Incidental Mutation 'R7128:Pakap'
ID 552447
Institutional Source Beutler Lab
Gene Symbol Pakap
Ensembl Gene ENSMUSG00000089945
Gene Name paralemmin A kinase anchor protein
Synonyms Palm2-Akap2, Akap2, AKAP-KL, Palm2Akap2, Gm20459, AF064781, B230340M18Rik, 53-H12, pEN70, Palm2
Accession Numbers
Essential gene? Probably non essential (E-score: 0.107) question?
Stock # R7128 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 57434475-57896984 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 57855816 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 382 (S382P)
Ref Sequence ENSEMBL: ENSMUSP00000099967 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000043456] [ENSMUST00000098064] [ENSMUST00000098066] [ENSMUST00000102902] [ENSMUST00000102903] [ENSMUST00000107598] [ENSMUST00000107600] [ENSMUST00000124581] [ENSMUST00000126465] [ENSMUST00000132497]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000043456
AA Change: S382P

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000048678
Gene: ENSMUSG00000038729
AA Change: S382P

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
low complexity region 213 227 N/A INTRINSIC
coiled coil region 256 314 N/A INTRINSIC
Pfam:AKAP2_C 568 885 2.5e-17 PFAM
Pfam:RII_binding_1 585 602 1.6e-5 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000098064
AA Change: S382P

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000095672
Gene: ENSMUSG00000038729
AA Change: S382P

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
low complexity region 213 227 N/A INTRINSIC
coiled coil region 256 314 N/A INTRINSIC
Pfam:AKAP2_C 569 872 4e-13 PFAM
Pfam:RII_binding_1 585 602 2.9e-5 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000098066
SMART Domains Protein: ENSMUSP00000095674
Gene: ENSMUSG00000089945

DomainStartEndE-ValueType
Pfam:Paralemmin 67 138 6.3e-23 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000102902
AA Change: S382P

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000099966
Gene: ENSMUSG00000038729
AA Change: S382P

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
low complexity region 213 227 N/A INTRINSIC
coiled coil region 256 314 N/A INTRINSIC
Pfam:RII_binding_1 585 602 3.5e-5 PFAM
coiled coil region 730 766 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000102903
AA Change: S382P

PolyPhen 2 Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000099967
Gene: ENSMUSG00000038729
AA Change: S382P

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
low complexity region 213 227 N/A INTRINSIC
coiled coil region 256 314 N/A INTRINSIC
Pfam:RII_binding_1 585 602 3.5e-5 PFAM
coiled coil region 730 766 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000107598
AA Change: S382P

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000103224
Gene: ENSMUSG00000038729
AA Change: S382P

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
low complexity region 213 227 N/A INTRINSIC
coiled coil region 256 314 N/A INTRINSIC
Pfam:AKAP2_C 569 872 4e-13 PFAM
Pfam:RII_binding_1 585 602 2.9e-5 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000107600
AA Change: S423P

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000103226
Gene: ENSMUSG00000038729
AA Change: S423P

DomainStartEndE-ValueType
low complexity region 193 204 N/A INTRINSIC
low complexity region 254 268 N/A INTRINSIC
coiled coil region 297 355 N/A INTRINSIC
Pfam:AKAP2_C 636 913 2.8e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000124581
SMART Domains Protein: ENSMUSP00000119742
Gene: ENSMUSG00000038729

DomainStartEndE-ValueType
low complexity region 152 163 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000126465
SMART Domains Protein: ENSMUSP00000130230
Gene: ENSMUSG00000089945

DomainStartEndE-ValueType
Pfam:Paralemmin 67 138 6.3e-23 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000132497
Predicted Effect
SMART Domains Protein: ENSMUSP00000117466
Gene: ENSMUSG00000089945
AA Change: S625P

