Mutagenetix > Incidental Mutation

Incidental Mutation 'R7122:Mgat4c'

552091

Institutional Source

Beutler Lab

Gene Symbol

Mgat4c

Ensembl Gene

ENSMUSG00000019888

Gene Name

MGAT4 family, member C

Synonyms

9130411I17Rik

MMRRC Submission

045245-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7122 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

101517348-102227330 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 102214070 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 18 (R18*)

Ref Sequence

ENSEMBL: ENSMUSP00000020039 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020039] [ENSMUST00000120748] [ENSMUST00000127504] [ENSMUST00000138016] [ENSMUST00000138522] [ENSMUST00000156751] [ENSMUST00000163753] [ENSMUST00000179929] [ENSMUST00000219195]

AlphaFold

Q9D306

Predicted Effect

probably null
Transcript: ENSMUST00000020039
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000020039
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC
Pfam:Glyco_transf_54	44	330	5.3e-112	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000120748
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000114010
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC
Pfam:Glyco_transf_54	44	330	5.3e-112	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000127504
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000117148
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000138016
AA Change: R18*

Predicted Effect

probably null
Transcript: ENSMUST00000138522
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000118056
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
low complexity region	26	38	N/A	INTRINSIC
Pfam:Glyco_transf_54	43	150	1.5e-22	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000156751
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000116216
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000163753
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000131551
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC
Pfam:Glyco_transf_54	44	330	5.3e-112	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000179929
AA Change: R18*

SMART Domains

Protein: ENSMUSP00000135959
Gene: ENSMUSG00000019888
AA Change: R18*

Domain	Start	End	E-Value	Type
transmembrane domain	26	43	N/A	INTRINSIC
Pfam:Glyco_transf_54	52	330	1.1e-96	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000219195
AA Change: R18*

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (75/76)

