Mutagenetix > Incidental Mutation

Incidental Mutation 'R7116:Pphln1'

551799

Institutional Source

Beutler Lab

Gene Symbol

Pphln1

Ensembl Gene

ENSMUSG00000036167

Gene Name

periphilin 1

Synonyms

1110063K05Rik, CR, 1600022A19Rik

MMRRC Submission

045207-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7116 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

93296231-93389391 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 93353406 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 229 (S229T)

Ref Sequence

ENSEMBL: ENSMUSP00000042762 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049122] [ENSMUST00000068457] [ENSMUST00000109256] [ENSMUST00000165935] [ENSMUST00000229071]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000049122
AA Change: S229T

PolyPhen 2 Score 0.102 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000042762
Gene: ENSMUSG00000036167
AA Change: S229T

Domain	Start	End	E-Value	Type
low complexity region	35	59	N/A	INTRINSIC
low complexity region	154	174	N/A	INTRINSIC
low complexity region	215	231	N/A	INTRINSIC
Pfam:Lge1	275	365	2.4e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000068457
AA Change: S160T

PolyPhen 2 Score 0.050 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000068165
Gene: ENSMUSG00000036167
AA Change: S160T

Domain	Start	End	E-Value	Type
low complexity region	85	105	N/A	INTRINSIC
low complexity region	146	162	N/A	INTRINSIC
Pfam:Lge1	179	297	8.6e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000109256
AA Change: S141T

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000104879
Gene: ENSMUSG00000036167
AA Change: S141T

Domain	Start	End	E-Value	Type
low complexity region	85	105	N/A	INTRINSIC
low complexity region	127	143	N/A	INTRINSIC
Pfam:Lge1	160	278	7.1e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165935
AA Change: S141T

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000131121
Gene: ENSMUSG00000036167
AA Change: S141T

Domain	Start	End	E-Value	Type
low complexity region	85	105	N/A	INTRINSIC
low complexity region	127	143	N/A	INTRINSIC
Pfam:Lge1	160	278	7.1e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000229071
AA Change: S141T

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is one of the several proteins that become sequentially incorporated into the cornified cell envelope during the terminal differentiation of keratinocyte at the outer layers of epidermis. This protein interacts with periplakin, which is known as a precursor of the cornified cell envelope. The cellular localization pattern and insolubility of this protein suggest that it may play a role in epithelial differentiation and contribute to epidermal integrity and barrier formation. Multiple alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trap allele die prior to E7.5. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actn1	A	G	12: 80,251,751 (GRCm39)	S109P	probably damaging	Het
Afg3l1	T	G	8: 124,216,601 (GRCm39)	L280R	probably damaging	Het
Akap13	T	A	7: 75,369,943 (GRCm39)	S129T	probably benign	Het
Ankrd11	A	G	8: 123,622,869 (GRCm39)	S328P	probably damaging	Het
Aox3	A	T	1: 58,192,689 (GRCm39)	E554D	probably benign	Het
Bcl11a	T	C	11: 24,113,839 (GRCm39)	V394A	probably damaging	Het
Cass4	A	G	2: 172,269,889 (GRCm39)	Y657C	unknown	Het
Ccdc88a	C	T	11: 29,454,051 (GRCm39)	A1738V	probably benign	Het
Cfap74	T	C	4: 155,539,518 (GRCm39)	F948L	unknown	Het
Chgb	A	T	2: 132,623,237 (GRCm39)		probably benign	Het
Coro1c	C	T	5: 113,990,267 (GRCm39)	W138*	probably null	Het
Dgkb	A	G	12: 38,031,989 (GRCm39)	Q17R	probably benign	Het
Esco2	A	G	14: 66,064,006 (GRCm39)	Y393H	probably damaging	Het
Eya3	T	A	4: 132,422,110 (GRCm39)	D228E	probably benign	Het
Fat2	T	C	11: 55,173,162 (GRCm39)	D2517G	probably damaging	Het
Fry	T	A	5: 150,319,334 (GRCm39)		probably null	Het
Gal3st2b	A	T	1: 93,868,498 (GRCm39)	Q243L	possibly damaging	Het
Gimap9	C	T	6: 48,654,989 (GRCm39)	A192V	probably benign	Het
Glg1	T	A	8: 111,905,589 (GRCm39)	Q564L	probably benign	Het
H2-Aa	A	T	17: 34,502,601 (GRCm39)	Y188*	probably null	Het
Hira	T	C	16: 18,730,864 (GRCm39)	Y188H	probably damaging	Het
Ighv8-8	C	T	12: 115,257,814 (GRCm39)	D76N	probably benign	Het
Irf6	T	C	1: 192,849,905 (GRCm39)	F276L	probably damaging	Het
Itpr1	T	C	6: 108,458,229 (GRCm39)	C2000R	probably damaging	Het
Jakmip3	T	C	7: 138,621,979 (GRCm39)	V293A	possibly damaging	Het
Kcnh7	A	G	2: 62,707,614 (GRCm39)	V132A	probably benign	Het
Kcnj1	A	G	9: 32,308,277 (GRCm39)	T234A	possibly damaging	Het
Kpna3	T	A	14: 61,605,635 (GRCm39)	N470I	probably benign	Het
Lamb2	T	C	9: 108,364,522 (GRCm39)	F1121L	probably damaging	Het
Lingo1	T	C	9: 56,527,911 (GRCm39)	D232G	probably benign	Het
Lpxn	T	A	19: 12,788,622 (GRCm39)	N70K	probably benign	Het
Ltbp4	T	A	7: 27,004,852 (GRCm39)	H1657L	probably damaging	Het
Luzp2	C	A	7: 54,915,078 (GRCm39)	F334L	possibly damaging	Het
Mgat5b	A	T	11: 116,835,785 (GRCm39)	S142C	possibly damaging	Het
Mroh7	G	A	4: 106,568,517 (GRCm39)	T396I	probably benign	Het
Muc5b	T	C	7: 141,417,487 (GRCm39)	S3478P	probably benign	Het
Nfatc2	A	T	2: 168,349,269 (GRCm39)	M626K	probably benign	Het
Nlrp14	A	G	7: 106,782,255 (GRCm39)	D484G	possibly damaging	Het
Npc1	T	C	18: 12,344,601 (GRCm39)	Y423C	probably damaging	Het
Nrsn1	A	G	13: 25,437,388 (GRCm39)	I180T	probably damaging	Het
Or11g25	A	T	14: 50,723,025 (GRCm39)	I37F	probably benign	Het
Or51a8	T	A	7: 102,549,842 (GRCm39)	N89K	probably benign	Het
Osbpl6	A	T	2: 76,426,225 (GRCm39)	I935F	probably benign	Het
Otog	T	C	7: 45,947,689 (GRCm39)	F96L	probably damaging	Het
Pde1b	T	C	15: 103,436,745 (GRCm39)	L534P	possibly damaging	Het
Pdzd8	C	T	19: 59,288,125 (GRCm39)	E1092K	probably damaging	Het
Pfkl	T	C	10: 77,837,249 (GRCm39)	H108R	probably benign	Het
Pkhd1l1	G	A	15: 44,421,372 (GRCm39)	V3047I	probably benign	Het
Plag1	A	T	4: 3,904,812 (GRCm39)	C126*	probably null	Het
Pramel5	C	T	4: 144,000,451 (GRCm39)	D42N	possibly damaging	Het
Psd3	A	G	8: 68,166,390 (GRCm39)	V915A	probably benign	Het
Ptdss1	T	A	13: 67,093,391 (GRCm39)	I77N	probably benign	Het
Rsbn1	T	A	3: 103,821,892 (GRCm39)	C3*	probably null	Het
Shank1	C	T	7: 43,976,585 (GRCm39)	A561V	unknown	Het
Stip1	C	T	19: 6,999,178 (GRCm39)	G467S	possibly damaging	Het
Sv2c	A	T	13: 96,113,152 (GRCm39)	V599E	probably damaging	Het
Vmn2r37	T	C	7: 9,220,898 (GRCm39)	T322A	probably benign	Het
Vmn2r60	T	A	7: 41,786,487 (GRCm39)	M430K	probably benign	Het
Wipf3	T	A	6: 54,458,904 (GRCm39)		probably null	Het

