314,751 (GRCm39)	G80D	possibly damaging	Het
Fam89b	G	A	19: 5,779,276 (GRCm39)	R94C	probably damaging	Het
Fut1	A	G	7: 45,269,181 (GRCm39)	*323W	probably null	Het
Garin2	C	T	12: 78,766,176 (GRCm39)	T315I	probably benign	Het
Gm47985	T	A	1: 151,058,890 (GRCm39)	F177Y	possibly damaging	Het
Gstm7	T	A	3: 107,838,633 (GRCm39)	D37V	probably damaging	Het
H2-Aa	T	A	17: 34,503,484 (GRCm39)	S38C	possibly damaging	Het
Ighg2c	T	C	12: 113,252,343 (GRCm39)	T70A		Het
Ino80	A	G	2: 119,257,068 (GRCm39)		probably null	Het
Irf8	C	T	8: 121,466,581 (GRCm39)	R9W	probably damaging	Het
Kcnt2	A	G	1: 140,310,785 (GRCm39)	N197S	probably damaging	Het
Kif11	T	A	19: 37,373,040 (GRCm39)	C86*	probably null	Het
Lonp1	A	T	17: 56,933,549 (GRCm39)	F109I	probably benign	Het
Mlkl	G	A	8: 112,046,074 (GRCm39)	S312L	possibly damaging	Het
Mroh9	T	A	1: 162,866,525 (GRCm39)	Q706L	possibly damaging	Het
Mtmr7	T	C	8: 41,008,874 (GRCm39)	H315R	possibly damaging	Het
Myh7b	G	C	2: 155,456,053 (GRCm39)	R146P	probably damaging	Het
Naip5	A	G	13: 100,358,855 (GRCm39)	Y794H	probably benign	Het
Nup153	A	T	13: 46,840,949 (GRCm39)	N886K	probably benign	Het
Nup205	A	G	6: 35,192,077 (GRCm39)	R1047G	possibly damaging	Het
Oog3	A	T	4: 143,887,027 (GRCm39)	L31Q	probably damaging	Het
Or5b123	T	A	19: 13,596,990 (GRCm39)	S155T	probably benign	Het
Or6c38	T	C	10: 128,929,744 (GRCm39)	Y33C	probably damaging	Het
Patj	A	G	4: 98,565,497 (GRCm39)	Q1070R	probably benign	Het
Pax1	G	A	2: 147,207,824 (GRCm39)	R232H	probably damaging	Het
Pcdhb1	A	G	18: 37,399,582 (GRCm39)	N511S	probably damaging	Het
Pigs	C	T	11: 78,232,211 (GRCm39)	L448F	probably damaging	Het
Pih1d2	A	G	9: 50,533,077 (GRCm39)	Y235C	probably damaging	Het
Pkd2l2	T	A	18: 34,558,212 (GRCm39)	I297K	possibly damaging	Het
Pou2f1	C	T	1: 165,742,684 (GRCm39)	V82I	possibly damaging	Het
Pramel1	T	C	4: 143,123,074 (GRCm39)	L17P	probably damaging	Het
Riok1	C	T	13: 38,220,991 (GRCm39)		probably benign	Het
Scg3	C	A	9: 75,568,664 (GRCm39)	E358*	probably null	Het
Siglec15	T	C	18: 78,091,946 (GRCm39)	E85G	probably damaging	Het
Snx20	T	C	8: 89,356,606 (GRCm39)	H70R	probably benign	Het
Spi1	T	A	2: 90,943,685 (GRCm39)	S76R	probably damaging	Het
Stat5a	T	C	11: 100,770,111 (GRCm39)	S463P	probably damaging	Het
Svs5	A	G	2: 164,080,126 (GRCm39)	I13T	unknown	Het
Tmem132e	T	C	11: 82,328,189 (GRCm39)	S406P	probably damaging	Het
Top1mt	T	C	15: 75,540,560 (GRCm39)	N237S	possibly damaging	Het
Trav6d-4	G	A	14: 52,991,053 (GRCm39)	V30M	possibly damaging	Het
Trp73	A	T	4: 154,149,140 (GRCm39)	M217K	probably damaging	Het
Vmn1r58	A	G	7: 5,414,134 (GRCm39)	I32T	probably benign	Het
Vmn1r9	T	C	6: 57,048,396 (GRCm39)	M157T	probably benign	Het
Vmn2r100	C	T	17: 19,751,556 (GRCm39)	S533F	possibly damaging	Het
Vmn2r112	T	A	17: 22,821,507 (GRCm39)	M160K	probably benign	Het
Vps13d	C	A	4: 144,889,914 (GRCm39)	A597S	probably benign	Het
Zfp27	AATCCGCTTGTGCA	AA	7: 29,594,446 (GRCm39)		probably benign	Het

