Incidental Mutation 'R7152:Supt5'
ID 554198
Institutional Source Beutler Lab
Gene Symbol Supt5
Ensembl Gene ENSMUSG00000003435
Gene Name suppressor of Ty 5, DSIF elongation factor subunit
Synonyms Spt5, Supt5h
MMRRC Submission 045254-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7152 (G1)
Quality Score 225.009
Status Validated
Chromosome 7
Chromosomal Location 28014316-28038171 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 28023325 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Threonine at position 318 (M318T)
Ref Sequence ENSEMBL: ENSMUSP00000003527 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000003527] [ENSMUST00000207563] [ENSMUST00000208243] [ENSMUST00000209141]
AlphaFold O55201
Predicted Effect probably benign
Transcript: ENSMUST00000003527
AA Change: M318T

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000003527
Gene: ENSMUSG00000003435
AA Change: M318T

DomainStartEndE-ValueType
low complexity region 2 29 N/A INTRINSIC
coiled coil region 36 63 N/A INTRINSIC
Pfam:Spt5_N 73 170 8.1e-17 PFAM
NGN 174 265 2.2e-14 SMART
KOW 270 297 8.77e0 SMART
KOW 417 444 8.69e-4 SMART
KOW 469 496 9.1e-7 SMART
KOW 591 618 2.46e-3 SMART
low complexity region 677 695 N/A INTRINSIC
KOW 697 724 3.93e-2 SMART
CTD 766 902 2.09e-31 SMART
KOW 1028 1055 9.69e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000207563
Predicted Effect probably benign
Transcript: ENSMUST00000208243
Predicted Effect probably benign
Transcript: ENSMUST00000209141
AA Change: M318T

