Mutagenetix > Incidental Mutation

Incidental Mutation 'R7120:Csrnp3'

551909

Institutional Source

Beutler Lab

Gene Symbol

Csrnp3

Ensembl Gene

ENSMUSG00000044647

Gene Name

cysteine-serine-rich nuclear protein 3

Synonyms

mbu1, CSRNP-3, A330102K23Rik

MMRRC Submission

045209-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.210) question?

Stock #

R7120 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

65676111-65861890 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 65853354 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 594 (T594K)

Ref Sequence

ENSEMBL: ENSMUSP00000055719 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053910] [ENSMUST00000112394] [ENSMUST00000112397] [ENSMUST00000122912] [ENSMUST00000145598] [ENSMUST00000176109]

AlphaFold

P59055

Predicted Effect

probably damaging
Transcript: ENSMUST00000053910
AA Change: T594K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000055719
Gene: ENSMUSG00000044647
AA Change: T594K

Domain	Start	End	E-Value	Type
low complexity region	31	52	N/A	INTRINSIC
low complexity region	123	140	N/A	INTRINSIC
low complexity region	161	176	N/A	INTRINSIC
Blast:CXC	221	268	3e-15	BLAST
low complexity region	342	359	N/A	INTRINSIC
low complexity region	377	400	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000112394
AA Change: T582K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000108013
Gene: ENSMUSG00000044647
AA Change: T582K

Domain	Start	End	E-Value	Type
low complexity region	19	40	N/A	INTRINSIC
low complexity region	111	128	N/A	INTRINSIC
low complexity region	149	164	N/A	INTRINSIC
Blast:CXC	209	256	3e-15	BLAST
low complexity region	330	347	N/A	INTRINSIC
low complexity region	365	388	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112397

SMART Domains

Protein: ENSMUSP00000135151
Gene: ENSMUSG00000044647

Domain	Start	End	E-Value	Type
low complexity region	31	52	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000122912
AA Change: T594K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000117533
Gene: ENSMUSG00000044647
AA Change: T594K

Domain	Start	End	E-Value	Type
low complexity region	31	52	N/A	INTRINSIC
Pfam:CSRNP_N	70	291	5e-107	PFAM
low complexity region	342	359	N/A	INTRINSIC
low complexity region	377	400	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000145598
AA Change: T582K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000135605
Gene: ENSMUSG00000044647
AA Change: T582K

Domain	Start	End	E-Value	Type
low complexity region	19	40	N/A	INTRINSIC
low complexity region	111	128	N/A	INTRINSIC
low complexity region	149	164	N/A	INTRINSIC
Blast:CXC	209	256	3e-15	BLAST
low complexity region	330	347	N/A	INTRINSIC
low complexity region	365	388	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000176109
AA Change: T582K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000135019
Gene: ENSMUSG00000044647
AA Change: T582K

