Mutagenetix > Incidental Mutation

Incidental Mutation 'R0615:Zfp474'

55039

Institutional Source

Beutler Lab

Gene Symbol

Zfp474

Ensembl Gene

ENSMUSG00000046886

Gene Name

zinc finger protein 474

Synonyms

4933409D10Rik

MMRRC Submission

038804-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.059) question?

Stock #

R0615 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

52748987-52772902 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 52771421 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 25 (L25F)

Ref Sequence

ENSEMBL: ENSMUSP00000147873 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072666] [ENSMUST00000209270]

AlphaFold

Q6V5K9

Predicted Effect

probably benign
Transcript: ENSMUST00000072666
AA Change: L25F

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000072453
Gene: ENSMUSG00000046886
AA Change: L25F

Domain	Start	End	E-Value	Type
Pfam:zf-C2HC_2	90	114	1.8e-10	PFAM
Pfam:zf-C2HC_2	161	185	3.3e-13	PFAM
Pfam:zf-C2HC_2	217	241	1.2e-10	PFAM
low complexity region	250	267	N/A	INTRINSIC
Pfam:zf-C2HC_2	280	304	1.1e-14	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000209270
AA Change: L25F

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)

Meta Mutation Damage Score

0.0855

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.4%
20x: 94.8%

Validation Efficiency

100% (57/57)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933411K16Rik	T	C	19: 42,040,962 (GRCm39)	I31T	possibly damaging	Het
Abca13	A	G	11: 9,206,197 (GRCm39)	I166V	probably damaging	Het
Acaa2	G	T	18: 74,931,517 (GRCm39)	V238L	probably benign	Het
Ahsg	A	T	16: 22,717,805 (GRCm39)	I296F	possibly damaging	Het
Aspm	T	A	1: 139,415,027 (GRCm39)	V1436D	probably damaging	Het
Ate1	A	T	7: 130,115,563 (GRCm39)		probably benign	Het
Atosa	T	A	9: 74,911,570 (GRCm39)	Y14N	probably damaging	Het
Atp1a4	A	T	1: 172,059,627 (GRCm39)		probably benign	Het
Aurkc	A	T	7: 7,005,402 (GRCm39)	I223L	possibly damaging	Het
Bckdha	G	T	7: 25,341,210 (GRCm39)	D50E	probably benign	Het
Brf2	C	T	8: 27,614,059 (GRCm39)	E376K	probably benign	Het
Cdk9	C	A	2: 32,599,813 (GRCm39)	L141F	possibly damaging	Het
Cgn	A	C	3: 94,678,024 (GRCm39)		probably benign	Het
Clcn1	G	A	6: 42,282,509 (GRCm39)	V526I	probably damaging	Het
Cnot2	A	G	10: 116,334,141 (GRCm39)	V343A	possibly damaging	Het
Commd2	A	T	3: 57,554,116 (GRCm39)	V195D	possibly damaging	Het
Cubn	C	T	2: 13,365,063 (GRCm39)		probably null	Het
Eif2ak4	C	T	2: 118,266,666 (GRCm39)	T729M	probably damaging	Het
Elac1	A	T	18: 73,871,954 (GRCm39)	V347E	probably damaging	Het
Fam209	T	C	2: 172,316,053 (GRCm39)	S143P	probably benign	Het
Fam20c	G	A	5: 138,793,241 (GRCm39)	R454Q	probably damaging	Het
Faxc	C	T	4: 21,958,608 (GRCm39)	S255L	probably benign	Het
Fem1al	C	A	11: 29,774,515 (GRCm39)	R314L	probably damaging	Het
Foxj1	T	C	11: 116,224,908 (GRCm39)	D153G	possibly damaging	Het
Gm6605	C	A	7: 38,147,699 (GRCm39)		noncoding transcript	Het
Lmo7	T	A	14: 102,114,295 (GRCm39)	Y12*	probably null	Het
Matn3	T	G	12: 9,013,594 (GRCm39)	C425W	probably damaging	Het
Mmd2	A	T	5: 142,550,668 (GRCm39)	M190K	probably benign	Het
Morn2	A	T	17: 80,603,026 (GRCm39)	T102S	probably damaging	Het
Nr3c2	A	C	8: 77,912,518 (GRCm39)	T710P	probably benign	Het
Nrros	C	A	16: 31,962,903 (GRCm39)	L343F	probably damaging	Het
Ntrk2	C	T	13: 59,276,000 (GRCm39)	Q767*	probably null	Het
Or2h2c	G	C	17: 37,422,347 (GRCm39)	L176V	probably benign	Het
Or4k47	C	T	2: 111,452,264 (GRCm39)	D52N	possibly damaging	Het
Plekhf2	C	T	4: 10,991,330 (GRCm39)	R4H	probably benign	Het
Ppox	A	G	1: 171,105,387 (GRCm39)		probably benign	Het
Qprt	T	A	7: 126,708,248 (GRCm39)	D61V	probably damaging	Het
Reln	A	G	5: 22,215,148 (GRCm39)	V1101A	probably benign	Het
Sbno1	T	C	5: 124,548,202 (GRCm39)	N124D	probably damaging	Het
Scx	C	T	15: 76,342,295 (GRCm39)	P165L	probably benign	Het
Sema6d	T	C	2: 124,496,055 (GRCm39)		probably benign	Het
Serf2	T	C	2: 121,281,336 (GRCm39)	F92L	probably benign	Het
Synpo2	A	T	3: 122,910,936 (GRCm39)	N236K	probably damaging	Het
Tbc1d32	C	A	10: 56,100,736 (GRCm39)	D81Y	probably benign	Het
Terf2	G	A	8: 107,809,622 (GRCm39)	T232I	possibly damaging	Het
Tpd52l2	A	G	2: 181,143,744 (GRCm39)	E50G	probably damaging	Het
Tprn	A	G	2: 25,154,210 (GRCm39)	E504G	probably damaging	Het
Tufm	G	T	7: 126,086,654 (GRCm39)	R12L	probably benign	Het
Vmn2r8	A	G	5: 108,947,195 (GRCm39)	F519S	probably damaging	Het
Vwa8	T	C	14: 79,145,590 (GRCm39)	V89A	probably benign	Het
Wnt3	T	C	11: 103,703,207 (GRCm39)	I230T	possibly damaging	Het
Zan	A	T	5: 137,466,693 (GRCm39)	F388Y	probably damaging	Het

