Mutagenetix > Incidental Mutation

Incidental Mutation 'R7075:Psg21'

549157

Institutional Source

Beutler Lab

Gene Symbol

Psg21

Ensembl Gene

ENSMUSG00000070796

Gene Name

pregnancy-specific beta-1-glycoprotein 21

Synonyms

1600019C01Rik, 1600026N13Rik, 1600025N01Rik, cea8

MMRRC Submission

045170-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R7075 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

18380661-18390650 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 18388786 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 102 (N102S)

Ref Sequence

ENSEMBL: ENSMUSP00000092387 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094793] [ENSMUST00000182128]

AlphaFold

Q9DAV5

Predicted Effect

probably damaging
Transcript: ENSMUST00000094793
AA Change: N102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000092387
Gene: ENSMUSG00000070796
AA Change: N102S

Domain	Start	End	E-Value	Type
IG	39	138	3.04e-3	SMART
IG	159	260	7.25e-1	SMART
IG	276	375	1.25e-4	SMART
IGc2	393	457	1.47e-10	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000182128
AA Change: N102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138173
Gene: ENSMUSG00000070796
AA Change: N102S

Domain	Start	End	E-Value	Type
IG	39	138	3.04e-3	SMART
IG	159	260	7.25e-1	SMART
IG	276	375	1.25e-4	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