Domain	Start	End	E-Value	Type
low complexity region	19	40	N/A	INTRINSIC
low complexity region	111	128	N/A	INTRINSIC
low complexity region	149	164	N/A	INTRINSIC
Blast:CXC	209	256	3e-15	BLAST
low complexity region	330	347	N/A	INTRINSIC
low complexity region	365	388	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal development, hematopoiesis and T cell function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810062G17Rik	A	T	3: 36,536,016 (GRCm39)	Q94L	unknown	Het
4933411K16Rik	C	T	19: 42,041,112 (GRCm39)	A81V	probably benign	Het
Actr3	A	C	1: 125,331,169 (GRCm39)	Y273*	probably null	Het
Aoc1	T	A	6: 48,883,531 (GRCm39)	I469N	probably damaging	Het
Arhgef28	A	T	13: 98,081,047 (GRCm39)	L1270Q	probably damaging	Het
Atp2c1	G	A	9: 105,297,385 (GRCm39)	Q780*	probably null	Het
Bbs10	T	C	10: 111,135,310 (GRCm39)	V141A	possibly damaging	Het
Bivm	A	T	1: 44,165,606 (GRCm39)	T19S	probably benign	Het
Cacna1h	T	G	17: 25,610,481 (GRCm39)	H675P	probably benign	Het
Cadps	T	A	14: 12,439,919 (GRCm38)	L1204F	probably damaging	Het
Cald1	T	C	6: 34,663,011 (GRCm39)		probably null	Het
Calr	A	G	8: 85,569,457 (GRCm39)	M357T	probably damaging	Het
Ccni	A	T	5: 93,331,190 (GRCm39)	Y260*	probably null	Het
Dek	A	T	13: 47,253,659 (GRCm39)	M152K	unknown	Het
Depdc1b	T	C	13: 108,498,781 (GRCm39)	W155R	probably benign	Het
Ehd1	A	G	19: 6,347,591 (GRCm39)	K315R	probably benign	Het
Epn3	C	A	11: 94,383,254 (GRCm39)	R323S	probably benign	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Fbxo10	T	A	4: 45,040,533 (GRCm39)	K891*	probably null	Het
Fras1	G	T	5: 96,900,819 (GRCm39)	G3013*	probably null	Het
Gbp2b	A	G	3: 142,312,507 (GRCm39)	T297A	probably benign	Het
Gbp7	T	C	3: 142,249,734 (GRCm39)	S402P	probably damaging	Het
Gclc	T	C	9: 77,694,032 (GRCm39)	Y329H	probably damaging	Het
Gfpt1	A	G	6: 87,064,375 (GRCm39)	H655R	probably benign	Het
Gm4787	C	A	12: 81,425,260 (GRCm39)	M299I	probably benign	Het
Grb7	C	A	11: 98,345,817 (GRCm39)	R532S	probably benign	Het
Hmcn1	A	T	1: 150,576,292 (GRCm39)	I2066N	probably damaging	Het
Hnrnpll	T	C	17: 80,341,486 (GRCm39)	T518A	probably benign	Het
Hps3	G	A	3: 20,065,705 (GRCm39)	R712W	probably damaging	Het
Hspd1	A	G	1: 55,118,388 (GRCm39)	V406A	probably benign	Het
Igkv2-112	T	C	6: 68,197,510 (GRCm39)	F61L	probably benign	Het
Iqcf5	G	A	9: 106,392,995 (GRCm39)	R84H	probably damaging	Het
Itgad	T	A	7: 127,773,146 (GRCm39)	M1K	probably null	Het
Kmt2d	A	G	15: 98,758,946 (GRCm39)	S1292P	unknown	Het
Macc1	C	A	12: 119,409,480 (GRCm39)	Q83K	possibly damaging	Het
Map3k4	G	T	17: 12,490,354 (GRCm39)	A359E	probably damaging	Het
Mfap3	T	A	11: 57,419,043 (GRCm39)	C68S	probably damaging	Het
Mipep	C	T	14: 61,112,696 (GRCm39)	R660C	possibly damaging	Het
Morc2b	A	T	17: 33,354,787 (GRCm39)	L995Q	probably damaging	Het
Mrc1	A	G	2: 14,313,508 (GRCm39)	N913S	probably damaging	Het
N4bp1	C	A	8: 87,587,495 (GRCm39)	C481F	probably benign	Het
Nae1	A	G	8: 105,252,910 (GRCm39)		probably null	Het
Nup214	T	A	2: 31,941,054 (GRCm39)	V29E	probably benign	Het
Or1e30	A	T	11: 73,677,940 (GRCm39)	M59L	probably damaging	Het
Or8c11	T	C	9: 38,289,945 (GRCm39)	L250P	probably damaging	Het
Orai1	A	G	5: 123,167,535 (GRCm39)	E236G	possibly damaging	Het
P2rx7	A	G	5: 122,819,357 (GRCm39)	Y593C	probably benign	Het
Pcbp2	A	G	15: 102,383,113 (GRCm39)	D77G	possibly damaging	Het
Pcdha8	G	A	18: 37,126,840 (GRCm39)	V441M	possibly damaging	Het
Peg10	CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG	CCACATCAGGATCCACATCAGGATGCACATCAG	6: 4,756,398 (GRCm39)		probably benign	Het
Plaa	A	G	4: 94,470,919 (GRCm39)	S406P	possibly damaging	Het
Plekhh1	C	A	12: 79,117,713 (GRCm39)	P903Q	probably benign	Het
Plekhh3	T	C	11: 101,059,064 (GRCm39)	E92G	probably damaging	Het
Ptpn9	T	C	9: 56,967,166 (GRCm39)	F463S	probably damaging	Het
Ptprn2	A	C	12: 116,835,676 (GRCm39)	E337A	probably benign	Het
Rubcn	C	T	16: 32,656,839 (GRCm39)	R527Q	probably damaging	Het
Samd3	C	T	10: 26,106,864 (GRCm39)	T73M	possibly damaging	Het
Sfxn4	T	A	19: 60,840,477 (GRCm39)	K173*	probably null	Het
Son	CATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCTCCATGGACTCCCAGATGTTAGCAAC	CATGGACTCCCAGATGTTAGCAACTAGCTCTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCAGTATGGACTCCCAGATGTTAGCAACCAGCTCCATGGACTCCCAGATGTTAGCAAC	16: 91,453,579 (GRCm39)		probably benign	Het
Son	T	G	16: 91,467,414 (GRCm39)	N2258K	unknown	Het
Sspo	A	T	6: 48,442,505 (GRCm39)	H2000L	probably benign	Het
Syne1	C	T	10: 5,243,971 (GRCm39)	S2731N	probably benign	Het
Syt6	T	C	3: 103,494,673 (GRCm39)	Y213H	probably damaging	Het
Tkt	A	G	14: 30,281,779 (GRCm39)	N99S	probably benign	Het
Tlcd3b	T	C	7: 126,428,505 (GRCm39)	L221P	probably damaging	Het
Tmem258	G	A	19: 10,181,602 (GRCm39)		probably benign	Het
Tnks1bp1	T	C	2: 84,902,441 (GRCm39)	S1702P	probably damaging	Het
Tpte	A	G	8: 22,817,689 (GRCm39)	D225G	probably damaging	Het
Trak1	T	A	9: 121,289,564 (GRCm39)	F625L	probably benign	Het
Ttc33	G	T	15: 5,241,488 (GRCm39)	C77F	probably benign	Het
Ugt1a2	A	G	1: 88,128,522 (GRCm39)	H55R	probably damaging	Het
Vmn1r169	G	T	7: 23,277,444 (GRCm39)	V279L	probably benign	Het
Vmn2r25	T	C	6: 123,805,394 (GRCm39)	K488E	possibly damaging	Het
Vmn2r8	A	T	5: 108,956,504 (GRCm39)	D39E	possibly damaging	Het

