Incidental Mutation 'PIT4366001:Cpne9'
ID 554761
Institutional Source Beutler Lab
Gene Symbol Cpne9
Ensembl Gene ENSMUSG00000030270
Gene Name copine family member IX
Synonyms A730016F12Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.234) question?
Stock # PIT4366001 (G1)
Quality Score 169.009
Status Not validated
Chromosome 6
Chromosomal Location 113259244-113282532 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 113271707 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Tryptophan at position 356 (G356W)
Ref Sequence ENSEMBL: ENSMUSP00000044416 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000041203] [ENSMUST00000130191]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000041203
AA Change: G356W

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000044416
Gene: ENSMUSG00000030270
AA Change: G356W

DomainStartEndE-ValueType
C2 14 122 2.12e-10 SMART
C2 143 257 5.15e-9 SMART
VWA 297 495 4.4e-10 SMART
low complexity region 536 553 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000130191
Coding Region Coverage
  • 1x: 93.0%
  • 3x: 90.7%
  • 10x: 85.5%
  • 20x: 73.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aatk C A 11: 119,901,786 (GRCm39) S870I possibly damaging Het
Abca13 T C 11: 9,244,962 (GRCm39) V2275A probably benign Het
Abcb5 T C 12: 118,899,833 (GRCm39) K278R probably damaging Het
Adcy2 TA TAA 13: 68,858,109 (GRCm39) probably benign Het
Add3 C T 19: 53,205,298 (GRCm39) P16L unknown Het
Akap9 T A 5: 4,096,221 (GRCm39) D2365E probably benign Het
Asah1 A G 8: 41,796,783 (GRCm39) S300P possibly damaging Het
Astn1 A T 1: 158,424,779 (GRCm39) H655L probably benign Het
Astn1 A T 1: 158,424,781 (GRCm39) I656F probably benign Het
Bmpr1b T A 3: 141,586,224 (GRCm39) T13S probably benign Het
Camsap2 A G 1: 136,208,055 (GRCm39) F478L Het
Card10 G A 15: 78,671,631 (GRCm39) S611L probably benign Het
Cep68 T C 11: 20,190,007 (GRCm39) N335S probably benign Het
Chac1 T C 2: 119,181,986 (GRCm39) W35R probably damaging Het
Cntn6 T C 6: 104,809,498 (GRCm39) V511A probably benign Het
Dnah10 C A 5: 124,852,588 (GRCm39) T1939K possibly damaging Het
Dock10 T C 1: 80,573,438 (GRCm39) N239D probably benign Het
Dock5 T C 14: 68,062,123 (GRCm39) K415R possibly damaging Het
Dtd2 C A 12: 52,046,582 (GRCm39) D86Y probably damaging Het
Efcab9 A G 11: 32,473,608 (GRCm39) F127S probably damaging Het
Ermp1 T C 19: 29,606,189 (GRCm39) H375R probably benign Het
Frem2 A T 3: 53,560,622 (GRCm39) M1295K probably damaging Het
Gbp7 T G 3: 142,248,712 (GRCm39) I325R probably benign Het
Gpr179 T C 11: 97,227,677 (GRCm39) K1493E probably benign Het
Gucy2g T A 19: 55,226,214 (GRCm39) E234V probably null Het
Itpr1 T A 6: 108,470,718 (GRCm39) C2215* probably null Het
Ltn1 G A 16: 87,177,728 (GRCm39) R1634* probably null Het
Lynx1 A T 15: 74,623,258 (GRCm39) M58K possibly damaging Het