95% (60/63)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acyp1	A	T	12: 85,325,782 (GRCm39)	H72Q	unknown	Het
Afmid	T	A	11: 117,726,531 (GRCm39)	D218E	probably benign	Het
Ankhd1	T	C	18: 36,693,042 (GRCm39)	V1A		Het
Atf7ip	T	C	6: 136,573,513 (GRCm39)		probably null	Het
BC024139	C	T	15: 76,008,599 (GRCm39)	V326I	probably benign	Het
Bfsp1	T	A	2: 143,690,885 (GRCm39)	Q159L	probably damaging	Het
Cct2	A	T	10: 116,897,370 (GRCm39)	W125R	unknown	Het
Cnksr3	G	T	10: 7,102,931 (GRCm39)	T147K	probably benign	Het
Colq	C	G	14: 31,274,866 (GRCm39)	G101R	probably damaging	Het
Dlg5	G	T	14: 24,227,865 (GRCm39)	T352K	possibly damaging	Het
Dusp9	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	TAAAGCGGAGGCCAAAGCGGAGGCCAAAGCGGAGGCTAAAGCGGAGGCCAAAGCGGAGGCCAAAG	X: 72,684,217 (GRCm39)		probably benign	Het
Ebna1bp2	T	C	4: 118,479,299 (GRCm39)	V119A	probably benign	Het
Eif2ak4	C	T	2: 118,251,291 (GRCm39)	Q318*	probably null	Het
Eif2b1	G	A	5: 124,709,314 (GRCm39)	T286M	probably damaging	Het
Fam53b	G	T	7: 132,361,352 (GRCm39)	D225E	probably damaging	Het
Fh1	A	G	1: 175,435,421 (GRCm39)	I354T	probably benign	Het
Fnbp1	T	C	2: 30,948,926 (GRCm39)	H206R	probably benign	Het
Gabrg3	A	T	7: 56,973,444 (GRCm39)	D74E	probably damaging	Het
Galnt18	A	T	7: 111,155,595 (GRCm39)	V246E	possibly damaging	Het
Glt6d1	T	C	2: 25,685,292 (GRCm39)	R44G	probably benign	Het
Gm17087	T	C	17: 8,785,635 (GRCm39)	M23V	probably benign	Het
Gpr160	A	T	3: 30,950,926 (GRCm39)	I333L	possibly damaging	Het
Hars1	T	C	18: 36,905,408 (GRCm39)	N142S	possibly damaging	Het
Hmgcll1	T	C	9: 75,963,834 (GRCm39)	V97A	possibly damaging	Het
Itih4	T	G	14: 30,614,560 (GRCm39)	V474G	probably damaging	Het
Itprid2	T	A	2: 79,466,004 (GRCm39)	S41T	probably damaging	Het
Keap1	C	T	9: 21,142,552 (GRCm39)	V568I	probably benign	Het
Kifc5b	A	G	17: 27,144,872 (GRCm39)	M633V	probably benign	Het
Lsm4	A	G	8: 71,130,435 (GRCm39)	E18G	probably damaging	Het
Meox1	T	A	11: 101,784,569 (GRCm39)	Q88L	probably damaging	Het
Mettl25	T	C	10: 105,665,785 (GRCm39)	N147S	possibly damaging	Het
Mphosph9	A	C	5: 124,458,922 (GRCm39)	W83G	probably damaging	Het
Or1j15	T	C	2: 36,459,192 (GRCm39)	I194T	probably benign	Het
Or5ak22	T	C	2: 85,230,544 (GRCm39)	D111G	probably damaging	Het
Or7e170	T	A	9: 19,795,359 (GRCm39)	M81L	probably benign	Het
Or8b4	T	C	9: 37,830,370 (GRCm39)	V139A	probably benign	Het
Or8h8	T	G	2: 86,752,990 (GRCm39)	K295N	possibly damaging	Het
Or9g4	T	A	2: 85,505,168 (GRCm39)	Y109F		Het
Otogl	G	T	10: 107,614,790 (GRCm39)	T1954K	probably benign	Het
Padi2	T	C	4: 140,660,528 (GRCm39)	V336A	probably damaging	Het
Phf21a	C	T	2: 92,190,724 (GRCm39)	Q675*	probably null	Het
Ppip5k1	T	C	2: 121,152,231 (GRCm39)	E1092G	probably damaging	Het
Ralgapa1	C	A	12: 55,867,508 (GRCm39)	Q15H	possibly damaging	Het
Rbm26	A	T	14: 105,398,043 (GRCm39)	D26E	unknown	Het
Rbp4	T	C	19: 38,112,509 (GRCm39)	Y152C	probably damaging	Het
Recql4	A	G	15: 76,590,624 (GRCm39)	V646A	possibly damaging	Het
Rnf220	A	T	4: 117,143,079 (GRCm39)	M63K	probably benign	Het
Selenok	T	C	14: 29,692,024 (GRCm39)	S21P	probably damaging	Het
Senp1	A	G	15: 97,956,207 (GRCm39)	V404A	probably benign	Het
Sh3yl1	A	G	12: 30,990,165 (GRCm39)		probably null	Het
Snx32	A	G	19: 5,547,018 (GRCm39)	L275P	probably damaging	Het
Stat5a	T	C	11: 100,770,519 (GRCm39)	V519A	possibly damaging	Het
Tbc1d10b	A	T	7: 126,802,410 (GRCm39)	V388E	possibly damaging	Het
Tdrd6	A	G	17: 43,936,065 (GRCm39)	V1661A	probably benign	Het
Tmem63a	T	A	1: 180,788,714 (GRCm39)	F350L	probably damaging	Het
Trio	A	T	15: 27,898,086 (GRCm39)	I401K	unknown	Het
Ttn	T	C	2: 76,547,173 (GRCm39)	E32291G	probably damaging	Het
Tubgcp5	G	T	7: 55,479,155 (GRCm39)	V1002L	probably benign	Het
Vav3	C	T	3: 109,433,240 (GRCm39)	T410I	possibly damaging	Het
Vmn1r1	A	T	1: 181,985,597 (GRCm39)	F23I	probably benign	Het
Vmn2r84	T	A	10: 130,226,941 (GRCm39)	Q299L	probably damaging	Het
Vmn2r85	T	A	10: 130,258,557 (GRCm39)	E499D	probably benign	Het