DomainStartEndE-ValueType
low complexity region 15 28 N/A INTRINSIC
low complexity region 35 59 N/A INTRINSIC
Pfam:Paralemmin 115 269 6.5e-23 PFAM
low complexity region 396 407 N/A INTRINSIC
low complexity region 457 471 N/A INTRINSIC
coiled coil region 499 557 N/A INTRINSIC
Pfam:AKAP2_C 847 1129 1.9e-17 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
MGI Phenotype FUNCTION: This locus represents naturally occurring readthrough transcription between the neighboring Palm2 (paralemmin 2) and Akap2 (A kinase (PRKA) anchor protein 2) genes on chromosome 4. The readthrough transcript encodes a fusion protein that shares sequence identity with each individual gene product. Similar readthrough transcription has also been observed in human, as described in PMID: 11478809. [provided by RefSeq, Feb 2015]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgb T C 10: 10,347,985 (GRCm39) D25G probably benign Het
Ak9 T C 10: 41,300,713 (GRCm39) V1641A unknown Het
Akirin2 T C 4: 34,562,435 (GRCm39) I118T probably benign Het
Aldh1l1 G T 6: 90,540,361 (GRCm39) Q215H probably benign Het
Arhgef26 T C 3: 62,326,971 (GRCm39) F495L possibly damaging Het
Atg4a-ps T A 3: 103,553,063 (GRCm39) R93* probably null Het
Brd10 T C 19: 29,693,881 (GRCm39) T1871A possibly damaging Het
Catsper3 A G 13: 55,946,662 (GRCm39) I120V probably benign Het
Cavin2 A G 1: 51,328,579 (GRCm39) Q12R possibly damaging Het
Cenpf A T 1: 189,417,188 (GRCm39) F39Y probably damaging Het
Chfr T C 5: 110,291,502 (GRCm39) Y107H probably benign Het
Cmtm1 CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT CGGCACGTACTGAAGGTCGCTGACTGGATGGTGTGGCACGTACTGAAGGTCGCTGACTGGATGGT 8: 105,036,102 (GRCm39) probably benign Het
Defb4 T A 8: 19,251,220 (GRCm39) I29K possibly damaging Het
Dnah7c A G 1: 46,566,645 (GRCm39) T619A probably benign Het
Duxf1 T C 10: 58,059,479 (GRCm39) Q425R unknown Het
Emc3 A G 6: 113,494,881 (GRCm39) L179P probably damaging Het
Eno3 G C 11: 70,549,430 (GRCm39) V84L possibly damaging Het
Fam110a C T 2: 151,812,642 (GRCm39) V43M probably damaging Het
Fbxo30 T A 10: 11,165,860 (GRCm39) L194* probably null Het
Galnt14 T C 17: 73,852,096 (GRCm39) T108A probably benign Het
Glipr2 T C 4: 43,968,601 (GRCm39) I51T probably benign Het
Gm1527 C T 3: 28,969,460 (GRCm39) S270F possibly damaging Het
Gm3336 A G 8: 71,171,203 (GRCm39) M1V probably null Het
Gm4744 T C 6: 40,927,310 (GRCm39) D15G Het
Gm4924 G A 10: 82,214,533 (GRCm39) C777Y unknown Het
Gm5901 G A 7: 105,027,408 (GRCm39) G306S probably damaging Het
Gon4l T A 3: 88,802,999 (GRCm39) N1203K possibly damaging Het
Gpr161 A T 1: 165,138,026 (GRCm39) Y204F possibly damaging Het
Igsf10 T C 3: 59,236,326 (GRCm39) E1285G probably benign Het
Irx6 T C 8: 93,403,994 (GRCm39) L187P probably damaging Het
Itgb1bp1 A G 12: 21,322,089 (GRCm39) Y117H probably benign Het
Itln1 C A 1: 171,358,143 (GRCm39) D202Y possibly damaging Het
Kctd9 T C 14: 67,975,972 (GRCm39) S242P probably benign Het
Lrrk2 A G 15: 91,686,088 (GRCm39) H2143R probably benign Het
Lynx1 G A 15: 74,623,398 (GRCm39) R50* probably null Het
Lypd11 C T 7: 24,425,424 (GRCm39) probably null Het
Map10 A G 8: 126,398,592 (GRCm39) I662V probably benign Het
Mlxipl T C 5: 135,162,705 (GRCm39) L691P probably damaging Het
Muc16 A G 9: 18,554,300 (GRCm39) S3998P unknown Het
Nalcn A T 14: 123,831,914 (GRCm39) V120E probably damaging Het
