Incidental Mutation 'R7054:Cc2d2a'
ID 547764
Institutional Source Beutler Lab
Gene Symbol Cc2d2a
Ensembl Gene ENSMUSG00000039765
Gene Name coiled-coil and C2 domain containing 2A
Synonyms b2b1035Clo, 5730509K17Rik
MMRRC Submission 045151-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.914) question?
Stock # R7054 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 43662346-43740972 bp(+) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) C to T at 43699979 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 454 (R454*)
Ref Sequence ENSEMBL: ENSMUSP00000114349 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048150] [ENSMUST00000125866]
AlphaFold Q8CFW7
Predicted Effect probably null
Transcript: ENSMUST00000048150
AA Change: R503*
SMART Domains Protein: ENSMUSP00000048320
Gene: ENSMUSG00000039765
AA Change: R503*

DomainStartEndE-ValueType
low complexity region 26 41 N/A INTRINSIC
low complexity region 58 67 N/A INTRINSIC
low complexity region 124 136 N/A INTRINSIC
low complexity region 203 217 N/A INTRINSIC
coiled coil region 472 501 N/A INTRINSIC
coiled coil region 553 582 N/A INTRINSIC
Pfam:CC2D2AN-C2 645 817 2e-36 PFAM
low complexity region 1005 1017 N/A INTRINSIC
low complexity region 1024 1036 N/A INTRINSIC
C2 1048 1208 3.43e-5 SMART
Predicted Effect probably null
Transcript: ENSMUST00000125866
AA Change: R454*
SMART Domains Protein: ENSMUSP00000114349
Gene: ENSMUSG00000039765
AA Change: R454*

DomainStartEndE-ValueType
low complexity region 9 18 N/A INTRINSIC
low complexity region 75 87 N/A INTRINSIC
low complexity region 154 168 N/A INTRINSIC
coiled coil region 423 452 N/A INTRINSIC
coiled coil region 504 533 N/A INTRINSIC
Pfam:CC2D2AN-C2 596 768 7.7e-44 PFAM
low complexity region 970 982 N/A INTRINSIC
C2 994 1154 2.3e-7 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 94% (67/71)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a coiled-coil and calcium binding domain protein that appears to play a critical role in cilia formation. Mutations in this gene cause Meckel syndrome type 6, as well as Joubert syndrome type 9. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2009]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality with multiorgan defects related to cilia biogenesis. Homozygotes for a gene trap allele show randomized body axis, holoprosencephaly, and microphthalmia. Homozygotes for an ENU-induced allele show heterotaxia, congenital heart anomalies, kidney and eye defects, polydactyly, and cleft palate. [provided by MGI curators]
Allele List at MGI

All alleles(5) : Targeted, other(4) Gene trapped(1)

Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930553M12Rik T A 4: 88,868,249 (GRCm38) H44L unknown Het
Abcc3 T C 11: 94,365,225 (GRCm38) K478R probably benign Het
Ank2 A T 3: 126,943,303 (GRCm38) probably benign Het
Apod A G 16: 31,311,132 (GRCm38) V2A probably benign Het