Other mutations in Zfp474

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Zfp474	APN	18	52,771,565 (GRCm39)	missense	possibly damaging	0.52
IGL01651:Zfp474	APN	18	52,771,655 (GRCm39)	missense	probably damaging	1.00
IGL01750:Zfp474	APN	18	52,772,349 (GRCm39)	missense	possibly damaging	0.59
IGL02013:Zfp474	APN	18	52,771,971 (GRCm39)	missense	possibly damaging	0.86
PIT4469001:Zfp474	UTSW	18	52,771,791 (GRCm39)	missense	possibly damaging	0.77
PIT4618001:Zfp474	UTSW	18	52,771,476 (GRCm39)	missense	probably damaging	0.97
R1178:Zfp474	UTSW	18	52,771,814 (GRCm39)	nonsense	probably null
R1180:Zfp474	UTSW	18	52,771,814 (GRCm39)	nonsense	probably null
R1610:Zfp474	UTSW	18	52,771,437 (GRCm39)	missense	probably benign
R1819:Zfp474	UTSW	18	52,771,872 (GRCm39)	missense	probably damaging	1.00
R4854:Zfp474	UTSW	18	52,771,503 (GRCm39)	missense	possibly damaging	0.59
R6270:Zfp474	UTSW	18	52,771,436 (GRCm39)	missense	probably benign
R7574:Zfp474	UTSW	18	52,772,261 (GRCm39)	missense	probably benign	0.00
R8194:Zfp474	UTSW	18	52,772,229 (GRCm39)	missense	probably damaging	1.00
R8799:Zfp474	UTSW	18	52,772,166 (GRCm39)	missense	probably benign	0.00
R9407:Zfp474	UTSW	18	52,771,502 (GRCm39)	missense	probably benign	0.37
R9652:Zfp474	UTSW	18	52,772,015 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCAAGTACTGGCAACATGTGGAAG -3'
(R):5'- TCATGAATGGCAAGTGACTGGGAC -3'

Sequencing Primer
(F):5'- CATGTGGAAGCCCAGGAC -3'
(R):5'- TTCTCGGCCACAAATATAGCATATC -3'

Posted On

2013-07-11