Macc1 T C 12: 119,410,684 (GRCm39) V484A probably benign Het
Map3k9 C T 12: 81,819,535 (GRCm39) V240M possibly damaging Het
Mars1 A G 10: 127,135,267 (GRCm39) M608T possibly damaging Het
Mc2r T C 18: 68,540,826 (GRCm39) M156V probably benign Het
Mchr1 G T 15: 81,121,417 (GRCm39) V56L probably benign Het
Mlxip C T 5: 123,533,173 (GRCm39) P61S probably benign Het
Mtarc1 A G 1: 184,539,383 (GRCm39) F96S probably benign Het
Muc4 A G 16: 32,575,542 (GRCm39) T1557A unknown Het
Myt1 T C 2: 181,467,731 (GRCm39) V1135A probably damaging Het
Ndufaf6 A T 4: 11,073,215 (GRCm39) S76T probably benign Het
Ntrk2 A G 13: 59,208,149 (GRCm39) Y665C probably damaging Het
Oaz3 T G 3: 94,340,901 (GRCm39) R215S unknown Het
Or10x1 T C 1: 174,196,656 (GRCm39) Y58H probably damaging Het
Or5m10b T C 2: 85,699,226 (GRCm39) C97R probably damaging Het
Or5m8 A T 2: 85,822,385 (GRCm39) N75Y probably damaging Het
Or5w1b C T 2: 87,475,534 (GRCm39) W311* probably null Het
Perm1 G T 4: 156,303,192 (GRCm39) V579L probably benign Het
Phyhipl A G 10: 70,404,788 (GRCm39) V140A probably benign Het
Pip5k1c T A 10: 81,144,842 (GRCm39) S228T probably damaging Het
Plekhn1 T G 4: 156,309,268 (GRCm39) T213P probably damaging Het
Pomt2 A T 12: 87,163,303 (GRCm39) probably null Het
Ptcd1 A G 5: 145,088,145 (GRCm39) V622A probably benign Het
Ptn T A 6: 36,718,284 (GRCm39) H127L probably benign Het
Ptprk A T 10: 28,462,015 (GRCm39) M1193L probably benign Het
Ptpru G A 4: 131,527,023 (GRCm39) P650S probably benign Het
Pum2 T A 12: 8,783,390 (GRCm39) L613Q probably damaging Het
Rapgef6 A G 11: 54,582,446 (GRCm39) T1458A probably damaging Het
Sap130 C T 18: 31,810,462 (GRCm39) A470V probably benign Het
Sertad2 C A 11: 20,598,116 (GRCm39) P104Q probably benign Het
Sfrp4 A T 13: 19,814,414 (GRCm39) M324L unknown Het
Sh3bp4 A G 1: 89,073,156 (GRCm39) N668S probably benign Het
Snx30 C A 4: 59,894,653 (GRCm39) D410E probably benign Het
Spata31 C A 13: 65,069,319 (GRCm39) S489* probably null Het
Taok3 T A 5: 117,366,050 (GRCm39) M367K probably benign Het
Tfap2a T C 13: 40,874,850 (GRCm39) N254D possibly damaging Het
Tgtp1 T G 11: 48,877,867 (GRCm39) L279F possibly damaging Het
Tmpo A G 10: 90,999,172 (GRCm39) F205S probably damaging Het
Tmprss5 A T 9: 49,023,517 (GRCm39) I218L probably benign Het
Tti2 A G 8: 31,641,224 (GRCm39) E116G probably benign Het
Vmn2r59 A T 7: 41,695,205 (GRCm39) N402K possibly damaging Het
Other mutations in Cpne9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01472:Cpne9 APN 6 113,269,983 (GRCm39) missense possibly damaging 0.54
IGL02318:Cpne9 APN 6 113,270,699 (GRCm39) missense possibly damaging 0.74
IGL02800:Cpne9 APN 6 113,279,034 (GRCm39) missense probably benign 0.40
IGL02819:Cpne9 APN 6 113,277,624 (GRCm39) missense probably damaging 0.99