Other mutations in Palmd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00703:Palmd	APN	3	116,721,040 (GRCm39)	splice site	probably benign
IGL01112:Palmd	APN	3	116,717,922 (GRCm39)	missense	probably damaging	1.00
IGL01484:Palmd	APN	3	116,746,794 (GRCm39)	splice site	probably benign
IGL01527:Palmd	APN	3	116,720,837 (GRCm39)	nonsense	probably null
IGL01561:Palmd	APN	3	116,717,742 (GRCm39)	missense	probably damaging	0.99
IGL01975:Palmd	APN	3	116,717,283 (GRCm39)	missense	probably benign	0.24
R0107:Palmd	UTSW	3	116,717,725 (GRCm39)	missense	probably damaging	1.00
R1099:Palmd	UTSW	3	116,716,874 (GRCm39)	missense	possibly damaging	0.71
R1552:Palmd	UTSW	3	116,741,689 (GRCm39)	splice site	probably benign
R1613:Palmd	UTSW	3	116,717,153 (GRCm39)	missense	probably damaging	1.00
R1710:Palmd	UTSW	3	116,717,306 (GRCm39)	missense	probably damaging	1.00
R2090:Palmd	UTSW	3	116,721,083 (GRCm39)	missense	probably damaging	1.00
R2869:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2869:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2870:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2870:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2871:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2871:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2872:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2872:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R2873:Palmd	UTSW	3	116,717,400 (GRCm39)	missense	possibly damaging	0.60
R3774:Palmd	UTSW	3	116,721,312 (GRCm39)	missense	probably damaging	1.00
R3981:Palmd	UTSW	3	116,717,472 (GRCm39)	missense	probably benign	0.01
R3982:Palmd	UTSW	3	116,717,472 (GRCm39)	missense	probably benign	0.01
R3983:Palmd	UTSW	3	116,717,472 (GRCm39)	missense	probably benign	0.01
R4955:Palmd	UTSW	3	116,717,873 (GRCm39)	missense	probably damaging	1.00
R5103:Palmd	UTSW	3	116,721,070 (GRCm39)	missense	probably damaging	1.00
R5261:Palmd	UTSW	3	116,717,009 (GRCm39)	missense	probably benign	0.04
R5265:Palmd	UTSW	3	116,717,498 (GRCm39)	missense	possibly damaging	0.67
R5292:Palmd	UTSW	3	116,717,393 (GRCm39)	missense	probably benign	0.00
R5499:Palmd	UTSW	3	116,717,481 (GRCm39)	missense	probably benign	0.01
R5597:Palmd	UTSW	3	116,717,225 (GRCm39)	missense	probably damaging	1.00
R5666:Palmd	UTSW	3	116,717,750 (GRCm39)	missense	possibly damaging	0.55
R5817:Palmd	UTSW	3	116,712,272 (GRCm39)	missense	probably benign	0.01
R6843:Palmd	UTSW	3	116,717,864 (GRCm39)	missense	probably damaging	1.00
R6854:Palmd	UTSW	3	116,717,112 (GRCm39)	missense	probably benign	0.06
R7450:Palmd	UTSW	3	116,721,292 (GRCm39)	missense	probably damaging	1.00
R8876:Palmd	UTSW	3	116,720,899 (GRCm39)	missense	probably damaging	1.00
R9655:Palmd	UTSW	3	116,716,840 (GRCm39)	makesense	probably null
R9681:Palmd	UTSW	3	116,717,120 (GRCm39)	missense	probably benign	0.22
Z1177:Palmd	UTSW	3	116,717,151 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGTCAGAGCGTTCATTAGCAC -3'
(R):5'- GAAGCTTTTGACAGGCTACG -3'

Sequencing Primer
(F):5'- TTCATTAGCACGGAGAAGACTGTCAC -3'
(R):5'- CTTTTGACAGGCTACGACGGG -3'

Posted On

2019-05-13