Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4305001:Urgcp'

554567

Institutional Source

Beutler Lab

Gene Symbol

Urgcp

Ensembl Gene

ENSMUSG00000049680

Gene Name

upregulator of cell proliferation

Synonyms

2010005J08Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.104) question?

Stock #

PIT4305001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

5663417-5712376 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 5667996 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 157 (Y157C)

Ref Sequence

ENSEMBL: ENSMUSP00000091053 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053427] [ENSMUST00000093362] [ENSMUST00000118076] [ENSMUST00000120306] [ENSMUST00000140922] [ENSMUST00000170116]

AlphaFold

Q5NCI0

Predicted Effect

probably damaging
Transcript: ENSMUST00000053427
AA Change: Y114C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000055821
Gene: ENSMUSG00000049680
AA Change: Y114C

Domain	Start	End	E-Value	Type
Blast:PGAM	1	709	N/A	BLAST
SCOP:d1h65a_	627	718	1e-3	SMART
coiled coil region	856	883	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000093362
AA Change: Y157C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000091053
Gene: ENSMUSG00000049680
AA Change: Y157C

Domain	Start	End	E-Value	Type
Blast:PGAM	15	752	N/A	BLAST
SCOP:d1h65a_	670	761	1e-3	SMART
coiled coil region	899	926	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000118076
AA Change: Y114C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000113589
Gene: ENSMUSG00000049680
AA Change: Y114C

Domain	Start	End	E-Value	Type
Blast:PGAM	1	709	N/A	BLAST
SCOP:d1h65a_	627	718	1e-3	SMART
coiled coil region	856	883	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000120306
AA Change: Y114C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000113060
Gene: ENSMUSG00000049680
AA Change: Y114C

Domain	Start	End	E-Value	Type
Blast:PGAM	1	709	N/A	BLAST
SCOP:d1h65a_	627	718	1e-3	SMART
coiled coil region	856	883	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000140922

SMART Domains

Protein: ENSMUSP00000120902
Gene: ENSMUSG00000049680

Domain	Start	End	E-Value	Type
Blast:PGAM	1	99	7e-43	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000170116
AA Change: Y114C

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000133216
Gene: ENSMUSG00000049680
AA Change: Y114C

Domain	Start	End	E-Value	Type
Blast:PGAM	1	709	N/A	BLAST
SCOP:d1h65a_	627	718	1e-3	SMART
coiled coil region	856	883	N/A	INTRINSIC

