Mutagenetix > Incidental Mutation

Incidental Mutation 'R7148:Emcn'

553928

Institutional Source

Beutler Lab

Gene Symbol

Emcn

Ensembl Gene

ENSMUSG00000054690

Gene Name

endomucin

Synonyms

0610012K22Rik

MMRRC Submission

045225-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7148 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

137046824-137136830 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 137122855 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 188 (Y188F)

Ref Sequence

ENSEMBL: ENSMUSP00000112603 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000119475] [ENSMUST00000122064] [ENSMUST00000197511]

AlphaFold

Q9R0H2

Predicted Effect

possibly damaging
Transcript: ENSMUST00000119475
AA Change: Y175F

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000114102
Gene: ENSMUSG00000054690
AA Change: Y175F

Domain	Start	End	E-Value	Type
Pfam:Endomucin	1	248	5.2e-135	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000122064
AA Change: Y188F

PolyPhen 2 Score 0.955 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000112603
Gene: ENSMUSG00000054690
AA Change: Y188F

Domain	Start	End	E-Value	Type
Pfam:Endomucin	1	261	4e-112	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000197511
AA Change: Y150F

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000142467
Gene: ENSMUSG00000054690
AA Change: Y150F

Domain	Start	End	E-Value	Type
Pfam:Endomucin	1	92	1.3e-38	PFAM
Pfam:Endomucin	89	219	4.8e-80	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] EMCN is a mucin-like sialoglycoprotein that interferes with the assembly of focal adhesion complexes and inhibits interaction between cells and the extracellular matrix (Kinoshita et al., 2001 [PubMed 11418125]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700024G13Rik	T	A	14: 32,110,269 (GRCm39)	Y14F	probably damaging	Het
Acly	A	G	11: 100,374,608 (GRCm39)	V805A	possibly damaging	Het
Apcdd1	T	C	18: 63,084,916 (GRCm39)	V371A	probably damaging	Het
Cacna1g	A	T	11: 94,356,756 (GRCm39)	F127I	probably benign	Het
Ccdc138	T	C	10: 58,374,102 (GRCm39)	L374P	probably damaging	Het
Ces2b	A	G	8: 105,564,928 (GRCm39)	Y504C	probably damaging	Het
Ces5a	C	T	8: 94,228,950 (GRCm39)	G427S	probably damaging	Het
Chd1l	C	T	3: 97,498,632 (GRCm39)	V256M	probably damaging	Het
Col24a1	C	T	3: 145,021,060 (GRCm39)	T477M	probably damaging	Het
Dmbt1	T	A	7: 130,668,464 (GRCm39)	C573*	probably null	Het
Eva1a	T	G	6: 82,048,125 (GRCm39)	M1R	probably null	Het
Fam243	T	C	16: 92,117,875 (GRCm39)	K138E	probably benign	Het
Fam83h	C	A	15: 75,877,016 (GRCm39)	D194Y	probably damaging	Het
Flywch1	T	C	17: 23,974,649 (GRCm39)	K664E	probably benign	Het
Fzd9	A	G	5: 135,278,544 (GRCm39)	V447A	probably benign	Het
Heatr5b	T	C	17: 79,138,863 (GRCm39)	D93G	probably damaging	Het
Hmcn1	T	C	1: 150,562,605 (GRCm39)	I2318V	probably benign	Het
Hyal5	T	A	6: 24,876,901 (GRCm39)	L258Q	probably damaging	Het
Itprid1	T	C	6: 55,874,671 (GRCm39)	I207T	probably damaging	Het
Kmo	T	A	1: 175,479,168 (GRCm39)	C235S	probably damaging	Het
Lamc2	G	A	1: 153,061,730 (GRCm39)	P2S	probably benign	Het
Lman2	G	A	13: 55,500,762 (GRCm39)	P146S	probably benign	Het
Mars2	T	C	1: 55,276,673 (GRCm39)	I92T	probably damaging	Het
Msh3	A	G	13: 92,491,330 (GRCm39)	F27L	probably benign	Het
Myom2	T	C	8: 15,134,577 (GRCm39)	V460A	possibly damaging	Het
Nicn1	T	A	9: 108,172,306 (GRCm39)	*214R	probably null	Het
Nsd2	T	C	5: 34,042,855 (GRCm39)	F1040L	possibly damaging	Het
Or1ab2	T	A	8: 72,864,001 (GRCm39)	I197N	possibly damaging	Het
Osm	T	A	11: 4,189,936 (GRCm39)	I240N	probably benign	Het
Pard3b	T	A	1: 62,479,191 (GRCm39)	D884E	probably benign	Het
Pex5	T	G	6: 124,382,231 (GRCm39)	D150A	probably benign	Het
Pfkfb4	T	C	9: 108,856,676 (GRCm39)	V394A	probably damaging	Het
Pjvk	A	G	2: 76,488,831 (GRCm39)	K334R	possibly damaging	Het
Pkd1l2	T	C	8: 117,807,525 (GRCm39)	D171G	probably benign	Het
Prpf4b	T	G	13: 35,078,455 (GRCm39)	N688K	probably benign	Het
R3hcc1	T	C	14: 69,943,001 (GRCm39)	E192G	possibly damaging	Het
Rad54l2	C	A	9: 106,596,318 (GRCm39)	G207*	probably null	Het
Rhobtb3	G	T	13: 76,059,006 (GRCm39)	T264K	probably benign	Het
Rpl27	A	G	11: 101,333,232 (GRCm39)		probably benign	Het
Rxfp3	C	T	15: 11,036,863 (GRCm39)	V170I	possibly damaging	Het
Samd4	T	A	14: 47,254,140 (GRCm39)	S201R	probably benign	Het
Sell	A	G	1: 163,893,176 (GRCm39)	I131V	possibly damaging	Het
Semp2l2a	T	A	8: 13,887,996 (GRCm39)	I32L	probably benign	Het
Sirpb1c	A	T	3: 15,887,223 (GRCm39)	Y205*	probably null	Het
Smc3	A	T	19: 53,630,326 (GRCm39)	E1111V	possibly damaging	Het
Sowaha	C	A	11: 53,370,182 (GRCm39)	V185L	probably benign	Het
Spata4	A	C	8: 55,055,585 (GRCm39)	I159L	probably benign	Het
Spring1	A	G	5: 118,393,759 (GRCm39)	N46D	probably benign	Het
Tekt2	A	G	4: 126,216,174 (GRCm39)	I373T	probably benign	Het
Tle7	G	T	8: 110,836,048 (GRCm39)	R119I	probably benign	Het
Tomm20l	T	C	12: 71,164,313 (GRCm39)	V65A	probably benign	Het
Trabd2b	A	G	4: 114,266,547 (GRCm39)	D187G	probably damaging	Het
Trrap	A	G	5: 144,758,613 (GRCm39)	I2147V	possibly damaging	Het
Tsc22d2	T	A	3: 58,324,429 (GRCm39)	C440*	probably null	Het
Ube3b	A	C	5: 114,544,313 (GRCm39)	N570T	probably damaging	Het
Uevld	A	G	7: 46,600,724 (GRCm39)	I70T	probably damaging	Het
Usp10	C	T	8: 120,663,289 (GRCm39)	T37I	possibly damaging	Het
Vmn2r23	T	A	6: 123,689,981 (GRCm39)	F286I	probably benign	Het
Vmn2r62	A	G	7: 42,414,640 (GRCm39)	V601A	probably benign	Het
Wdr81	G	C	11: 75,336,828 (GRCm39)	N401K		Het
Ythdc2	G	T	18: 44,966,189 (GRCm39)	V142F	probably benign	Het
Zfp346	T	C	13: 55,253,263 (GRCm39)	F36S	possibly damaging	Het
Zfp748	C	T	13: 67,690,358 (GRCm39)	V301M	possibly damaging	Het
Zim1	T	C	7: 6,681,220 (GRCm39)	K148E	possibly damaging	Het