Other mutations in Psg21

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01571:Psg21	APN	7	18,388,750 (GRCm39)	missense	probably damaging	1.00
IGL02390:Psg21	APN	7	18,386,556 (GRCm39)	missense	probably benign	0.11
IGL02548:Psg21	APN	7	18,388,961 (GRCm39)	missense	possibly damaging	0.89
IGL03001:Psg21	APN	7	18,386,410 (GRCm39)	missense	probably benign	0.03
IGL03135:Psg21	APN	7	18,388,843 (GRCm39)	missense	probably benign	0.00
R0131:Psg21	UTSW	7	18,388,793 (GRCm39)	missense	probably benign	0.39
R0551:Psg21	UTSW	7	18,386,565 (GRCm39)	critical splice acceptor site	probably null
R1512:Psg21	UTSW	7	18,390,425 (GRCm39)	missense	probably benign	0.00
R1874:Psg21	UTSW	7	18,384,741 (GRCm39)	missense	probably benign	0.15
R1993:Psg21	UTSW	7	18,388,695 (GRCm39)	missense	probably benign	0.04
R2327:Psg21	UTSW	7	18,386,378 (GRCm39)	missense	possibly damaging	0.61
R3414:Psg21	UTSW	7	18,386,305 (GRCm39)	missense	probably damaging	1.00
R4422:Psg21	UTSW	7	18,381,257 (GRCm39)	missense	probably damaging	1.00
R5138:Psg21	UTSW	7	18,390,453 (GRCm39)	start codon destroyed	probably null	0.94
R5623:Psg21	UTSW	7	18,388,939 (GRCm39)	missense	probably damaging	1.00
R5686:Psg21	UTSW	7	18,386,183 (GRCm39)	intron	probably benign
R6166:Psg21	UTSW	7	18,390,664 (GRCm39)	unclassified	probably benign
R6177:Psg21	UTSW	7	18,386,279 (GRCm39)	missense	possibly damaging	0.64
R6190:Psg21	UTSW	7	18,388,926 (GRCm39)	missense	possibly damaging	0.61
R6210:Psg21	UTSW	7	18,386,270 (GRCm39)	missense	probably damaging	1.00
R6482:Psg21	UTSW	7	18,388,664 (GRCm39)	splice site	probably null
R6729:Psg21	UTSW	7	18,386,516 (GRCm39)	missense	probably damaging	1.00
R6866:Psg21	UTSW	7	18,386,209 (GRCm39)	missense	probably damaging	1.00
R6992:Psg21	UTSW	7	18,388,668 (GRCm39)	critical splice donor site	probably null
R7081:Psg21	UTSW	7	18,388,774 (GRCm39)	nonsense	probably null
R7098:Psg21	UTSW	7	18,386,470 (GRCm39)	missense	probably damaging	1.00
R7582:Psg21	UTSW	7	18,381,128 (GRCm39)	makesense	probably null
R7588:Psg21	UTSW	7	18,381,134 (GRCm39)	missense	probably benign	0.00
R7607:Psg21	UTSW	7	18,388,708 (GRCm39)	missense	probably benign	0.02
R7830:Psg21	UTSW	7	18,381,223 (GRCm39)	missense	probably damaging	1.00
R7964:Psg21	UTSW	7	18,381,136 (GRCm39)	missense	probably benign	0.01
R8758:Psg21	UTSW	7	18,384,678 (GRCm39)	missense	probably damaging	1.00
R8972:Psg21	UTSW	7	18,381,293 (GRCm39)	missense	probably benign	0.03
R8988:Psg21	UTSW	7	18,386,389 (GRCm39)	missense	probably benign	0.00
R9119:Psg21	UTSW	7	18,381,409 (GRCm39)	missense	probably benign	0.14
R9446:Psg21	UTSW	7	18,388,865 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGGCCTGATACTTCTATGTGCC -3'
(R):5'- CACCACTGCTAGTGTCACCATC -3'

Sequencing Primer
(F):5'- CCTGATACTTCTATGTGCCGAGTG -3'
(R):5'- GCTAGTGTCACCATCCAGTCAC -3'

Posted On

2019-05-15