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akr1c20	T	A	13: 4,561,275 (GRCm39)	E126V	probably benign	Het
Alg3	A	T	16: 20,426,602 (GRCm39)	L213H	probably damaging	Het
Atp1a4	T	A	1: 172,059,503 (GRCm39)	Y863F	possibly damaging	Het
Atp6v0e	A	G	17: 26,914,390 (GRCm39)	T72A	probably benign	Het
Aup1	A	G	6: 83,032,123 (GRCm39)	T97A	probably benign	Het
Bcl6	T	C	16: 23,791,652 (GRCm39)	D234G	probably damaging	Het
Cdc42bpa	T	C	1: 179,892,583 (GRCm39)	L249P	probably damaging	Het
Celsr3	A	G	9: 108,705,766 (GRCm39)	K750E	possibly damaging	Het
Ces1g	C	A	8: 94,043,665 (GRCm39)	G425C	possibly damaging	Het
Chl1	T	C	6: 103,683,409 (GRCm39)	L745P	probably damaging	Het
Csmd2	G	A	4: 128,343,020 (GRCm39)	V1471M		Het
Dnah12	G	A	14: 26,500,869 (GRCm39)		probably null	Het
E4f1	G	A	17: 24,663,808 (GRCm39)	Q569*	probably null	Het
Efcab3	A	T	11: 104,899,787 (GRCm39)	I4350F	possibly damaging	Het
Fbxw24	A	T	9: 109,430,328 (GRCm39)	C439S	probably benign	Het
Ftdc2	C	A	16: 58,458,140 (GRCm39)	A54S	probably benign	Het
Gmip	C	T	8: 70,270,452 (GRCm39)	P721S	probably benign	Het
Grip1	A	G	10: 119,871,279 (GRCm39)	I669V	possibly damaging	Het
Gsn	A	T	2: 35,185,061 (GRCm39)	K339*	probably null	Het
Herc1	G	T	9: 66,307,056 (GRCm39)	A959S	possibly damaging	Het
Hic1	A	G	11: 75,060,056 (GRCm39)	V97A	probably benign	Het
Il11ra1	A	G	4: 41,766,189 (GRCm39)	Y242C	probably damaging	Het
Iqsec3	A	C	6: 121,450,317 (GRCm39)	V69G	unknown	Het
Jak3	T	A	8: 72,138,601 (GRCm39)	M933K	probably damaging	Het
Kbtbd7	G	A	14: 79,665,757 (GRCm39)	V530I	probably damaging	Het
Kif22	G	A	7: 126,632,150 (GRCm39)	R345C	probably benign	Het
Klhl7	G	A	5: 24,343,433 (GRCm39)	E250K	probably damaging	Het
Klk1b4	A	G	7: 43,860,531 (GRCm39)	H183R	probably damaging	Het
Lhfpl4	C	T	6: 113,153,632 (GRCm39)	V140I	probably benign	Het
Lhx5	T	A	5: 120,574,410 (GRCm39)	M238K	probably benign	Het
Lin28b	A	T	10: 45,345,244 (GRCm39)	H27Q	probably benign	Het
Myct1	C	A	10: 5,554,492 (GRCm39)	H120N	probably damaging	Het
Nek1	A	T	8: 61,559,829 (GRCm39)	D984V	probably benign	Het
Nfu1	A	T	6: 86,986,863 (GRCm39)		probably benign	Het
Nipsnap1	A	T	11: 4,833,366 (GRCm39)		probably null	Het
Nlrp9c	A	G	7: 26,085,046 (GRCm39)	Y178H	probably damaging	Het
Nrxn3	T	A	12: 89,477,377 (GRCm39)	M520K	probably damaging	Het
Oacyl	A	G	18: 65,853,323 (GRCm39)	D143G	probably benign	Het
Obox5	A	G	7: 15,492,732 (GRCm39)	Y229C	probably damaging	Het
Or1j12	A	G	2: 36,342,702 (GRCm39)	Y35C	probably damaging	Het
Or1j18	G	A	2: 36,624,436 (GRCm39)	M34I	probably benign	Het
Or2a5	T	C	6: 42,874,024 (GRCm39)	V213A	probably damaging	Het
Or52n5	T	C	7: 104,588,405 (GRCm39)	L224P	probably damaging	Het
Otogl	C	T	10: 107,702,515 (GRCm39)	A713T	probably benign	Het
Pcdhb17	A	C	18: 37,619,566 (GRCm39)	N452T	probably benign	Het
Pi16	A	G	17: 29,545,313 (GRCm39)	Y192C	probably damaging	Het
Pla2g5	T	C	4: 138,531,830 (GRCm39)	D58G	probably damaging	Het
Plpp4	G	T	7: 128,981,207 (GRCm39)	V153F	unknown	Het
Plxna2	C	A	1: 194,326,876 (GRCm39)	S270*	probably null	Het
Pole	T	A	5: 110,472,968 (GRCm39)		probably null	Het
Prmt7	T	C	8: 106,961,732 (GRCm39)	F215S	unknown	Het
Ptpn21	C	T	12: 98,655,171 (GRCm39)	V599I	probably damaging	Het
Rab26	C	A	17: 24,749,652 (GRCm39)	R131L	probably damaging	Het
Raph1	A	T	1: 60,565,136 (GRCm39)	V117D	probably benign	Het
Sacs	T	C	14: 61,447,845 (GRCm39)	V3297A	probably damaging	Het
Serpine1	C	A	5: 137,095,796 (GRCm39)	A262S	probably benign	Het
Sgf29	A	G	7: 126,271,221 (GRCm39)	D193G	probably null	Het
Sh3rf2	G	A	18: 42,237,227 (GRCm39)		probably null	Het
Sipa1l1	T	C	12: 82,469,236 (GRCm39)	V1245A	possibly damaging	Het
Slc22a7	A	G	17: 46,749,224 (GRCm39)	L31P	probably damaging	Het
Slc24a5	G	A	2: 124,930,111 (GRCm39)	V471I	probably benign	Het
Slc26a7	A	T	4: 14,533,639 (GRCm39)	Y395N	probably damaging	Het
Slc38a2	T	C	15: 96,591,182 (GRCm39)	M229V	probably damaging	Het
Sorbs1	G	C	19: 40,365,244 (GRCm39)	R180G	probably benign	Het
Susd1	G	A	4: 59,411,318 (GRCm39)	R225*	probably null	Het
Suz12	T	A	11: 79,884,419 (GRCm39)	F92I	probably damaging	Het
Tmem114	C	A	16: 8,242,610 (GRCm39)		probably benign	Het
Tmem68	A	G	4: 3,564,107 (GRCm39)	V159A	probably benign	Het
Tpra1	T	A	6: 88,885,276 (GRCm39)	I76N	probably damaging	Het
Trim45	A	G	3: 100,839,353 (GRCm39)	T752A	unknown	Het
Trp63	C	A	16: 25,639,227 (GRCm39)	H138Q	probably damaging	Het
Ugt2a2	T	C	5: 87,608,255 (GRCm39)	D528G	possibly damaging	Het
Vmn2r39	T	G	7: 9,017,761 (GRCm39)	K858N	possibly damaging	Het
Zfp629	A	T	7: 127,210,484 (GRCm39)	S442T	probably damaging	Het