Other mutations in Emcn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00817:Emcn	APN	3	137,085,638 (GRCm39)	missense	probably benign	0.11
IGL02250:Emcn	APN	3	137,124,747 (GRCm39)	splice site	probably benign
IGL03035:Emcn	APN	3	137,078,612 (GRCm39)	critical splice donor site	probably null
R0101:Emcn	UTSW	3	137,047,001 (GRCm39)	start codon destroyed	possibly damaging	0.51
R0180:Emcn	UTSW	3	137,124,755 (GRCm39)	critical splice acceptor site	probably null
R0329:Emcn	UTSW	3	137,122,575 (GRCm39)	splice site	probably benign
R0348:Emcn	UTSW	3	137,078,608 (GRCm39)	nonsense	probably null
R1475:Emcn	UTSW	3	137,085,668 (GRCm39)	missense	possibly damaging	0.92
R2224:Emcn	UTSW	3	137,109,778 (GRCm39)	missense	possibly damaging	0.93
R2226:Emcn	UTSW	3	137,109,778 (GRCm39)	missense	possibly damaging	0.93
R2227:Emcn	UTSW	3	137,109,778 (GRCm39)	missense	possibly damaging	0.93
R2471:Emcn	UTSW	3	137,109,772 (GRCm39)	missense	probably damaging	1.00
R4057:Emcn	UTSW	3	137,085,660 (GRCm39)	missense	probably damaging	0.98
R4456:Emcn	UTSW	3	137,085,608 (GRCm39)	nonsense	probably null
R4823:Emcn	UTSW	3	137,129,187 (GRCm39)	missense	probably damaging	1.00
R5043:Emcn	UTSW	3	137,097,362 (GRCm39)	missense	possibly damaging	0.95
R5326:Emcn	UTSW	3	137,085,638 (GRCm39)	missense	probably benign	0.11
R5542:Emcn	UTSW	3	137,085,638 (GRCm39)	missense	probably benign	0.11
R6925:Emcn	UTSW	3	137,124,763 (GRCm39)	missense	probably damaging	0.99
R7137:Emcn	UTSW	3	137,109,752 (GRCm39)	missense	probably damaging	0.98
R7265:Emcn	UTSW	3	137,124,837 (GRCm39)	missense	probably damaging	0.99
R7265:Emcn	UTSW	3	137,122,839 (GRCm39)	missense	probably damaging	0.97
R8243:Emcn	UTSW	3	137,097,411 (GRCm39)	missense	possibly damaging	0.92
R8436:Emcn	UTSW	3	137,129,228 (GRCm39)	missense	possibly damaging	0.95
R9009:Emcn	UTSW	3	137,124,775 (GRCm39)	missense	possibly damaging	0.92
R9214:Emcn	UTSW	3	137,047,029 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGTCACTGCTTCAAGGTATGATTTC -3'
(R):5'- TGGTGTGGTAACTAAGATCAGGC -3'

Sequencing Primer
(F):5'- TGAAACATACTCTTGCAGGGTG -3'
(R):5'- TGTGGTAACTAAGATCAGGCTTATG -3'

Posted On

2019-05-15