Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4283001:Zdhhc24'

554387

Institutional Source

Beutler Lab

Gene Symbol

Zdhhc24

Ensembl Gene

ENSMUSG00000006463

Gene Name

zinc finger, DHHC domain containing 24

Synonyms

5730496N17Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

PIT4283001 (G1)

Quality Score

85.0076

Status

Not validated

Chromosome

Chromosomal Location

4928696-4935425 bp(+) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

T to C at 4928778 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 1 (M1T)

Ref Sequence

ENSEMBL: ENSMUSP00000006632 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006626] [ENSMUST00000006632] [ENSMUST00000160014] [ENSMUST00000162720]

AlphaFold

Q6IR37

Predicted Effect

probably benign
Transcript: ENSMUST00000006626

SMART Domains

Protein: ENSMUSP00000006626
Gene: ENSMUSG00000006457

Domain	Start	End	E-Value	Type
low complexity region	8	30	N/A	INTRINSIC
CH	46	146	1.4e-23	SMART
CH	159	258	4.83e-27	SMART
low complexity region	261	272	N/A	INTRINSIC
Pfam:Spectrin	287	397	5.5e-15	PFAM
SPEC	410	511	3.78e-23	SMART
SPEC	525	632	2.37e-6	SMART
Pfam:Spectrin	643	746	4.1e-15	PFAM
EFh	763	791	7.93e-1	SMART
EFh	799	827	5.96e-1	SMART
efhand_Ca_insen	830	896	2.29e-34	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000006632
AA Change: M1T

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000006632
Gene: ENSMUSG00000006463
AA Change: M1T

Domain	Start	End	E-Value	Type
transmembrane domain	19	41	N/A	INTRINSIC
transmembrane domain	51	73	N/A	INTRINSIC
Pfam:zf-DHHC	91	234	4.3e-27	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000160014
AA Change: M1T

SMART Domains

Protein: ENSMUSP00000123709
Gene: ENSMUSG00000006463
AA Change: M1T

Domain	Start	End	E-Value	Type
transmembrane domain	19	41	N/A	INTRINSIC
transmembrane domain	51	73	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000162720
AA Change: M1T

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000124337
Gene: ENSMUSG00000006463
AA Change: M1T

Domain	Start	End	E-Value	Type
transmembrane domain	19	41	N/A	INTRINSIC
transmembrane domain	51	73	N/A	INTRINSIC