Armh4 C A 14: 49,773,698 (GRCm38) S184I probably damaging Het
Aspg T A 12: 112,126,390 (GRCm38) D530E probably damaging Het
Atxn7 A T 14: 14,100,878 (GRCm38) T855S probably benign Het
Blmh G C 11: 76,968,625 (GRCm38) G351R probably damaging Het
Cenpp T C 13: 49,465,757 (GRCm38) E188G probably damaging Het
Cimip3 A G 17: 47,437,189 (GRCm38) probably null Het
Creg2 T C 1: 39,623,208 (GRCm38) E252G probably benign Het
Dot1l A G 10: 80,787,023 (GRCm38) Y636C probably damaging Het
Dpy30 A G 17: 74,307,840 (GRCm38) I36T probably benign Het
Eed A G 7: 89,964,727 (GRCm38) probably null Het
Fmn1 A G 2: 113,365,008 (GRCm38) D351G unknown Het
Fra10ac1 C T 19: 38,224,119 (GRCm38) probably benign Het
Gdpd4 T A 7: 97,973,929 (GRCm38) I249N probably damaging Het
Glb1l2 A T 9: 26,765,127 (GRCm38) V600D probably null Het
Gm13889 A T 2: 93,957,114 (GRCm38) probably benign Het
Gm17654 T A 14: 43,575,870 (GRCm38) N188Y Het
Gm3327 T C 14: 44,126,275 (GRCm38) F112S Het
H2-Ab1 T C 17: 34,263,342 (GRCm38) S11P probably benign Het
Hcn4 T C 9: 58,855,717 (GRCm38) S522P unknown Het
Hfm1 T C 5: 106,896,043 (GRCm38) T576A probably benign Het
Hoxa1 A G 6: 52,158,200 (GRCm38) S8P probably damaging Het
Hoxd13 A G 2: 74,669,025 (GRCm38) Y239C probably damaging Het
Ifih1 T A 2: 62,610,515 (GRCm38) I485L probably benign Het
Ift52 G A 2: 163,029,796 (GRCm38) V183M probably damaging Het
Ikbkb A G 8: 22,671,642 (GRCm38) V410A possibly damaging Het
Il22ra1 G A 4: 135,751,162 (GRCm38) V515I probably benign Het
Klk1b3 A T 7: 44,201,439 (GRCm38) I132F probably damaging Het
Limk2 T C 11: 3,355,448 (GRCm38) T206A possibly damaging Het
Llph A T 10: 120,231,335 (GRCm38) probably benign Het
Lrrc26 T A 2: 25,290,075 (GRCm38) D29E probably benign Het
Ltbp4 A G 7: 27,307,766 (GRCm38) probably null Het
Mageb3 A T 2: 121,954,492 (GRCm38) V243E probably damaging Het
Mfhas1 T C 8: 35,588,638 (GRCm38) V89A probably benign Het
Mycbp2 G A 14: 103,156,098 (GRCm38) T2899I possibly damaging Het
Nckap5 A T 1: 126,258,712 (GRCm38) probably null Het
Ncor1 T C 11: 62,384,793 (GRCm38) D530G probably null Het
Or10ag55-ps1 T A 2: 87,284,431 (GRCm38) M47K probably benign Het
Or56a3b C T 7: 105,121,963 (GRCm38) R169* probably null Het
Pax4 A G 6: 28,446,323 (GRCm38) I57T probably damaging Het
Peg12 T C 7: 62,463,963 (GRCm38) I129V possibly damaging Het
Pex6 G A 17: 46,720,521 (GRCm38) A416T probably benign Het
Pgghg G A 7: 140,944,718 (GRCm38) R326H probably benign Het
Pgk2 T A 17: 40,208,475 (GRCm38) M21L probably benign Het
Polh A T 17: 46,198,716 (GRCm38) W64R probably benign Het
Rassf7 T A 7: 141,217,643 (GRCm38) H256Q probably benign Het
Rc3h2 A G 2: 37,375,246 (GRCm38) M1184T probably benign Het
Ror1 A T 4: 100,442,239 (GRCm38) E936D probably benign Het
Skic3 G A 13: 76,134,960 (GRCm38) A769T probably damaging Het
Slco1b2 A T 6: 141,672,248 (GRCm38) T440S probably damaging Het
Specc1 T A 11: 62,117,778 (GRCm38) V40E probably damaging Het
