Incidental Mutation 'R7140:Wdr35'
ID 553416
Institutional Source Beutler Lab
Gene Symbol Wdr35
Ensembl Gene ENSMUSG00000066643
Gene Name WD repeat domain 35
Synonyms 4930459M12Rik
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7140 (G1)
Quality Score 225.009
Status Validated
Chromosome 12
Chromosomal Location 9023897-9078848 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 9072785 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Asparagine at position 920 (Y920N)
Ref Sequence ENSEMBL: ENSMUSP00000082895 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000085745] [ENSMUST00000111113]
AlphaFold Q8BND3
Predicted Effect probably damaging
Transcript: ENSMUST00000085745
AA Change: Y920N

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000082895
Gene: ENSMUSG00000066643
AA Change: Y920N

DomainStartEndE-ValueType
WD40 5 42 8.25e0 SMART
WD40 60 99 3.21e-1 SMART
WD40 104 143 2.21e1 SMART
WD40 147 184 1.06e2 SMART
Blast:WD40 246 289 6e-18 BLAST
Blast:WD40 292 330 2e-12 BLAST
Blast:WD40 465 530 4e-15 BLAST
Blast:WD40 533 571 1e-14 BLAST
low complexity region 1069 1078 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000111113
AA Change: Y909N

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000106742
Gene: ENSMUSG00000066643
AA Change: Y909N

DomainStartEndE-ValueType
WD40 5 42 8.25e0 SMART
WD40 60 99 3.21e-1 SMART
WD40 104 143 2.21e1 SMART
WD40 147 184 1.06e2 SMART
Blast:WD40 246 289 6e-18 BLAST
Blast:WD40 292 330 2e-12 BLAST
Blast:WD40 454 519 4e-15 BLAST
Blast:WD40 522 560 2e-14 BLAST
low complexity region 1058 1067 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.2%
Validation Efficiency 99% (70/71)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. Two patients with Sensenbrenner syndrome / cranioectodermal dysplasia (CED) were identified with mutations in this gene, consistent with a possible ciliary function.[provided by RefSeq, Sep 2010]
PHENOTYPE: Mice homozygous for an ENU induced mutation exhibit mid-gestation lethality, heart development defects, turning defects, polysyndactyly, hypoplastic lungs, tracheoesophageal fistula, herniated diaphragm and absent embryonic cilia. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 69 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgra2 T C 8: 27,610,929 (GRCm39) probably null Het
Ap2a2 G A 7: 141,178,777 (GRCm39) A148T probably benign Het
Arhgef3 A T 14: 27,123,664 (GRCm39) N442Y probably damaging Het
B3gat3 A G 19: 8,903,216 (GRCm39) Y191C probably damaging Het
B430306N03Rik A T 17: 48,629,483 (GRCm39) K203* probably null Het
C1qtnf6 T A 15: 78,409,283 (GRCm39) Y188F probably benign Het
Capn10 T C 1: 92,872,993 (GRCm39) V573A possibly damaging Het
Cbx4 T C 11: 118,972,754 (GRCm39) Y207C probably damaging Het
Ccdc43 G T 11: 102,579,695 (GRCm39) probably null Het
Ccng2 C A 5: 93,416,614 (GRCm39) P45Q probably benign Het
Cd86 T C 16: 36,441,263 (GRCm39) H68R probably benign Het
Cmtm4 A G 8: 105,081,827 (GRCm39) Y187H probably damaging Het