Coding Region Coverage

1x: 93.2%
3x: 91.1%
10x: 86.5%
20x: 76.2%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Phenotypic analysis of mice homozygous for a gene trap allele indicates this mutation has no notable phenotype in any parameter tested in a high-throughput screen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610028H24Rik	A	C	10: 76,285,093 (GRCm39)	M1L	probably benign	Het
Aacs	C	A	5: 125,561,719 (GRCm39)	A119D	probably damaging	Het
Abcb1b	T	A	5: 8,863,693 (GRCm39)	V216D	probably damaging	Het
Adap2	T	A	11: 80,068,089 (GRCm39)	L367H	probably damaging	Het
Adcy7	T	A	8: 89,042,120 (GRCm39)	M373K	probably damaging	Het
Arhgap31	A	G	16: 38,429,354 (GRCm39)	L507P	probably damaging	Het
Brinp3	C	T	1: 146,777,161 (GRCm39)	T536I	probably damaging	Het
Cacna1b	T	C	2: 24,521,953 (GRCm39)	D1718G	probably damaging	Het
Cacna2d1	A	C	5: 16,507,292 (GRCm39)	Y347S	probably benign	Het
Carf	C	A	1: 60,167,161 (GRCm39)	P165T	probably benign	Het
Cplx3	T	C	9: 57,523,359 (GRCm39)	E66G	probably damaging	Het
Dnaaf5	A	G	5: 139,151,917 (GRCm39)	T523A	probably benign	Het
Dnajc10	T	C	2: 80,161,739 (GRCm39)	S326P	probably benign	Het
Eif4enif1	A	T	11: 3,184,464 (GRCm39)	E528D	probably damaging	Het
Elp2	G	A	18: 24,755,187 (GRCm39)	D392N	probably damaging	Het
Fat1	T	C	8: 45,482,577 (GRCm39)	S3079P	probably damaging	Het
Fat1	G	T	8: 45,490,244 (GRCm39)	V3719F	probably damaging	Het
Fat3	T	A	9: 15,917,897 (GRCm39)	S1509C	possibly damaging	Het
Fcsk	A	G	8: 111,614,064 (GRCm39)	V693A	probably benign	Het
Frmpd4	C	T	X: 166,512,030 (GRCm39)	R8H	possibly damaging	Het
Glud1	T	A	14: 34,058,129 (GRCm39)	I380N	probably damaging	Het
Gnl2	A	G	4: 124,940,099 (GRCm39)	S324G	probably damaging	Het
Gramd1b	C	T	9: 40,366,752 (GRCm39)	G72D	probably benign	Het
Gramd2b	A	T	18: 56,622,735 (GRCm39)	E299V	probably damaging	Het
Grin1	C	T	2: 25,187,864 (GRCm39)	R544H	probably damaging	Het
Ifitm7	A	T	16: 13,801,471 (GRCm39)	V96E	probably damaging	Het
Lsm14b	T	A	2: 179,674,336 (GRCm39)	M293K	probably benign	Het
Marf1	T	A	16: 13,946,432 (GRCm39)	T1230S	probably benign	Het
Morc2b	T	A	17: 33,355,042 (GRCm39)	H910L	probably benign	Het
Mylip	A	G	13: 45,560,110 (GRCm39)	N247S	possibly damaging	Het
Nup50l	A	G	6: 96,142,696 (GRCm39)	I116T	probably benign	Het
Or4a73	T	C	2: 89,420,572 (GRCm39)	M296V	probably benign	Het
Osbpl3	T	C	6: 50,323,068 (GRCm39)	S264G	probably benign	Het
Pds5b	C	T	5: 150,701,774 (GRCm39)	R802W	probably damaging	Het
Pik3cg	T	C	12: 32,255,864 (GRCm39)	E41G	probably damaging	Het
Plk3	A	G	4: 116,990,489 (GRCm39)	I112T	probably damaging	Het
Pwp2	A	G	10: 78,020,921 (GRCm39)	M1T	probably null	Het
Rtel1	T	C	2: 180,988,683 (GRCm39)	I417T	probably benign	Het
Sirt1	A	T	10: 63,157,565 (GRCm39)	N616K	probably benign	Het
Sirt6	T	C	10: 81,458,252 (GRCm39)	S334G	possibly damaging	Het
Strc	T	C	2: 121,205,788 (GRCm39)	Y827C	probably damaging	Het
Taf1b	T	C	12: 24,597,594 (GRCm39)	Y385H	possibly damaging	Het
Tgm5	T	C	2: 120,902,066 (GRCm39)	E201G	possibly damaging	Het
Thbd	G	C	2: 148,249,003 (GRCm39)	N288K	probably benign	Het
Ush2a	T	A	1: 188,169,064 (GRCm39)	N1068K	probably benign	Het
Vmn2r52	T	C	7: 9,904,756 (GRCm39)	E361G	possibly damaging	Het
Vps13d	T	C	4: 144,835,158 (GRCm39)	N2736S		Het
Vwa5b1	A	G	4: 138,327,574 (GRCm39)	L334P	probably damaging	Het
Zan	A	G	5: 137,398,355 (GRCm39)	S4226P	unknown	Het

Other mutations in Zdhhc24

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01289:Zdhhc24	APN	19	4,928,850 (GRCm39)	missense	probably damaging	0.99
R0003:Zdhhc24	UTSW	19	4,930,402 (GRCm39)	missense	possibly damaging	0.51
R1720:Zdhhc24	UTSW	19	4,928,979 (GRCm39)	missense	probably damaging	0.99
R1780:Zdhhc24	UTSW	19	4,933,794 (GRCm39)	missense	probably damaging	0.99
R5530:Zdhhc24	UTSW	19	4,933,591 (GRCm39)	splice site	probably null
R5965:Zdhhc24	UTSW	19	4,933,778 (GRCm39)	missense	probably benign	0.00
R7249:Zdhhc24	UTSW	19	4,928,889 (GRCm39)	missense	possibly damaging	0.81

Predicted Primers

PCR Primer
(F):5'- CCAATCAGATTTTCGAACATCTGG -3'
(R):5'- ACGTTGCCCAGCAGATTGAG -3'

Sequencing Primer
(F):5'- CGAACATCTGGTCAGTTAGCC -3'
(R):5'- CCAGCAGATTGAGCAGCTG -3'

Posted On

2019-06-07