Tarbp1 T A 8: 126,474,495 (GRCm38) S191C possibly damaging Het
Timm22 A G 11: 76,407,245 (GRCm38) E14G possibly damaging Het
Tpp2 T A 1: 43,983,158 (GRCm38) D905E probably damaging Het
Trav7-5 T C 14: 53,531,299 (GRCm38) L108P probably damaging Het
Ttc9b A G 7: 27,654,242 (GRCm38) T106A probably benign Het
Ttn T C 2: 76,714,668 (GRCm38) S32697G probably damaging Het
Usp17la T G 7: 104,861,307 (GRCm38) L373R probably benign Het
Vmn1r113 A G 7: 20,787,502 (GRCm38) N73S probably benign Het
Vmn1r42 T C 6: 89,845,069 (GRCm38) T173A possibly damaging Het
Vmn2r106 A G 17: 20,278,920 (GRCm38) V243A probably damaging Het
Vmn2r111 T C 17: 22,559,051 (GRCm38) N549S possibly damaging Het
Vmn2r25 T A 6: 123,823,610 (GRCm38) D591V probably damaging Het
Zc3h13 T C 14: 75,321,787 (GRCm38) S379P probably benign Het
Zfp870 T C 17: 32,883,482 (GRCm38) Y292C probably damaging Het
Zfp977 A T 7: 42,580,362 (GRCm38) N246K possibly damaging Het
Zp1 G A 19: 10,918,740 (GRCm38) T207M probably damaging Het
Other mutations in Cc2d2a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00392:Cc2d2a APN 5 43,724,380 (GRCm38) splice site probably benign
IGL00937:Cc2d2a APN 5 43,688,122 (GRCm38) critical splice acceptor site probably null
IGL01322:Cc2d2a APN 5 43,689,003 (GRCm38) missense probably benign 0.00
IGL01349:Cc2d2a APN 5 43,723,784 (GRCm38) missense probably benign 0.01
IGL01448:Cc2d2a APN 5 43,684,185 (GRCm38) missense possibly damaging 0.65
IGL01871:Cc2d2a APN 5 43,688,969 (GRCm38) missense probably damaging 0.98
IGL01947:Cc2d2a APN 5 43,688,237 (GRCm38) missense probably damaging 0.96
IGL01976:Cc2d2a APN 5 43,683,115 (GRCm38) missense probably benign 0.02
IGL02113:Cc2d2a APN 5 43,685,248 (GRCm38) splice site probably null
IGL02364:Cc2d2a APN 5 43,735,450 (GRCm38) missense probably damaging 1.00
IGL02448:Cc2d2a APN 5 43,683,205 (GRCm38) splice site probably benign
IGL02458:Cc2d2a APN 5 43,718,554 (GRCm38) missense probably benign 0.01
IGL02542:Cc2d2a APN 5 43,688,910 (GRCm38) splice site probably benign
IGL02834:Cc2d2a APN 5 43,714,521 (GRCm38) nonsense probably null
IGL02940:Cc2d2a APN 5 43,728,294 (GRCm38) splice site probably null
IGL03003:Cc2d2a APN 5 43,671,266 (GRCm38) missense probably benign 0.22
IGL03183:Cc2d2a APN 5 43,732,379 (GRCm38) missense probably damaging 1.00
C9142:Cc2d2a UTSW 5 43,735,457 (GRCm38) splice site probably benign
P0028:Cc2d2a UTSW 5 43,684,199 (GRCm38) missense probably benign
R0193:Cc2d2a UTSW 5 43,736,118 (GRCm38) missense probably damaging 1.00
R0201:Cc2d2a UTSW 5 43,737,512 (GRCm38) missense probably damaging 1.00
R0211:Cc2d2a UTSW 5 43,688,266 (GRCm38) splice site probably null
R0243:Cc2d2a UTSW 5 43,696,638 (GRCm38) splice site probably benign
R0317:Cc2d2a UTSW 5 43,706,901 (GRCm38) critical splice donor site probably null
R0453:Cc2d2a UTSW 5 43,703,294 (GRCm38) missense probably benign 0.00
R0558:Cc2d2a UTSW 5 43,724,387 (GRCm38) splice site probably benign