Cst11 T C 2: 148,610,649 (GRCm39) N134S probably benign Het
Cyp3a25 A T 5: 145,939,855 (GRCm39) F51I probably benign Het
Dnhd1 A G 7: 105,342,973 (GRCm39) E1439G probably benign Het
Dock4 T C 12: 40,686,158 (GRCm39) V131A probably benign Het
Dpysl2 A G 14: 67,099,982 (GRCm39) S85P probably benign Het
Dync1i2 A G 2: 71,078,283 (GRCm39) H324R probably benign Het
Elf1 A G 14: 79,804,710 (GRCm39) D162G probably benign Het
Eri3 G A 4: 117,506,604 (GRCm39) probably null Het
Fbxl21 T C 13: 56,680,145 (GRCm39) S203P probably damaging Het
Foxi1 G A 11: 34,155,758 (GRCm39) R291C probably damaging Het
Gprin3 C T 6: 59,332,128 (GRCm39) A60T possibly damaging Het
Hecw1 A G 13: 14,491,118 (GRCm39) C212R probably benign Het
Hivep3 T C 4: 119,954,318 (GRCm39) L878P probably damaging Het
Hs6st3 A T 14: 119,376,514 (GRCm39) N230Y probably damaging Het
Htr3b A G 9: 48,848,441 (GRCm39) V268A possibly damaging Het
Ip6k3 T C 17: 27,363,969 (GRCm39) T360A probably damaging Het
Izumo1 A G 7: 45,275,536 (GRCm39) T282A probably benign Het
Kidins220 T A 12: 25,086,623 (GRCm39) I1019N probably damaging Het
Med13l T C 5: 118,880,037 (GRCm39) V1043A probably benign Het
Mon2 C T 10: 122,871,358 (GRCm39) V420I probably benign Het
Naip6 T A 13: 100,436,708 (GRCm39) Y605F possibly damaging Het
Nek7 A G 1: 138,414,793 (GRCm39) I285T probably benign Het
Notch3 A G 17: 32,375,351 (GRCm39) V357A possibly damaging Het
Nrxn1 G A 17: 91,396,192 (GRCm39) probably benign Het
Nutm1 G A 2: 112,080,401 (GRCm39) R505C probably damaging Het
Or2w4 C T 13: 21,795,297 (GRCm39) V281M possibly damaging Het
Or4a67 G A 2: 88,598,308 (GRCm39) A117V probably damaging Het
Or5g9 T A 2: 85,551,818 (GRCm39) L23Q probably damaging Het
Or6c74 T G 10: 129,870,083 (GRCm39) M196R possibly damaging Het
Ostm1 C T 10: 42,559,268 (GRCm39) A176V probably null Het
Pabpc6 C A 17: 9,887,357 (GRCm39) S398I possibly damaging Het
Pcdhac2 C A 18: 37,277,239 (GRCm39) P73H possibly damaging Het
Pcdhga9 A G 18: 37,872,184 (GRCm39) D671G possibly damaging Het
Peg10 GC GCTCC 6: 4,756,452 (GRCm39) probably benign Het
Pigu A C 2: 155,143,160 (GRCm39) L248R possibly damaging Het
Pinx1 C A 14: 64,097,834 (GRCm39) probably null Het
Pon3 T C 6: 5,221,664 (GRCm39) N322S possibly damaging Het
Pramel23 T G 4: 143,425,002 (GRCm39) H147P probably benign Het
Rnft1 A G 11: 86,382,586 (GRCm39) I270V probably benign Het
Scgb2b11 A G 7: 31,910,006 (GRCm39) F27L probably damaging Het
Slc5a4b C T 10: 75,910,943 (GRCm39) V298I probably damaging Het
Slco1a6 T A 6: 142,048,745 (GRCm39) H345L probably benign Het
Sox1 C T 8: 12,447,405 (GRCm39) P349S possibly damaging Het
Spata31 A G 13: 65,068,913 (GRCm39) N354D probably benign Het
Speg T C 1: 75,383,414 (GRCm39) probably null Het
Stpg1 T C 4: 135,261,033 (GRCm39) I281T probably benign Het
Sult3a1 T C 10: 33,753,283 (GRCm39) L193P probably damaging Het
Tenm3 A T 8: 48,745,271 (GRCm39) C1097S probably damaging Het
