Mutagenetix > Incidental Mutation

Incidental Mutation 'R7109:Copb2'

551403

Institutional Source

Beutler Lab

Gene Symbol

Copb2

Ensembl Gene

ENSMUSG00000032458

Gene Name

COPI coat complex subunit beta 2

Synonyms

MMRRC Submission

045201-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7109 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

98445784-98470428 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to A at 98463333 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035033 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035033]

AlphaFold

O55029

Predicted Effect

probably null
Transcript: ENSMUST00000035033

SMART Domains

Protein: ENSMUSP00000035033
Gene: ENSMUSG00000032458

Domain	Start	End	E-Value	Type
WD40	4	43	1.18e-1	SMART
WD40	46	85	3.9e-2	SMART
WD40	88	127	4.05e-9	SMART
WD40	131	171	1.51e-8	SMART
WD40	174	215	7.97e-8	SMART
WD40	218	257	5.9e-11	SMART
Pfam:Coatomer_WDAD	319	763	3.2e-176	PFAM
low complexity region	876	892	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Golgi coatomer complex (see MIM 601924) constitutes the coat of nonclathrin-coated vesicles and is essential for Golgi budding and vesicular trafficking. It consists of 7 protein subunits, including COPB2.[supplied by OMIM, Jul 2002]
PHENOTYPE: Mice homozygous for a null mutation display early embryonic lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921509C19Rik	T	G	2: 151,315,673 (GRCm39)	K2Q	probably damaging	Het
Abtb2	T	C	2: 103,545,860 (GRCm39)	Y903H	probably benign	Het
Adamtsl3	C	T	7: 82,261,069 (GRCm39)	P29S		Het
Alcam	T	A	16: 52,097,192 (GRCm39)	T355S	probably damaging	Het
Anapc1	A	G	2: 128,516,522 (GRCm39)	V404A	probably benign	Het
Bst2	A	G	8: 71,989,926 (GRCm39)	F49S	possibly damaging	Het
C1qtnf9	G	C	14: 61,017,019 (GRCm39)	W183S	probably benign	Het
Camsap3	A	G	8: 3,648,087 (GRCm39)	I132V	possibly damaging	Het
Cchcr1	T	A	17: 35,828,838 (GRCm39)		probably null	Het
Cenpk	A	G	13: 104,367,256 (GRCm39)	K31E	probably benign	Het
Cfap221	T	C	1: 119,853,301 (GRCm39)	K798E	possibly damaging	Het
Dennd1a	T	A	2: 37,938,804 (GRCm39)	Y102F	probably damaging	Het
Eif2ak4	C	T	2: 118,235,532 (GRCm39)	P88S	probably damaging	Het
Epha6	C	A	16: 59,503,031 (GRCm39)	V959F	probably damaging	Het
Fam193a	C	A	5: 34,623,165 (GRCm39)	T1251K	possibly damaging	Het
Herc1	A	T	9: 66,389,171 (GRCm39)	Q3896L	probably benign	Het
Ikbip	C	A	10: 90,919,090 (GRCm39)	D34E	probably benign	Het
Insr	A	G	8: 3,308,481 (GRCm39)	V185A	probably benign	Het
Jakmip1	C	T	5: 37,332,109 (GRCm39)	Q930*	probably null	Het
Klc1	A	G	12: 111,743,299 (GRCm39)	I209V	probably benign	Het
Lrrk2	T	A	15: 91,648,985 (GRCm39)	L1660M	probably damaging	Het
Mbd3l1	G	T	9: 18,396,210 (GRCm39)	D112Y	possibly damaging	Het
Mrps2	T	A	2: 28,358,258 (GRCm39)	V16E	probably benign	Het
Ncoa1	G	A	12: 4,372,978 (GRCm39)	T141I	possibly damaging	Het
Ndst2	G	T	14: 20,779,911 (GRCm39)	R110S	probably damaging	Het
Nlrp2	A	G	7: 5,331,616 (GRCm39)	V260A	probably damaging	Het
Or4d10	A	G	19: 12,051,576 (GRCm39)	I140T	probably benign	Het
Or51a6	A	T	7: 102,604,460 (GRCm39)	V116E	probably damaging	Het
Or5p1	A	G	7: 107,916,959 (GRCm39)	N286S	probably damaging	Het
Or7g16	A	T	9: 18,726,904 (GRCm39)	S229T	probably benign	Het
Pah	T	C	10: 87,406,148 (GRCm39)	V262A	probably damaging	Het
Pcnt	T	G	10: 76,205,738 (GRCm39)	E2538A	probably damaging	Het
Pdxk	T	A	10: 78,282,810 (GRCm39)	I162F	probably damaging	Het
Plod2	T	C	9: 92,455,650 (GRCm39)	F110L	probably damaging	Het
Pm20d2	A	T	4: 33,187,186 (GRCm39)	L154Q	probably damaging	Het
Podxl2	C	T	6: 88,820,566 (GRCm39)	V445I	possibly damaging	Het
Ppp1r3a	A	T	6: 14,719,235 (GRCm39)	W560R	probably benign	Het
Rasal3	A	G	17: 32,611,683 (GRCm39)	S815P	probably damaging	Het
Rdm1	A	G	11: 101,524,654 (GRCm39)	K196E	probably damaging	Het
Rsf1	CG	CGACGGCGGGG	7: 97,229,115 (GRCm39)		probably benign	Het
Scn1a	T	C	2: 66,181,286 (GRCm39)	D79G	possibly damaging	Het
Slc22a21	A	G	11: 53,870,329 (GRCm39)	Y119H	possibly damaging	Het
Stip1	C	T	19: 6,999,178 (GRCm39)	G467S	possibly damaging	Het
Synrg	C	A	11: 83,930,498 (GRCm39)	A1280E	possibly damaging	Het
Szt2	A	G	4: 118,232,676 (GRCm39)	C2396R	unknown	Het
Trappc3	A	G	4: 126,167,726 (GRCm39)	N95S	probably benign	Het
Tulp4	C	T	17: 6,282,055 (GRCm39)	H695Y	probably damaging	Het
Ush2a	T	A	1: 188,113,681 (GRCm39)	D633E	probably benign	Het
Wasl	G	A	6: 24,633,186 (GRCm39)	P151S	probably benign	Het
Wwp2	A	G	8: 108,209,988 (GRCm39)	N122S	probably benign	Het
Zfp51	A	G	17: 21,683,831 (GRCm39)	R149G	possibly damaging	Het
Zfp764	A	G	7: 127,003,887 (GRCm39)	S415P	possibly damaging	Het