R0624:Cc2d2a UTSW 5 43,730,029 (GRCm38) missense probably benign
R0634:Cc2d2a UTSW 5 43,681,381 (GRCm38) splice site probably benign
R1503:Cc2d2a UTSW 5 43,695,239 (GRCm38) missense probably damaging 1.00
R1635:Cc2d2a UTSW 5 43,722,470 (GRCm38) missense probably damaging 1.00
R1686:Cc2d2a UTSW 5 43,739,371 (GRCm38) missense possibly damaging 0.81
R1707:Cc2d2a UTSW 5 43,723,688 (GRCm38) splice site probably null
R1715:Cc2d2a UTSW 5 43,718,661 (GRCm38) missense probably damaging 0.97
R1765:Cc2d2a UTSW 5 43,714,531 (GRCm38) missense probably damaging 0.99
R1794:Cc2d2a UTSW 5 43,688,252 (GRCm38) missense probably damaging 1.00
R1881:Cc2d2a UTSW 5 43,740,828 (GRCm38) missense probably damaging 0.99
R1917:Cc2d2a UTSW 5 43,706,222 (GRCm38) missense probably damaging 1.00
R2005:Cc2d2a UTSW 5 43,726,373 (GRCm38) critical splice donor site probably null
R2201:Cc2d2a UTSW 5 43,684,033 (GRCm38) splice site probably benign
R2244:Cc2d2a UTSW 5 43,732,433 (GRCm38) missense probably damaging 1.00
R2368:Cc2d2a UTSW 5 43,703,888 (GRCm38) missense probably benign
R2442:Cc2d2a UTSW 5 43,671,305 (GRCm38) critical splice donor site probably null
R2511:Cc2d2a UTSW 5 43,735,395 (GRCm38) missense probably damaging 0.99
R3023:Cc2d2a UTSW 5 43,685,251 (GRCm38) splice site probably null
R3147:Cc2d2a UTSW 5 43,709,155 (GRCm38) missense probably damaging 1.00
R3148:Cc2d2a UTSW 5 43,709,155 (GRCm38) missense probably damaging 1.00
R3426:Cc2d2a UTSW 5 43,736,109 (GRCm38) missense probably benign 0.00
R3609:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3610:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3611:Cc2d2a UTSW 5 43,712,326 (GRCm38) missense probably damaging 0.99
R3839:Cc2d2a UTSW 5 43,718,714 (GRCm38) missense probably benign
R3870:Cc2d2a UTSW 5 43,718,691 (GRCm38) nonsense probably null
R4334:Cc2d2a UTSW 5 43,683,134 (GRCm38) missense probably benign 0.00
R4913:Cc2d2a UTSW 5 43,739,323 (GRCm38) missense probably benign 0.12
R5179:Cc2d2a UTSW 5 43,688,221 (GRCm38) missense possibly damaging 0.82
R5315:Cc2d2a UTSW 5 43,720,433 (GRCm38) missense probably damaging 0.99
R5352:Cc2d2a UTSW 5 43,706,213 (GRCm38) missense probably damaging 1.00
R5386:Cc2d2a UTSW 5 43,730,041 (GRCm38) missense probably benign 0.01
R5538:Cc2d2a UTSW 5 43,695,176 (GRCm38) missense possibly damaging 0.94
R5568:Cc2d2a UTSW 5 43,709,091 (GRCm38) missense probably damaging 0.99
R5618:Cc2d2a UTSW 5 43,729,907 (GRCm38) missense probably benign 0.00
R5653:Cc2d2a UTSW 5 43,722,462 (GRCm38) missense possibly damaging 0.81
R5817:Cc2d2a UTSW 5 43,712,418 (GRCm38) missense probably damaging 1.00
R5858:Cc2d2a UTSW 5 43,715,775 (GRCm38) missense probably damaging 1.00
R5905:Cc2d2a UTSW 5 43,712,426 (GRCm38) missense probably benign
R5912:Cc2d2a UTSW 5 43,720,430 (GRCm38) missense probably damaging 0.97
R6073:Cc2d2a UTSW 5 43,729,975 (GRCm38) missense probably damaging 1.00