Tfap2a A G 13: 40,883,523 (GRCm39) S7P probably benign Het
Tlr1 T C 5: 65,083,021 (GRCm39) I519V probably benign Het
Tmem238 A G 7: 4,792,072 (GRCm39) V157A possibly damaging Het
Tmem45b A T 9: 31,345,780 (GRCm39) probably null Het
Togaram2 A T 17: 72,021,761 (GRCm39) H742L probably benign Het
Trpc7 A T 13: 56,937,487 (GRCm39) Y656* probably null Het
Xab2 G A 8: 3,668,117 (GRCm39) R154C possibly damaging Het
Zfp759 A T 13: 67,288,177 (GRCm39) H576L possibly damaging Het
Zfp958 G T 8: 4,678,481 (GRCm39) A169S probably benign Het
Other mutations in Wdr35
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00236:Wdr35 APN 12 9,069,900 (GRCm39) missense probably benign
IGL00962:Wdr35 APN 12 9,071,726 (GRCm39) splice site probably benign
IGL01094:Wdr35 APN 12 9,055,838 (GRCm39) splice site probably benign
IGL01312:Wdr35 APN 12 9,058,655 (GRCm39) missense probably damaging 1.00
IGL01397:Wdr35 APN 12 9,058,550 (GRCm39) missense probably benign 0.04
IGL01490:Wdr35 APN 12 9,027,381 (GRCm39) missense probably damaging 0.98
IGL02153:Wdr35 APN 12 9,058,535 (GRCm39) missense probably null 0.04
IGL02319:Wdr35 APN 12 9,077,480 (GRCm39) unclassified probably benign
IGL02548:Wdr35 APN 12 9,074,297 (GRCm39) missense probably benign 0.00
IGL02941:Wdr35 APN 12 9,077,507 (GRCm39) missense probably damaging 0.98
IGL03038:Wdr35 APN 12 9,024,185 (GRCm39) splice site probably benign
IGL03086:Wdr35 APN 12 9,058,692 (GRCm39) splice site probably null
IGL03207:Wdr35 APN 12 9,039,936 (GRCm39) missense probably damaging 0.98
IGL03327:Wdr35 APN 12 9,028,694 (GRCm39) splice site probably benign
R0362:Wdr35 UTSW 12 9,045,625 (GRCm39) unclassified probably benign
R0464:Wdr35 UTSW 12 9,077,472 (GRCm39) unclassified probably benign
R0487:Wdr35 UTSW 12 9,062,743 (GRCm39) critical splice donor site probably null
R0976:Wdr35 UTSW 12 9,036,104 (GRCm39) missense probably benign 0.03
R1349:Wdr35 UTSW 12 9,069,870 (GRCm39) splice site probably benign
R1663:Wdr35 UTSW 12 9,070,000 (GRCm39) missense probably benign 0.00
R1769:Wdr35 UTSW 12 9,062,728 (GRCm39) missense probably damaging 1.00
R1779:Wdr35 UTSW 12 9,035,772 (GRCm39) missense possibly damaging 0.62
R1789:Wdr35 UTSW 12 9,027,435 (GRCm39) critical splice donor site probably null
R1893:Wdr35 UTSW 12 9,035,994 (GRCm39) missense probably benign
R2076:Wdr35 UTSW 12 9,074,281 (GRCm39) missense possibly damaging 0.88
R2228:Wdr35 UTSW 12 9,024,955 (GRCm39) missense possibly damaging 0.65
R2280:Wdr35 UTSW 12 9,028,628 (GRCm39) missense probably benign 0.01
R2281:Wdr35 UTSW 12 9,028,628 (GRCm39) missense probably benign 0.01
R2863:Wdr35 UTSW 12 9,078,060 (GRCm39) nonsense probably null
R3713:Wdr35 UTSW 12 9,077,648 (GRCm39) missense possibly damaging 0.68
R3911:Wdr35 UTSW 12 9,036,077 (GRCm39) missense probably benign
R3934:Wdr35 UTSW 12 9,058,014 (GRCm39) missense probably damaging 1.00
R4360:Wdr35 UTSW 12 9,024,149 (GRCm39) utr 5 prime probably benign
R4402:Wdr35 UTSW 12 9,039,981 (GRCm39) missense probably damaging 0.98