Other mutations in Csrnp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01676:Csrnp3	APN	2	65,779,336 (GRCm39)	missense	probably damaging	0.99
IGL02427:Csrnp3	APN	2	65,708,380 (GRCm39)	utr 5 prime	probably benign
IGL02558:Csrnp3	APN	2	65,852,573 (GRCm39)	missense	probably damaging	1.00
IGL02605:Csrnp3	APN	2	65,853,153 (GRCm39)	missense	probably damaging	1.00
Uncle	UTSW	2	65,852,615 (GRCm39)	missense	probably benign	0.34
IGL02984:Csrnp3	UTSW	2	65,852,553 (GRCm39)	missense	probably benign	0.37
R0417:Csrnp3	UTSW	2	65,849,887 (GRCm39)	missense	probably benign	0.43
R0709:Csrnp3	UTSW	2	65,852,907 (GRCm39)	missense	probably damaging	0.99
R1340:Csrnp3	UTSW	2	65,832,740 (GRCm39)	missense	probably damaging	1.00
R1712:Csrnp3	UTSW	2	65,832,826 (GRCm39)	missense	probably damaging	1.00
R1960:Csrnp3	UTSW	2	65,853,363 (GRCm39)	missense	probably null	1.00
R1997:Csrnp3	UTSW	2	65,779,446 (GRCm39)	missense	probably damaging	1.00
R4839:Csrnp3	UTSW	2	65,852,375 (GRCm39)	nonsense	probably null
R5233:Csrnp3	UTSW	2	65,852,684 (GRCm39)	missense	possibly damaging	0.95
R5340:Csrnp3	UTSW	2	65,852,781 (GRCm39)	missense	probably benign	0.00
R6157:Csrnp3	UTSW	2	65,779,363 (GRCm39)	missense	probably damaging	1.00
R6781:Csrnp3	UTSW	2	65,852,615 (GRCm39)	missense	probably benign	0.34
R6974:Csrnp3	UTSW	2	65,779,408 (GRCm39)	missense	possibly damaging	0.59
R7293:Csrnp3	UTSW	2	65,779,344 (GRCm39)	missense	probably damaging	1.00
R8250:Csrnp3	UTSW	2	65,852,562 (GRCm39)	missense	probably damaging	0.99
R8478:Csrnp3	UTSW	2	65,708,400 (GRCm39)	splice site	probably null
R8899:Csrnp3	UTSW	2	65,852,987 (GRCm39)	missense	possibly damaging	0.71
R9396:Csrnp3	UTSW	2	65,832,841 (GRCm39)	missense	probably damaging	1.00
R9477:Csrnp3	UTSW	2	65,852,819 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGTAACCCCTTGTATCCTGAACAC -3'
(R):5'- AGCGACTGTATTTGTGCCACG -3'

Sequencing Primer
(F):5'- CAGGTCCAATCTTCCCCAAGTG -3'
(R):5'- GTATTTGTGCCACGCCACAG -3'

Posted On

2019-05-15