Nfat5 T C 8: 108,085,323 (GRCm39) S539P probably benign Het
Olfml3 T C 3: 103,644,484 (GRCm39) M62V probably benign Het
Orm3 T C 4: 63,276,062 (GRCm39) V158A probably benign Het
Pced1b A T 15: 97,282,479 (GRCm39) K173* probably null Het
Pdzd7 T C 19: 45,016,388 (GRCm39) D911G probably damaging Het
Pkn3 A G 2: 29,973,327 (GRCm39) D383G probably damaging Het
Pm20d1 A G 1: 131,725,292 (GRCm39) E46G probably benign Het
Pyroxd2 A T 19: 42,719,842 (GRCm39) S455T probably benign Het
Rmnd5b T A 11: 51,515,364 (GRCm39) I301F possibly damaging Het
Rnf225 A G 7: 12,661,911 (GRCm39) N30S probably benign Het
Shisal2a G T 4: 108,225,100 (GRCm39) T154K probably benign Het
Slfn3 T A 11: 83,105,721 (GRCm39) C573S probably benign Het
Smc6 A G 12: 11,351,632 (GRCm39) E887G probably damaging Het
Sp140 A T 1: 85,547,846 (GRCm39) D191V possibly damaging Het
Srf C T 17: 46,866,372 (GRCm39) S128N possibly damaging Het
Sult6b1 T C 17: 79,202,070 (GRCm39) D144G probably damaging Het
Syne1 G A 10: 5,193,180 (GRCm39) A3956V probably damaging Het
Syt10 A T 15: 89,698,314 (GRCm39) D343E probably damaging Het
Tgtp2 G A 11: 48,950,135 (GRCm39) R146C possibly damaging Het
Tmcc3 A T 10: 94,266,496 (GRCm39) probably benign Het
Tnfrsf1a A T 6: 125,338,499 (GRCm39) T337S probably benign Het
Tns1 A T 1: 74,034,463 (GRCm39) I144N Het
Trim11 A G 11: 58,869,103 (GRCm39) E13G probably damaging Het
Trpm6 A T 19: 18,789,137 (GRCm39) H569L possibly damaging Het
Ttbk2 T A 2: 120,576,569 (GRCm39) I803L probably benign Het
Vmn1r21 G T 6: 57,820,936 (GRCm39) N169K probably damaging Het
Vmn2r60 C T 7: 41,844,536 (GRCm39) T633I probably damaging Het
Wt1 T C 2: 104,957,670 (GRCm39) Y177H probably benign Het
Other mutations in Pakap
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01123:Pakap APN 4 57,757,627 (GRCm39) nonsense probably null
IGL01371:Pakap APN 4 57,856,325 (GRCm39) missense probably benign 0.03
IGL01647:Pakap APN 4 57,688,477 (GRCm39) missense possibly damaging 0.82
IGL01733:Pakap APN 4 57,856,488 (GRCm39) missense probably benign 0.01
IGL02677:Pakap APN 4 57,856,263 (GRCm39) missense probably benign 0.01
IGL02696:Pakap APN 4 57,854,663 (GRCm39) missense probably damaging 0.97
IGL02736:Pakap APN 4 57,709,721 (GRCm39) missense probably damaging 0.96
IGL03067:Pakap APN 4 57,648,038 (GRCm39) missense probably benign 0.02
IGL03343:Pakap APN 4 57,688,502 (GRCm39) missense probably damaging 1.00
A9681:Pakap UTSW 4 57,855,358 (GRCm39) missense probably damaging 1.00
IGL02835:Pakap UTSW 4 57,883,044 (GRCm39) missense probably damaging 1.00
PIT4305001:Pakap UTSW 4 57,638,029 (GRCm39) missense possibly damaging 0.94
R0158:Pakap UTSW 4 57,709,649 (GRCm39) missense possibly damaging 0.96
R0244:Pakap UTSW 4 57,710,177 (GRCm39) missense possibly damaging 0.74
R0284:Pakap UTSW 4 57,855,207 (GRCm39) missense probably damaging 1.00
R0356:Pakap UTSW 4 57,855,628 (GRCm39) missense possibly damaging 0.48
R0594:Pakap UTSW 4 57,856,752 (GRCm39) missense probably benign 0.00
R0614:Pakap UTSW 4 57,856,720 (GRCm39) missense probably benign 0.41
R0617:Pakap UTSW 4 57,829,434 (GRCm39) intron probably benign
R0763:Pakap UTSW 4 57,688,441 (GRCm39) missense probably damaging 1.00
R0800:Pakap UTSW 4 57,709,650 (GRCm39) missense probably benign 0.06
R1228:Pakap UTSW 4 57,856,909 (GRCm39) missense probably damaging 1.00