Coding Region Coverage

1x: 93.4%
3x: 91.3%
10x: 86.8%
20x: 76.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] URG4 is upregulated in the presence of hepatitis B virus (HBV)-encoded X antigen (HBxAg) and may contribute to the development of hepatocellular carcinoma by promoting hepatocellular growth and survival (Tufan et al., 2002 [PubMed 12082552]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts4	A	G	1: 171,086,610 (GRCm39)	N801D	probably benign	Het
Adcy2	T	C	13: 68,826,721 (GRCm39)	K661R	probably benign	Het
Akap1	A	T	11: 88,735,204 (GRCm39)	M486K	probably benign	Het
Arhgap40	T	A	2: 158,373,825 (GRCm39)	I202N	probably benign	Het
C1qtnf2	T	A	11: 43,382,022 (GRCm39)	L248Q	probably damaging	Het
Casp1	A	T	9: 5,306,135 (GRCm39)	H340L	probably benign	Het
Cd5	A	G	19: 10,703,750 (GRCm39)	V104A	possibly damaging	Het
Celsr1	T	A	15: 85,785,138 (GRCm39)	E3032V	possibly damaging	Het
Cts7	A	G	13: 61,504,386 (GRCm39)	I59T	probably damaging	Het
Cutc	G	T	19: 43,756,708 (GRCm39)	A267S	probably damaging	Het
Dmwd	A	G	7: 18,814,643 (GRCm39)	Q431R	probably damaging	Het
Dnah6	T	C	6: 73,042,738 (GRCm39)	N3280S	probably benign	Het
Dnah7b	A	T	1: 46,412,508 (GRCm39)	N4039I	probably damaging	Het
Dnaja4	T	C	9: 54,617,918 (GRCm39)	I260T	probably benign	Het
Drd5	T	C	5: 38,477,927 (GRCm39)	F307L	probably damaging	Het
Dsc2	C	T	18: 20,179,300 (GRCm39)	S256N	probably damaging	Het
Dstyk	G	T	1: 132,383,634 (GRCm39)	E617*	probably null	Het
Dusp15	G	A	2: 152,787,396 (GRCm39)	H72Y	probably benign	Het
Dysf	C	T	6: 84,077,216 (GRCm39)	R660*	probably null	Het
Fbxl13	T	A	5: 21,727,146 (GRCm39)	I584L	probably benign	Het
Gsap	T	C	5: 21,391,407 (GRCm39)	L16P	probably damaging	Het
Hgsnat	C	T	8: 26,435,227 (GRCm39)	A636T	possibly damaging	Het
Hivep1	A	G	13: 42,335,147 (GRCm39)	T161A		Het
Hspg2	T	C	4: 137,277,684 (GRCm39)	S2928P	possibly damaging	Het
Ifi214	G	A	1: 173,355,485 (GRCm39)	P108S	probably benign	Het
Il17ra	A	T	6: 120,458,367 (GRCm39)	Y506F	probably damaging	Het
Il9r	T	A	11: 32,144,734 (GRCm39)	Q53L	probably benign	Het
Irf2bp2	C	T	8: 127,319,398 (GRCm39)	G260R	probably damaging	Het
Jdp2	T	A	12: 85,685,626 (GRCm39)	I129N	probably damaging	Het
Kif1b	T	C	4: 149,305,249 (GRCm39)		probably null	Het
Klrd1	A	G	6: 129,573,670 (GRCm39)	T120A	unknown	Het
Lfng	A	G	5: 140,598,283 (GRCm39)	N202D	probably damaging	Het
Ltbp3	A	G	19: 5,802,095 (GRCm39)	E757G	probably damaging	Het
Ltn1	G	A	16: 87,217,211 (GRCm39)	P342L	probably damaging	Het
Lum	A	C	10: 97,404,738 (GRCm39)	Y211S	probably damaging	Het
Ncapd2	G	A	6: 125,160,990 (GRCm39)	R292*	probably null	Het
Nlrc4	T	C	17: 74,753,304 (GRCm39)	T360A	probably damaging	Het
Or4c1	T	C	2: 89,133,727 (GRCm39)	I70V	probably benign	Het
Or7g32	T	C	9: 19,389,357 (GRCm39)	Y63C	probably damaging	Het
Pakap	C	A	4: 57,638,029 (GRCm39)	T22K	possibly damaging	Het
Pde3a	A	G	6: 141,438,036 (GRCm39)	D1035G	probably benign	Het
Phf20l1	A	T	15: 66,484,901 (GRCm39)	K322I	possibly damaging	Het
Pik3r3	A	C	4: 116,149,323 (GRCm39)	N349T	probably benign	Het
Poc1a	A	G	9: 106,227,028 (GRCm39)	Q420R		Het
Prl7d1	A	T	13: 27,898,320 (GRCm39)	M63K	possibly damaging	Het
Rap1gds1	C	A	3: 138,662,061 (GRCm39)	M398I	probably benign	Het
Rapgef6	T	A	11: 54,570,203 (GRCm39)	V1192D	probably damaging	Het
Rif1	T	C	2: 52,001,970 (GRCm39)	V166A		Het
Robo4	T	C	9: 37,322,687 (GRCm39)	Y847H	probably damaging	Het
Sardh	T	C	2: 27,118,326 (GRCm39)	N468S	probably damaging	Het
Sema5a	A	G	15: 32,628,345 (GRCm39)	T553A	probably benign	Het
Serpina12	A	G	12: 104,001,976 (GRCm39)	Y247H	probably damaging	Het
Speer4e2	T	C	5: 15,028,804 (GRCm39)	D29G	probably benign	Het
Ston2	G	T	12: 91,615,276 (GRCm39)	D377E	possibly damaging	Het
Syne1	A	G	10: 5,283,023 (GRCm39)	S1557P	probably damaging	Het
Syt6	C	T	3: 103,482,769 (GRCm39)	R26W	possibly damaging	Het
Tep1	C	T	14: 51,066,684 (GRCm39)	G2305R	possibly damaging	Het
Ticrr	A	G	7: 79,328,771 (GRCm39)	T637A	possibly damaging	Het
Tnn	A	T	1: 159,913,647 (GRCm39)	F1546Y	possibly damaging	Het
Tpr	A	G	1: 150,315,888 (GRCm39)	D2055G	possibly damaging	Het
Trim39	A	G	17: 36,579,862 (GRCm39)	V31A	possibly damaging	Het
Trpc7	G	T	13: 57,035,321 (GRCm39)	T204K	probably benign	Het
Vmn1r81	A	T	7: 11,994,590 (GRCm39)	I6K	probably benign	Het