R4473:Wdr35 UTSW 12 9,065,995 (GRCm39) missense probably benign 0.00
R4656:Wdr35 UTSW 12 9,066,619 (GRCm39) missense probably benign 0.00
R4780:Wdr35 UTSW 12 9,068,150 (GRCm39) missense probably benign
R5092:Wdr35 UTSW 12 9,037,327 (GRCm39) missense probably damaging 1.00
R5160:Wdr35 UTSW 12 9,058,487 (GRCm39) missense probably damaging 0.99
R5184:Wdr35 UTSW 12 9,068,142 (GRCm39) missense probably damaging 1.00
R5346:Wdr35 UTSW 12 9,028,684 (GRCm39) missense probably benign 0.00
R5435:Wdr35 UTSW 12 9,039,951 (GRCm39) missense probably benign 0.01
R5472:Wdr35 UTSW 12 9,066,619 (GRCm39) missense probably benign 0.00
R5682:Wdr35 UTSW 12 9,031,125 (GRCm39) missense probably damaging 1.00
R5801:Wdr35 UTSW 12 9,056,723 (GRCm39) missense possibly damaging 0.92
R5990:Wdr35 UTSW 12 9,066,511 (GRCm39) missense probably damaging 1.00
R6196:Wdr35 UTSW 12 9,077,632 (GRCm39) missense probably benign 0.05
R6531:Wdr35 UTSW 12 9,028,685 (GRCm39) missense probably benign 0.00
R6746:Wdr35 UTSW 12 9,053,982 (GRCm39) splice site probably null
R6816:Wdr35 UTSW 12 9,077,724 (GRCm39) critical splice donor site probably null
R6863:Wdr35 UTSW 12 9,040,047 (GRCm39) missense probably damaging 0.97
R7088:Wdr35 UTSW 12 9,028,659 (GRCm39) missense probably benign 0.11
R7327:Wdr35 UTSW 12 9,037,312 (GRCm39) missense probably benign 0.10
R7403:Wdr35 UTSW 12 9,062,685 (GRCm39) missense probably damaging 0.98
R7422:Wdr35 UTSW 12 9,054,105 (GRCm39) missense probably benign 0.00
R7438:Wdr35 UTSW 12 9,072,785 (GRCm39) missense probably damaging 0.98
R7466:Wdr35 UTSW 12 9,055,773 (GRCm39) missense probably benign
R7491:Wdr35 UTSW 12 9,036,000 (GRCm39) missense probably benign 0.00
R7599:Wdr35 UTSW 12 9,074,886 (GRCm39) missense probably benign 0.01
R7620:Wdr35 UTSW 12 9,066,042 (GRCm39) missense probably benign 0.04
R7857:Wdr35 UTSW 12 9,058,113 (GRCm39) critical splice donor site probably null
R8289:Wdr35 UTSW 12 9,058,020 (GRCm39) missense probably benign 0.00
R8302:Wdr35 UTSW 12 9,078,110 (GRCm39) missense probably benign 0.09
R8433:Wdr35 UTSW 12 9,058,495 (GRCm39) missense probably damaging 1.00
R8479:Wdr35 UTSW 12 9,035,985 (GRCm39) missense probably benign 0.04
R8498:Wdr35 UTSW 12 9,058,626 (GRCm39) missense probably damaging 0.97
R8721:Wdr35 UTSW 12 9,075,044 (GRCm39) critical splice donor site probably null
R9220:Wdr35 UTSW 12 9,036,000 (GRCm39) missense possibly damaging 0.49
R9368:Wdr35 UTSW 12 9,071,826 (GRCm39) missense probably benign 0.00
R9573:Wdr35 UTSW 12 9,078,014 (GRCm39) missense probably benign 0.00
R9596:Wdr35 UTSW 12 9,036,092 (GRCm39) missense probably benign 0.08
R9773:Wdr35 UTSW 12 9,039,990 (GRCm39) missense probably benign 0.03
X0066:Wdr35 UTSW 12 9,040,029 (GRCm39) missense probably benign 0.04
Predicted Primers PCR Primer
(F):5'- TAGAGTGTCGACTGCTTTGC -3'
(R):5'- CGGTTTGGTACTGATTATGTACCAG -3'

Sequencing Primer
(F):5'- CGACTGCTTTGCTATATTGGAAG -3'
(R):5'- TGGCTATTCTAACTGGATAGAAGTTC -3'
Posted On 2019-05-15