Other mutations in Copb2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00093:Copb2	APN	9	98,450,130 (GRCm39)	missense	probably benign	0.00
IGL00496:Copb2	APN	9	98,452,371 (GRCm39)	missense	probably benign	0.00
IGL00518:Copb2	APN	9	98,464,947 (GRCm39)	missense	possibly damaging	0.95
IGL00642:Copb2	APN	9	98,461,086 (GRCm39)	missense	probably damaging	1.00
IGL00793:Copb2	APN	9	98,467,057 (GRCm39)	missense	probably benign
IGL00806:Copb2	APN	9	98,452,717 (GRCm39)	missense	probably damaging	0.97
IGL01599:Copb2	APN	9	98,463,203 (GRCm39)	missense	probably damaging	0.98
IGL01906:Copb2	APN	9	98,462,383 (GRCm39)	missense	probably benign	0.10
IGL02129:Copb2	APN	9	98,467,976 (GRCm39)	unclassified	probably benign
IGL02138:Copb2	APN	9	98,469,605 (GRCm39)	missense	probably benign
IGL03033:Copb2	APN	9	98,452,426 (GRCm39)	missense	probably benign	0.10
R0646:Copb2	UTSW	9	98,445,528 (GRCm39)	unclassified	probably benign
R0709:Copb2	UTSW	9	98,445,220 (GRCm39)	unclassified	probably benign
R1631:Copb2	UTSW	9	98,462,213 (GRCm39)	missense	probably benign	0.00
R2510:Copb2	UTSW	9	98,453,701 (GRCm39)	splice site	probably benign
R4862:Copb2	UTSW	9	98,463,320 (GRCm39)	missense	probably damaging	1.00
R5322:Copb2	UTSW	9	98,468,029 (GRCm39)	missense	probably benign	0.03
R5593:Copb2	UTSW	9	98,469,091 (GRCm39)	critical splice acceptor site	probably null
R5745:Copb2	UTSW	9	98,456,164 (GRCm39)	missense	probably damaging	0.99
R5859:Copb2	UTSW	9	98,450,161 (GRCm39)	missense	probably benign	0.17
R5990:Copb2	UTSW	9	98,452,378 (GRCm39)	missense	probably damaging	1.00
R7124:Copb2	UTSW	9	98,459,106 (GRCm39)	missense	probably damaging	0.98
R7211:Copb2	UTSW	9	98,456,198 (GRCm39)	missense	probably damaging	1.00
R7829:Copb2	UTSW	9	98,470,147 (GRCm39)	missense	probably damaging	0.99
R7960:Copb2	UTSW	9	98,462,407 (GRCm39)	missense	possibly damaging	0.65
R8311:Copb2	UTSW	9	98,450,072 (GRCm39)	missense	possibly damaging	0.78
R8537:Copb2	UTSW	9	98,469,672 (GRCm39)	missense	probably null	0.00
R8982:Copb2	UTSW	9	98,456,164 (GRCm39)	missense	probably damaging	0.99
R9539:Copb2	UTSW	9	98,467,983 (GRCm39)	critical splice acceptor site	probably null
R9762:Copb2	UTSW	9	98,464,901 (GRCm39)	missense	probably benign	0.38
R9800:Copb2	UTSW	9	98,461,081 (GRCm39)	missense	probably damaging	0.99
Z1176:Copb2	UTSW	9	98,468,199 (GRCm39)	missense	probably benign	0.16

Predicted Primers

PCR Primer
(F):5'- GCTCAGAAAGGTGGTCAGTCA -3'
(R):5'- TTTCTAAAAGTCAGGGCACATATTTA -3'

Sequencing Primer
(F):5'- CTCAGAAAGGTGGTCAGTCATCTGTC -3'
(R):5'- GCCTCTGGATCAAGATGTAGATCTC -3'

Posted On

2019-05-15