Mutagenetix > Incidental Mutation

Incidental Mutation 'R7091:Tnfsf4'

550189

Institutional Source

Beutler Lab

Gene Symbol

Tnfsf4

Ensembl Gene

ENSMUSG00000026700

Gene Name

tumor necrosis factor (ligand) superfamily, member 4

Synonyms

OX40L, TXGP1, gp34, CD134L, Txgp1l, Ath-1, Ath1

MMRRC Submission

045185-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.108) question?

Stock #

R7091 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

161223009-161245777 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 161223268 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 39 (M39K)

Ref Sequence

ENSEMBL: ENSMUSP00000028024 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028024]

AlphaFold

P43488

PDB Structure

The X-ray crystal structure of murine OX40L [X-RAY DIFFRACTION]
Crystal structure of murine OX40L bound to human OX40 [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000028024
AA Change: M39K

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000028024
Gene: ENSMUSG00000026700
AA Change: M39K

Domain	Start	End	E-Value	Type
TNF	59	187	2.03e-37	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

98% (56/57)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cytokine of the tumor necrosis factor (TNF) ligand family. The encoded protein functions in T cell antigen-presenting cell (APC) interactions and mediates adhesion of activated T cells to endothelial cells. Polymorphisms in this gene have been associated with Sjogren's syndrome and systemic lupus erythematosus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
PHENOTYPE: Homozygous inactivation of this gene leads to an impaired contact hypersensitivity response due to defects in T cell priming and cytokine production. Homozygosity for a null allele confers resistance to autoimmune diabetes development in nonobese diabetic mice. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abhd18	A	C	3: 40,871,173 (GRCm39)	I111L	probably damaging	Het
Ank1	A	G	8: 23,548,679 (GRCm39)	D11G	probably benign	Het
Ank2	G	T	3: 126,817,000 (GRCm39)	Q472K	probably damaging	Het
Apbb2	A	T	5: 66,470,677 (GRCm39)	L520H	probably damaging	Het
Baat	T	C	4: 49,499,692 (GRCm39)	K205E	probably benign	Het
Brca1	T	A	11: 101,417,253 (GRCm39)	M294L	probably benign	Het
Capn1	A	G	19: 6,041,586 (GRCm39)	M641T	possibly damaging	Het
Cluap1	T	A	16: 3,758,670 (GRCm39)	D377E	probably benign	Het
Col6a2	C	T	10: 76,450,925 (GRCm39)	V39I	unknown	Het
Crybg3	T	A	16: 59,377,531 (GRCm39)	D1241V	possibly damaging	Het
Dnah10	A	G	5: 124,893,206 (GRCm39)	K3380R	probably benign	Het
Eml5	T	C	12: 98,768,733 (GRCm39)	I1400M	probably benign	Het
Fancd2	A	G	6: 113,522,062 (GRCm39)	D219G	probably damaging	Het
Fras1	A	G	5: 96,856,535 (GRCm39)	S1973G	probably benign	Het
Fsd1	G	A	17: 56,300,876 (GRCm39)	R245H	probably damaging	Het
G3bp1	T	A	11: 55,387,047 (GRCm39)	H271Q	possibly damaging	Het
Glce	A	G	9: 61,967,870 (GRCm39)	V427A	probably damaging	Het
Gm5141	T	C	13: 62,921,778 (GRCm39)	T464A	possibly damaging	Het
Gulp1	T	A	1: 44,805,294 (GRCm39)	F128I	probably damaging	Het
H2-T13	T	C	17: 36,394,833 (GRCm39)	E30G	possibly damaging	Het
Hcrtr1	A	C	4: 130,024,707 (GRCm39)	L393W	probably damaging	Het
Heg1	T	C	16: 33,547,090 (GRCm39)	S650P	probably benign	Het
Hspa4l	T	A	3: 40,736,024 (GRCm39)	N569K	probably benign	Het
Ifi206	A	G	1: 173,301,441 (GRCm39)	F746L	unknown	Het
Ivl	T	C	3: 92,479,549 (GRCm39)	D172G	possibly damaging	Het
Lrp5	A	T	19: 3,680,184 (GRCm39)	D433E	probably damaging	Het
Mgam	T	C	6: 40,745,210 (GRCm39)	S1826P	possibly damaging	Het
Ms4a18	A	T	19: 10,986,092 (GRCm39)	L206M	probably damaging	Het
Msln	A	T	17: 25,969,054 (GRCm39)	C444S	probably damaging	Het
Mta1	A	G	12: 113,100,022 (GRCm39)	D644G	probably damaging	Het
Muc5ac	G	C	7: 141,363,424 (GRCm39)		probably benign	Het
Naa15	T	C	3: 51,366,177 (GRCm39)		probably null	Het
Nadk	A	G	4: 155,672,215 (GRCm39)	H302R	probably benign	Het
Neb	T	A	2: 52,146,124 (GRCm39)	N15I		Het
Nup153	A	T	13: 46,837,404 (GRCm39)	S1273T	probably benign	Het
Ofcc1	A	G	13: 40,226,243 (GRCm39)	I763T	probably damaging	Het
Or4b13	T	C	2: 90,082,807 (GRCm39)	Y175C	probably damaging	Het
Oxsr1	T	C	9: 119,113,727 (GRCm39)	I107V	probably benign	Het
Prmt5	A	G	14: 54,748,799 (GRCm39)		probably null	Het
Ptk2	G	A	15: 73,093,658 (GRCm39)	P854S	possibly damaging	Het
Ranbp6	A	G	19: 29,790,116 (GRCm39)	S79P	probably damaging	Het
Reln	T	C	5: 22,104,027 (GRCm39)	I3315V	probably null	Het
Rnf223	T	C	4: 156,217,156 (GRCm39)	V177A	probably benign	Het
Slc20a1	C	T	2: 129,050,192 (GRCm39)	T450M	possibly damaging	Het
Smg5	C	T	3: 88,258,654 (GRCm39)	P542S	probably benign	Het
Sorl1	T	A	9: 41,913,930 (GRCm39)	Q1333L	probably benign	Het
Spag5	T	A	11: 78,204,017 (GRCm39)		probably null	Het
Spopfm1	T	C	3: 94,173,945 (GRCm39)	F314L	probably damaging	Het
Tdp2	T	A	13: 25,022,207 (GRCm39)	F209I	probably damaging	Het
Tgm4	C	A	9: 122,869,525 (GRCm39)	L35M	probably damaging	Het
Tma7	A	G	9: 108,911,580 (GRCm39)		probably benign	Het
Tmprss4	A	T	9: 45,095,571 (GRCm39)	V91D	probably damaging	Het
Ttn	T	A	2: 76,543,912 (GRCm39)	T33025S	probably benign	Het
Tut1	A	G	19: 8,943,175 (GRCm39)	H754R	probably benign	Het
Vmn2r27	T	G	6: 124,200,904 (GRCm39)	Q351P	possibly damaging	Het
Wee2	G	T	6: 40,438,936 (GRCm39)	G353V	probably benign	Het
Zfp747l1	C	A	7: 126,983,534 (GRCm39)	A523S	possibly damaging	Het
Zfp879	T	A	11: 50,724,222 (GRCm39)	H278L	probably damaging	Het