Other mutations in Urgcp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00503:Urgcp	APN	11	5,666,448 (GRCm39)	missense	possibly damaging	0.94
IGL01832:Urgcp	APN	11	5,667,325 (GRCm39)	missense	probably damaging	0.99
IGL02299:Urgcp	APN	11	5,667,573 (GRCm39)	missense	probably damaging	1.00
IGL02519:Urgcp	APN	11	5,667,745 (GRCm39)	missense	probably benign	0.02
IGL02616:Urgcp	APN	11	5,667,400 (GRCm39)	missense	probably damaging	0.99
IGL02619:Urgcp	APN	11	5,665,752 (GRCm39)	missense	possibly damaging	0.87
IGL03135:Urgcp	APN	11	5,666,091 (GRCm39)	missense	possibly damaging	0.79
IGL03209:Urgcp	APN	11	5,667,238 (GRCm39)	splice site	probably null
R0279:Urgcp	UTSW	11	5,666,989 (GRCm39)	missense	probably benign	0.14
R0555:Urgcp	UTSW	11	5,667,477 (GRCm39)	missense	probably damaging	1.00
R1110:Urgcp	UTSW	11	5,666,004 (GRCm39)	missense	probably benign	0.09
R1595:Urgcp	UTSW	11	5,667,447 (GRCm39)	missense	probably damaging	1.00
R1808:Urgcp	UTSW	11	5,667,242 (GRCm39)	missense	probably damaging	1.00
R1891:Urgcp	UTSW	11	5,666,910 (GRCm39)	missense	probably benign	0.43
R1993:Urgcp	UTSW	11	5,666,526 (GRCm39)	missense	probably damaging	1.00
R3155:Urgcp	UTSW	11	5,666,327 (GRCm39)	missense	probably damaging	1.00
R3769:Urgcp	UTSW	11	5,667,000 (GRCm39)	missense	probably damaging	1.00
R4209:Urgcp	UTSW	11	5,665,878 (GRCm39)	missense	probably damaging	0.99
R4210:Urgcp	UTSW	11	5,665,878 (GRCm39)	missense	probably damaging	0.99
R4211:Urgcp	UTSW	11	5,665,878 (GRCm39)	missense	probably damaging	0.99
R5335:Urgcp	UTSW	11	5,667,754 (GRCm39)	missense	possibly damaging	0.66
R6242:Urgcp	UTSW	11	5,666,691 (GRCm39)	missense	probably benign	0.34
R6971:Urgcp	UTSW	11	5,668,115 (GRCm39)	missense	probably benign	0.34
R7411:Urgcp	UTSW	11	5,668,116 (GRCm39)	missense	probably benign	0.10
R7460:Urgcp	UTSW	11	5,666,622 (GRCm39)	missense	possibly damaging	0.88
R7734:Urgcp	UTSW	11	5,666,406 (GRCm39)	missense	probably benign	0.00
R7809:Urgcp	UTSW	11	5,673,133 (GRCm39)	missense	probably benign	0.02
R8540:Urgcp	UTSW	11	5,667,915 (GRCm39)	missense	probably damaging	1.00
R9052:Urgcp	UTSW	11	5,673,153 (GRCm39)	missense	probably damaging	1.00
R9511:Urgcp	UTSW	11	5,668,128 (GRCm39)	missense	probably damaging	1.00
R9542:Urgcp	UTSW	11	5,667,517 (GRCm39)	missense	possibly damaging	0.77
R9548:Urgcp	UTSW	11	5,667,622 (GRCm39)	missense	possibly damaging	0.88
X0005:Urgcp	UTSW	11	5,668,231 (GRCm39)	missense	probably damaging	1.00
Z1176:Urgcp	UTSW	11	5,667,103 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCAGAATCGGGCAACACAAG -3'
(R):5'- TGGAGACATACCAGGCACAG -3'

Sequencing Primer
(F):5'- CACAAGTGGGAGTGCAAACTGAC -3'
(R):5'- CCTGCAGATCAGTTTTGACAGCATG -3'

Posted On

2019-06-07