R1861:Pakap UTSW 4 57,709,468 (GRCm39) missense probably damaging 0.97
R1895:Pakap UTSW 4 57,638,068 (GRCm39) missense probably benign 0.01
R1913:Pakap UTSW 4 57,892,963 (GRCm39) missense probably damaging 1.00
R2081:Pakap UTSW 4 57,855,927 (GRCm39) missense possibly damaging 0.49
R2128:Pakap UTSW 4 57,854,890 (GRCm39) missense probably benign 0.40
R2339:Pakap UTSW 4 57,883,180 (GRCm39) missense probably damaging 1.00
R4600:Pakap UTSW 4 57,709,954 (GRCm39) missense probably benign 0.26
R4667:Pakap UTSW 4 57,855,655 (GRCm39) missense possibly damaging 0.80
R4804:Pakap UTSW 4 57,854,688 (GRCm39) missense probably benign 0.05
R4989:Pakap UTSW 4 57,856,552 (GRCm39) missense probably benign
R5135:Pakap UTSW 4 57,855,912 (GRCm39) missense probably benign 0.00
R5292:Pakap UTSW 4 57,855,356 (GRCm39) missense probably damaging 0.98
R5420:Pakap UTSW 4 57,856,062 (GRCm39) missense probably benign 0.08
R5420:Pakap UTSW 4 57,856,434 (GRCm39) missense probably damaging 1.00
R5442:Pakap UTSW 4 57,637,876 (GRCm39) missense probably null
R5517:Pakap UTSW 4 57,855,987 (GRCm39) missense probably damaging 0.99
R5648:Pakap UTSW 4 57,854,848 (GRCm39) missense probably damaging 1.00
R5886:Pakap UTSW 4 57,856,295 (GRCm39) missense probably damaging 1.00
R5993:Pakap UTSW 4 57,855,273 (GRCm39) missense possibly damaging 0.86
R6133:Pakap UTSW 4 57,855,516 (GRCm39) nonsense probably null
R6189:Pakap UTSW 4 57,855,928 (GRCm39) missense probably benign 0.00
R6221:Pakap UTSW 4 57,855,618 (GRCm39) nonsense probably null
R6320:Pakap UTSW 4 57,710,173 (GRCm39) missense probably damaging 1.00
R6365:Pakap UTSW 4 57,709,675 (GRCm39) nonsense probably null
R6532:Pakap UTSW 4 57,855,174 (GRCm39) missense probably benign 0.00
R6760:Pakap UTSW 4 57,856,026 (GRCm39) missense probably damaging 1.00
R6792:Pakap UTSW 4 57,855,880 (GRCm39) missense possibly damaging 0.90
R6983:Pakap UTSW 4 57,709,973 (GRCm39) missense probably damaging 1.00
R7090:Pakap UTSW 4 57,648,042 (GRCm39) missense probably benign 0.00
R7269:Pakap UTSW 4 57,855,217 (GRCm39) missense probably damaging 1.00
R7726:Pakap UTSW 4 57,709,876 (GRCm39) missense probably damaging 1.00
R7744:Pakap UTSW 4 57,709,519 (GRCm39) missense probably damaging 0.97
R7837:Pakap UTSW 4 57,855,262 (GRCm39) missense probably damaging 1.00
R7940:Pakap UTSW 4 57,883,026 (GRCm39) missense probably damaging 0.98
R7946:Pakap UTSW 4 57,710,045 (GRCm39) missense probably damaging 1.00
R8094:Pakap UTSW 4 57,886,319 (GRCm39) missense possibly damaging 0.81
R8275:Pakap UTSW 4 57,886,329 (GRCm39) critical splice donor site probably null
R8702:Pakap UTSW 4 57,709,489 (GRCm39) nonsense probably null
R8836:Pakap UTSW 4 57,709,916 (GRCm39) missense probably benign 0.01
R9010:Pakap UTSW 4 57,883,192 (GRCm39) missense probably damaging 1.00
R9016:Pakap UTSW 4 57,637,857 (GRCm39) missense unknown
R9060:Pakap UTSW 4 57,855,412 (GRCm39) missense probably damaging 1.00
R9215:Pakap UTSW 4 57,709,595 (GRCm39) missense probably damaging 0.97
R9652:Pakap UTSW 4 57,710,125 (GRCm39) missense possibly damaging 0.51
X0065:Pakap UTSW 4 57,709,805 (GRCm39) missense probably benign
Z1177:Pakap UTSW 4 57,856,348 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACACCTAGATGGCATTGAACAC -3'
(R):5'- GGCACTTGTGAACTCTCCATC -3'

Sequencing Primer
(F):5'- CCTAGATGGCATTGAACACACAAAGG -3'
(R):5'- CTCTGCCCACAGTTTAGATAAGGG -3'
Posted On 2019-05-15