R6084:Cc2d2a UTSW 5 43,668,673 (GRCm38) missense probably benign
R6142:Cc2d2a UTSW 5 43,703,198 (GRCm38) missense probably damaging 0.97
R6176:Cc2d2a UTSW 5 43,709,113 (GRCm38) missense probably benign 0.32
R6238:Cc2d2a UTSW 5 43,671,235 (GRCm38) missense probably benign 0.11
R6381:Cc2d2a UTSW 5 43,715,776 (GRCm38) missense possibly damaging 0.69
R6404:Cc2d2a UTSW 5 43,704,074 (GRCm38) missense possibly damaging 0.58
R6455:Cc2d2a UTSW 5 43,739,412 (GRCm38) missense possibly damaging 0.69
R6695:Cc2d2a UTSW 5 43,718,677 (GRCm38) missense probably damaging 0.99
R6805:Cc2d2a UTSW 5 43,681,331 (GRCm38) missense probably damaging 1.00
R6919:Cc2d2a UTSW 5 43,703,215 (GRCm38) missense probably benign 0.19
R6970:Cc2d2a UTSW 5 43,718,585 (GRCm38) missense probably damaging 1.00
R7024:Cc2d2a UTSW 5 43,733,929 (GRCm38) missense probably benign 0.10
R7071:Cc2d2a UTSW 5 43,709,113 (GRCm38) missense probably benign 0.13
R7098:Cc2d2a UTSW 5 43,683,139 (GRCm38) missense probably benign 0.00
R7366:Cc2d2a UTSW 5 43,729,990 (GRCm38) missense probably damaging 1.00
R7908:Cc2d2a UTSW 5 43,706,846 (GRCm38) missense probably benign 0.00
R7920:Cc2d2a UTSW 5 43,739,309 (GRCm38) missense probably benign 0.09
R7950:Cc2d2a UTSW 5 43,695,296 (GRCm38) critical splice donor site probably null
R8007:Cc2d2a UTSW 5 43,706,100 (GRCm38) missense possibly damaging 0.71
R8117:Cc2d2a UTSW 5 43,712,439 (GRCm38) missense probably damaging 1.00
R8123:Cc2d2a UTSW 5 43,710,554 (GRCm38) missense probably benign
R8179:Cc2d2a UTSW 5 43,699,953 (GRCm38) missense probably damaging 0.96
R8279:Cc2d2a UTSW 5 43,736,145 (GRCm38) missense probably benign 0.01
R8293:Cc2d2a UTSW 5 43,688,228 (GRCm38) missense probably damaging 0.97
R8480:Cc2d2a UTSW 5 43,685,144 (GRCm38) splice site probably null
R8482:Cc2d2a UTSW 5 43,695,239 (GRCm38) missense probably damaging 1.00
R8731:Cc2d2a UTSW 5 43,735,446 (GRCm38) missense probably damaging 1.00
R8780:Cc2d2a UTSW 5 43,739,350 (GRCm38) missense probably damaging 1.00
R8784:Cc2d2a UTSW 5 43,703,303 (GRCm38) missense possibly damaging 0.90
R8871:Cc2d2a UTSW 5 43,699,943 (GRCm38) missense possibly damaging 0.71
R8972:Cc2d2a UTSW 5 43,710,542 (GRCm38) missense probably benign
R9122:Cc2d2a UTSW 5 43,673,739 (GRCm38) missense probably null 0.07
R9125:Cc2d2a UTSW 5 43,703,221 (GRCm38) missense probably benign
R9203:Cc2d2a UTSW 5 43,733,837 (GRCm38) missense probably benign 0.01
R9310:Cc2d2a UTSW 5 43,695,146 (GRCm38) missense probably damaging 1.00
R9343:Cc2d2a UTSW 5 43,718,657 (GRCm38) missense probably damaging 1.00
R9353:Cc2d2a UTSW 5 43,703,349 (GRCm38) critical splice donor site probably null
Z1177:Cc2d2a UTSW 5 43,703,204 (GRCm38) missense probably benign
Predicted Primers PCR Primer
(F):5'- CCTGGCAGAACTGTGTTAGAAG -3'
(R):5'- GAGGCTGTTCGCTCATAGTTTC -3'

Sequencing Primer
(F):5'- AGTCGATGTGGTATAGGAAGCTG -3'
(R):5'- AGGCTGTTCGCTCATAGTTTCTAAAC -3'
Posted On 2019-05-13