Other mutations in Tnfsf4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02072:Tnfsf4	APN	1	161,244,860 (GRCm39)	missense	probably damaging	1.00
IGL02400:Tnfsf4	APN	1	161,223,276 (GRCm39)	missense	possibly damaging	0.92
IGL03028:Tnfsf4	APN	1	161,223,213 (GRCm39)	missense	possibly damaging	0.90
R1271:Tnfsf4	UTSW	1	161,223,274 (GRCm39)	missense	probably damaging	0.99
R3701:Tnfsf4	UTSW	1	161,244,778 (GRCm39)	missense	possibly damaging	0.48
R4506:Tnfsf4	UTSW	1	161,244,745 (GRCm39)	missense	probably damaging	0.98
R5276:Tnfsf4	UTSW	1	161,244,584 (GRCm39)	missense	possibly damaging	0.76
R5935:Tnfsf4	UTSW	1	161,244,819 (GRCm39)	missense	probably damaging	0.99
R6931:Tnfsf4	UTSW	1	161,244,644 (GRCm39)	missense	possibly damaging	0.81
R7225:Tnfsf4	UTSW	1	161,244,821 (GRCm39)	missense	possibly damaging	0.94
R7646:Tnfsf4	UTSW	1	161,244,733 (GRCm39)	missense	possibly damaging	0.50
R7651:Tnfsf4	UTSW	1	161,244,593 (GRCm39)	missense	probably benign	0.35
R9093:Tnfsf4	UTSW	1	161,244,629 (GRCm39)	missense	probably damaging	1.00
R9258:Tnfsf4	UTSW	1	161,244,814 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- GGGACCTTTATCTTCTGACCCG -3'
(R):5'- ACAATCTCTTGGTGGCAGGG -3'

Sequencing Primer
(F):5'- CTCCTTTGTGGTGAAGAGCAGTC -3'
(R):5'- TTGGTGGCAGGGGCAGG -3'

Posted On

2019-05-15