Other mutations in Mgat4c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00235:Mgat4c	APN	10	102,224,581 (GRCm39)	missense	probably damaging	1.00
IGL01293:Mgat4c	APN	10	102,224,086 (GRCm39)	missense	probably benign	0.00
IGL01394:Mgat4c	APN	10	102,220,975 (GRCm39)	missense	possibly damaging	0.62
IGL01525:Mgat4c	APN	10	102,214,057 (GRCm39)	missense	probably damaging	0.97
IGL02023:Mgat4c	APN	10	102,214,045 (GRCm39)	nonsense	probably null
IGL02150:Mgat4c	APN	10	102,224,983 (GRCm39)	missense	probably benign	0.08
IGL02296:Mgat4c	APN	10	102,221,021 (GRCm39)	splice site	probably benign
IGL02946:Mgat4c	APN	10	102,225,114 (GRCm39)	missense	probably benign	0.14
IGL03062:Mgat4c	APN	10	102,224,322 (GRCm39)	missense	probably damaging	1.00
R0001:Mgat4c	UTSW	10	102,224,817 (GRCm39)	missense	probably benign	0.01
R0326:Mgat4c	UTSW	10	102,224,565 (GRCm39)	missense	probably damaging	1.00
R0480:Mgat4c	UTSW	10	102,224,980 (GRCm39)	missense	probably damaging	0.97
R0656:Mgat4c	UTSW	10	102,224,452 (GRCm39)	missense	probably damaging	1.00
R0746:Mgat4c	UTSW	10	102,224,548 (GRCm39)	missense	probably damaging	1.00
R1639:Mgat4c	UTSW	10	102,214,142 (GRCm39)	missense	probably damaging	1.00
R1989:Mgat4c	UTSW	10	102,214,020 (GRCm39)	start codon destroyed	probably null	0.66
R2148:Mgat4c	UTSW	10	102,224,790 (GRCm39)	missense	probably benign
R2437:Mgat4c	UTSW	10	102,224,436 (GRCm39)	missense	probably damaging	1.00
R2567:Mgat4c	UTSW	10	102,214,123 (GRCm39)	missense	probably benign	0.38
R3780:Mgat4c	UTSW	10	102,224,782 (GRCm39)	missense	probably benign	0.25
R3781:Mgat4c	UTSW	10	102,224,782 (GRCm39)	missense	probably benign	0.25
R3782:Mgat4c	UTSW	10	102,224,782 (GRCm39)	missense	probably benign	0.25
R3786:Mgat4c	UTSW	10	102,220,931 (GRCm39)	missense	probably damaging	1.00
R3806:Mgat4c	UTSW	10	102,224,221 (GRCm39)	missense	probably benign	0.10
R4596:Mgat4c	UTSW	10	102,224,422 (GRCm39)	missense	probably damaging	1.00
R4718:Mgat4c	UTSW	10	102,224,467 (GRCm39)	missense	probably damaging	1.00
R4740:Mgat4c	UTSW	10	102,224,265 (GRCm39)	missense	probably damaging	1.00
R4872:Mgat4c	UTSW	10	102,224,599 (GRCm39)	missense	probably damaging	1.00
R5305:Mgat4c	UTSW	10	102,225,140 (GRCm39)	missense	possibly damaging	0.82
R5740:Mgat4c	UTSW	10	102,225,182 (GRCm39)	missense	possibly damaging	0.49
R5841:Mgat4c	UTSW	10	102,224,826 (GRCm39)	missense	probably damaging	0.98
R6367:Mgat4c	UTSW	10	102,221,015 (GRCm39)	critical splice donor site	probably null
R6459:Mgat4c	UTSW	10	102,220,988 (GRCm39)	missense	probably damaging	1.00
R7021:Mgat4c	UTSW	10	102,224,289 (GRCm39)	missense	possibly damaging	0.82
R7146:Mgat4c	UTSW	10	102,224,357 (GRCm39)	missense	probably damaging	1.00
R7629:Mgat4c	UTSW	10	102,224,931 (GRCm39)	missense	probably benign	0.03
R7877:Mgat4c	UTSW	10	102,220,900 (GRCm39)	missense	probably benign	0.00
R8829:Mgat4c	UTSW	10	102,214,084 (GRCm39)	missense	probably damaging	1.00
R8872:Mgat4c	UTSW	10	102,224,146 (GRCm39)	missense	probably damaging	1.00
R9181:Mgat4c	UTSW	10	102,225,123 (GRCm39)	missense	probably benign	0.14
RF020:Mgat4c	UTSW	10	102,224,928 (GRCm39)	missense	probably benign
X0020:Mgat4c	UTSW	10	102,224,251 (GRCm39)	missense	possibly damaging	0.67
Z1177:Mgat4c	UTSW	10	102,224,463 (GRCm39)	missense	probably damaging	1.00
Z1177:Mgat4c	UTSW	10	102,224,311 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGCAGAAACTGGAAACACCTAG -3'
(R):5'- CTCCCTGCTATCTTAAGGTTGGG -3'

Sequencing Primer
(F):5'- CTTGATAAACGTCAACATTATGCATG -3'
(R):5'- CTATCTTAAGGTTGGGGTACAATTG -3'

Posted On

2019-05-15