Other mutations in Pphln1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00338:Pphln1	APN	15	93,363,091 (GRCm39)	missense	probably damaging	1.00
IGL01305:Pphln1	APN	15	93,386,985 (GRCm39)	missense	probably damaging	1.00
IGL01651:Pphln1	APN	15	93,386,864 (GRCm39)	missense	probably damaging	1.00
IGL03219:Pphln1	APN	15	93,363,136 (GRCm39)	splice site	probably benign
ANU22:Pphln1	UTSW	15	93,386,985 (GRCm39)	missense	probably damaging	1.00
R0294:Pphln1	UTSW	15	93,318,171 (GRCm39)	missense	probably damaging	1.00
R0309:Pphln1	UTSW	15	93,339,588 (GRCm39)	missense	possibly damaging	0.55
R0645:Pphln1	UTSW	15	93,318,192 (GRCm39)	missense	possibly damaging	0.80
R1208:Pphln1	UTSW	15	93,357,610 (GRCm39)	missense	probably damaging	1.00
R1208:Pphln1	UTSW	15	93,357,610 (GRCm39)	missense	probably damaging	1.00
R1879:Pphln1	UTSW	15	93,321,927 (GRCm39)	missense	probably damaging	0.99
R1936:Pphln1	UTSW	15	93,386,868 (GRCm39)	missense	possibly damaging	0.79
R4049:Pphln1	UTSW	15	93,362,987 (GRCm39)	missense	probably damaging	0.99
R5034:Pphln1	UTSW	15	93,350,010 (GRCm39)	missense	probably benign
R5472:Pphln1	UTSW	15	93,386,856 (GRCm39)	missense	possibly damaging	0.89
R5945:Pphln1	UTSW	15	93,353,413 (GRCm39)	critical splice donor site	probably null
R7989:Pphln1	UTSW	15	93,386,960 (GRCm39)	missense	possibly damaging	0.82
R8239:Pphln1	UTSW	15	93,386,930 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TGAAGAACACATCTAGCTCTCC -3'
(R):5'- CCCATTTGGTTATTGGAGAGGAGC -3'

Sequencing Primer
(F):5'- CCCATTAATTCAGCTACAGAATTAGG -3'
(R):5'- GCAAAGGCTACATAGAAACTTACAG -3'

Posted On

2019-05-15