IGL03111:Cpne9 APN 6 113,277,571 (GRCm39) missense possibly damaging 0.79
measured UTSW 6 113,266,974 (GRCm39) missense probably damaging 0.98
prudence UTSW 6 113,261,406 (GRCm39) missense possibly damaging 0.69
R0145:Cpne9 UTSW 6 113,277,562 (GRCm39) missense probably damaging 0.97
R0319:Cpne9 UTSW 6 113,271,654 (GRCm39) missense probably damaging 1.00
R0514:Cpne9 UTSW 6 113,266,974 (GRCm39) missense probably damaging 0.98
R0586:Cpne9 UTSW 6 113,272,024 (GRCm39) missense probably damaging 0.96
R0594:Cpne9 UTSW 6 113,267,361 (GRCm39) splice site probably benign
R1464:Cpne9 UTSW 6 113,271,698 (GRCm39) missense probably damaging 1.00
R1464:Cpne9 UTSW 6 113,271,698 (GRCm39) missense probably damaging 1.00
R4184:Cpne9 UTSW 6 113,259,418 (GRCm39) unclassified probably benign
R4243:Cpne9 UTSW 6 113,259,984 (GRCm39) unclassified probably benign
R4256:Cpne9 UTSW 6 113,259,984 (GRCm39) unclassified probably benign
R4258:Cpne9 UTSW 6 113,259,984 (GRCm39) unclassified probably benign
R4412:Cpne9 UTSW 6 113,266,962 (GRCm39) missense possibly damaging 0.78
R4690:Cpne9 UTSW 6 113,279,016 (GRCm39) missense probably damaging 1.00
R5062:Cpne9 UTSW 6 113,281,449 (GRCm39) missense probably damaging 0.99
R5249:Cpne9 UTSW 6 113,270,034 (GRCm39) splice site probably benign
R5437:Cpne9 UTSW 6 113,281,591 (GRCm39) unclassified probably benign
R5523:Cpne9 UTSW 6 113,267,192 (GRCm39) missense probably damaging 1.00
R5979:Cpne9 UTSW 6 113,270,710 (GRCm39) missense probably benign 0.44
R6207:Cpne9 UTSW 6 113,271,734 (GRCm39) missense possibly damaging 0.88
R6849:Cpne9 UTSW 6 113,279,079 (GRCm39) missense probably damaging 0.98
R6989:Cpne9 UTSW 6 113,277,544 (GRCm39) missense possibly damaging 0.95
R7376:Cpne9 UTSW 6 113,266,974 (GRCm39) missense probably damaging 0.98
R7524:Cpne9 UTSW 6 113,279,025 (GRCm39) missense probably damaging 1.00
R7631:Cpne9 UTSW 6 113,279,079 (GRCm39) missense possibly damaging 0.72
R7689:Cpne9 UTSW 6 113,266,965 (GRCm39) missense probably damaging 1.00
R7757:Cpne9 UTSW 6 113,261,406 (GRCm39) missense possibly damaging 0.69
R8134:Cpne9 UTSW 6 113,272,003 (GRCm39) missense probably benign 0.16
R8418:Cpne9 UTSW 6 113,260,398 (GRCm39) missense possibly damaging 0.95
R8810:Cpne9 UTSW 6 113,281,506 (GRCm39) missense probably damaging 0.99
R8833:Cpne9 UTSW 6 113,281,473 (GRCm39) missense probably damaging 1.00
R9174:Cpne9 UTSW 6 113,279,032 (GRCm39) missense probably damaging 1.00
R9503:Cpne9 UTSW 6 113,271,732 (GRCm39) missense possibly damaging 0.67
R9520:Cpne9 UTSW 6 113,281,413 (GRCm39) missense probably damaging 1.00
R9738:Cpne9 UTSW 6 113,267,401 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- CAGGCACAGAATGATGGAGTTC -3'
(R):5'- AAGGTTCAGCTAAGCCCAGC -3'

Sequencing Primer
(F):5'- CACAGAATGATGGAGTTCATGTAGAC -3'
(R):5'- ATCCAGGAGCGCTCTGATC -3'
Posted On 2019-06-07