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
Meta Mutation Damage Score 0.0630 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency 100% (53/53)
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Btnl10 A G 11: 58,813,223 (GRCm39) N284S probably benign Het
Casz1 C G 4: 148,985,748 (GRCm39) probably benign Het
Cdkn2c A T 4: 109,522,235 (GRCm39) F37I probably damaging Het
Cdyl2 T C 8: 117,351,066 (GRCm39) K22E probably damaging Het
Cers1 T C 8: 70,770,901 (GRCm39) W104R probably damaging Het
Cgrrf1 T A 14: 47,090,934 (GRCm39) Y223* probably null Het
Cited2 C A 10: 17,600,134 (GRCm39) N147K probably benign Het
Clip2 A T 5: 134,525,095 (GRCm39) L904Q probably damaging Het
Cntln T C 4: 84,802,937 (GRCm39) V79A possibly damaging Het
Cntnap1 C T 11: 101,068,152 (GRCm39) R55W probably damaging Het
Cspg4b T C 13: 113,455,384 (GRCm39) F477L Het
Ctnna2 T A 6: 76,957,807 (GRCm39) T481S possibly damaging Het
Ddx17 T C 15: 79,414,464 (GRCm39) T570A possibly damaging Het
Epha7 A G 4: 28,935,826 (GRCm39) K483E possibly damaging Het
Eps8l2 A T 7: 140,935,678 (GRCm39) I150F possibly damaging Het
Esyt1 A G 10: 128,351,629 (GRCm39) S827P possibly damaging Het
Fbxl13 T A 5: 21,787,065 (GRCm39) I291F possibly damaging Het
Foxd3 A C 4: 99,545,562 (GRCm39) H234P probably benign Het
Ggta1 T A 2: 35,292,711 (GRCm39) M199L probably benign Het
H3c13 A G 3: 96,176,254 (GRCm39) D82G probably benign Het
Ighv5-15 T C 12: 113,790,317 (GRCm39) E101G probably benign Het
Igkv8-18 T C 6: 70,333,205 (GRCm39) L49P probably damaging Het
Itpr1 T C 6: 108,371,368 (GRCm39) probably null Het
Klhl36 C T 8: 120,596,953 (GRCm39) T218M probably benign Het
Ltn1 A G 16: 87,224,529 (GRCm39) F65S probably damaging Het
Marchf3 A G 18: 56,909,053 (GRCm39) V244A probably benign Het
Myl10 G C 5: 136,726,825 (GRCm39) V70L probably benign Het
Ndst3 T A 3: 123,346,305 (GRCm39) I642F possibly damaging Het
Neb T C 2: 52,153,557 (GRCm39) D2456G probably damaging Het
Nphp1 A G 2: 127,595,899 (GRCm39) M522T probably benign Het
Or51k1 T A 7: 103,661,226 (GRCm39) M228L probably benign Het
Or8k33 C T 2: 86,383,673 (GRCm39) S265N probably benign Het
Pam T A 1: 97,813,465 (GRCm39) M322L probably damaging Het
Pcdhgb1 C A 18: 37,814,854 (GRCm39) H448Q probably benign Het
Pcnt T C 10: 76,247,194 (GRCm39) probably null Het
Pgm3 A T 9: 86,449,593 (GRCm39) D142E probably benign Het
Pomgnt2 C T 9: 121,812,589 (GRCm39) G64D probably damaging Het
Sds A T 5: 120,619,716 (GRCm39) probably null Het
Sirpb1b G T 3: 15,607,230 (GRCm39) Q351K probably benign Het
Slc2a12 T A 10: 22,541,453 (GRCm39) M436K probably benign Het
Slc9a5 G A 8: 106,095,025 (GRCm39) G872D probably benign Het
Stxbp2 T G 8: 3,682,583 (GRCm39) S57R probably benign Het
Sult2a6 T A 7: 13,956,445 (GRCm39) D272V probably benign Het
Tdpoz3 T C 3: 93,733,772 (GRCm39) V149A probably damaging Het
Tead2 T A 7: 44,869,871 (GRCm39) S124T possibly damaging Het
Tssc4 T A 7: 142,624,139 (GRCm39) V149D probably damaging Het
Ttn C T 2: 76,683,505 (GRCm39) A906T Het
Uspl1 A G 5: 149,124,588 (GRCm39) T2A possibly damaging Het
Vmn1r124 G A 7: 20,994,184 (GRCm39) P120L probably benign Het
Vmn1r37 T C 6: 66,708,883 (GRCm39) Y170H probably benign Het
Vnn3 T A 10: 23,727,513 (GRCm39) V11E possibly damaging Het
Zbtb7b C T 3: 89,288,209 (GRCm39) R203H probably benign Het
Zfhx3 T C 8: 109,674,839 (GRCm39) V1963A possibly damaging Het
Zfp324 C A 7: 12,700,198 (GRCm39) A19E probably benign Het
Zfyve26 T C 12: 79,325,888 (GRCm39) S784G probably benign Het
Other mutations in Supt5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00468:Supt5 APN 7 28,014,807 (GRCm39) missense probably benign 0.08
IGL01077:Supt5 APN 7 28,023,213 (GRCm39) nonsense probably null
IGL01477:Supt5 APN 7 28,016,689 (GRCm39) missense possibly damaging 0.94
IGL01813:Supt5 APN 7 28,023,400 (GRCm39) missense probably damaging 0.99
IGL02405:Supt5 APN 7 28,015,249 (GRCm39) missense probably benign 0.00
IGL02525:Supt5 APN 7 28,018,372 (GRCm39) splice site probably benign
IGL02584:Supt5 APN 7 28,025,592 (GRCm39) missense probably benign 0.08
IGL03387:Supt5 APN 7 28,019,508 (GRCm39) missense possibly damaging 0.89
R0420:Supt5 UTSW 7 28,016,754 (GRCm39) splice site probably benign
R0715:Supt5 UTSW 7 28,028,462 (GRCm39) missense probably damaging 1.00
R1226:Supt5 UTSW 7 28,028,172 (GRCm39) missense probably benign 0.03
R1655:Supt5 UTSW 7 28,029,449 (GRCm39) missense probably benign 0.00
R1801:Supt5 UTSW 7 28,016,639 (GRCm39) critical splice donor site probably null
R2424:Supt5 UTSW 7 28,014,590 (GRCm39) missense possibly damaging 0.47
R2883:Supt5 UTSW 7 28,028,745 (GRCm39) missense possibly damaging 0.75
R4280:Supt5 UTSW 7 28,016,498 (GRCm39) missense probably damaging 1.00
R4614:Supt5 UTSW 7 28,025,397 (GRCm39) missense possibly damaging 0.65
R4792:Supt5 UTSW 7 28,015,754 (GRCm39) missense probably benign 0.19
R4997:Supt5 UTSW 7 28,015,462 (GRCm39) missense probably benign 0.05
R5041:Supt5 UTSW 7 28,014,805 (GRCm39) missense probably damaging 1.00
R5062:Supt5 UTSW 7 28,028,440 (GRCm39) splice site probably null
R5119:Supt5 UTSW 7 28,015,795 (GRCm39) missense probably damaging 1.00
R5170:Supt5 UTSW 7 28,015,508 (GRCm39) missense probably benign 0.05
R5687:Supt5 UTSW 7 28,017,188 (GRCm39) missense probably benign 0.27
R5720:Supt5 UTSW 7 28,021,993 (GRCm39) missense probably damaging 0.97
R5935:Supt5 UTSW 7 28,028,900 (GRCm39) missense probably benign 0.09
R6032:Supt5 UTSW 7 28,015,600 (GRCm39) missense probably damaging 1.00
R6032:Supt5 UTSW 7 28,015,600 (GRCm39) missense probably damaging 1.00
R6049:Supt5 UTSW 7 28,014,622 (GRCm39) missense probably benign 0.32
R7043:Supt5 UTSW 7 28,019,435 (GRCm39) missense probably benign 0.00
R7085:Supt5 UTSW 7 28,030,914 (GRCm39) missense unknown
R7201:Supt5 UTSW 7 28,016,213 (GRCm39) missense probably benign 0.03
R7401:Supt5 UTSW 7 28,023,197 (GRCm39) missense probably damaging 0.99
R7959:Supt5 UTSW 7 28,015,224 (GRCm39) missense probably benign 0.43
R8181:Supt5 UTSW 7 28,030,899 (GRCm39) missense unknown
R8998:Supt5 UTSW 7 28,037,848 (GRCm39) missense unknown
R8999:Supt5 UTSW 7 28,037,848 (GRCm39) missense unknown
R9021:Supt5 UTSW 7 28,016,671 (GRCm39) missense probably damaging 0.98
R9314:Supt5 UTSW 7 28,019,799 (GRCm39) missense probably damaging 0.99
R9345:Supt5 UTSW 7 28,016,412 (GRCm39) missense probably benign 0.03
R9477:Supt5 UTSW 7 28,025,500 (GRCm39) missense probably damaging 0.99
R9568:Supt5 UTSW 7 28,014,688 (GRCm39) missense probably damaging 1.00
Z1177:Supt5 UTSW 7 28,016,456 (GRCm39) missense possibly damaging 0.90
Predicted Primers PCR Primer
(F):5'- TGTACCATCAAGCAAGAGCAGG -3'
(R):5'- TGGGAGTTGTAAGCAAGCCTG -3'

Sequencing Primer
(F):5'- TCTCCAGGTGCGCTCAC -3'
(R):5'- AGTTGTAAGCAAGCCTGTTTCTTC -3'
Posted On 2019-05-15