Incidental Mutation 'PIT4366001:Dtd2'
ID554780
Institutional Source Beutler Lab
Gene Symbol Dtd2
Ensembl Gene ENSMUSG00000020956
Gene NameD-tyrosyl-tRNA deacylase 2
Synonyms
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.063) question?
Stock #PIT4366001 (G1)
Quality Score225.009
Status Not validated
Chromosome12
Chromosomal Location51988312-52006501 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to A at 51999799 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Tyrosine at position 86 (D86Y)
Ref Sequence ENSEMBL: ENSMUSP00000021339 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000021339] [ENSMUST00000085404]
Predicted Effect probably damaging
Transcript: ENSMUST00000021339
AA Change: D86Y

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000021339
Gene: ENSMUSG00000020956
AA Change: D86Y

DomainStartEndE-ValueType
Pfam:Tyr_Deacylase 11 167 1.1e-34 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000085404
AA Change: D86Y

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000082525
Gene: ENSMUSG00000020956
AA Change: D86Y

DomainStartEndE-ValueType
Pfam:Tyr_Deacylase 11 158 6.7e-39 PFAM
Coding Region Coverage
  • 1x: 93.0%
  • 3x: 90.7%
  • 10x: 85.5%
  • 20x: 73.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aatk C A 11: 120,010,960 S870I possibly damaging Het
Abca13 T C 11: 9,294,962 V2275A probably benign Het
Abcb5 T C 12: 118,936,098 K278R probably damaging Het
Adcy2 TA TAA 13: 68,709,990 probably benign Het
Add3 C T 19: 53,216,867 P16L unknown Het
Akap9 T A 5: 4,046,221 D2365E probably benign Het
Asah1 A G 8: 41,343,746 S300P possibly damaging Het
Astn1 A T 1: 158,597,209 H655L probably benign Het
Astn1 A T 1: 158,597,211 I656F probably benign Het
Bmpr1b T A 3: 141,880,463 T13S probably benign Het
Camsap2 A G 1: 136,280,317 F478L Het
Card10 G A 15: 78,787,431 S611L probably benign Het
Cep68 T C 11: 20,240,007 N335S probably benign Het
Chac1 T C 2: 119,351,505 W35R probably damaging Het
Cntn6 T C 6: 104,832,537 V511A probably benign Het
Cpne9 G T 6: 113,294,746 G356W probably damaging Het
Dnah10 C A 5: 124,775,524 T1939K possibly damaging Het
Dock10 T C 1: 80,595,721 N239D probably benign Het
Dock5 T C 14: 67,824,674 K415R possibly damaging Het
Efcab9 A G 11: 32,523,608 F127S probably damaging Het
Ermp1 T C 19: 29,628,789 H375R probably benign Het
Frem2 A T 3: 53,653,201 M1295K probably damaging Het
Gbp7 T G 3: 142,542,951 I325R probably benign Het
Gpr179 T C 11: 97,336,851 K1493E probably benign Het
Gucy2g T A 19: 55,237,782 E234V probably null Het
Itpr1 T A 6: 108,493,757 C2215* probably null Het
Ltn1 G A 16: 87,380,840 R1634* probably null Het
Lynx1 A T 15: 74,751,409 M58K possibly damaging Het
Macc1 T C 12: 119,446,949 V484A probably benign Het
Map3k9 C T 12: 81,772,761 V240M possibly damaging Het
Marc1 A G 1: 184,807,186 F96S probably benign Het
Mars A G 10: 127,299,398 M608T possibly damaging Het
Mc2r T C 18: 68,407,755 M156V probably benign Het
Mchr1 G T 15: 81,237,216 V56L probably benign Het
Mlxip C T 5: 123,395,110 P61S probably benign Het
Muc4 A G 16: 32,754,796 T1557A unknown Het
Myt1 T C 2: 181,825,938 V1135A probably damaging Het
Ndufaf6 A T 4: 11,073,215 S76T probably benign Het
Ntrk2 A G 13: 59,060,335 Y665C probably damaging Het
Oaz3 T G 3: 94,433,594 R215S unknown Het
Olfr1022 T C 2: 85,868,882 C97R probably damaging Het
Olfr1031 A T 2: 85,992,041 N75Y probably damaging Het
Olfr1133 C T 2: 87,645,190 W311* probably null Het
Olfr417 T C 1: 174,369,090 Y58H probably damaging Het
Perm1 G T 4: 156,218,735 V579L probably benign Het
Phyhipl A G 10: 70,568,958 V140A probably benign Het
Pip5k1c T A 10: 81,309,008 S228T probably damaging Het
Plekhn1 T G 4: 156,224,811 T213P probably damaging Het
Pomt2 A T 12: 87,116,529 probably null Het
Ptcd1 A G 5: 145,151,335 V622A probably benign Het
Ptn T A 6: 36,741,349 H127L probably benign Het
Ptprk A T 10: 28,586,019 M1193L probably benign Het
Ptpru G A 4: 131,799,712 P650S probably benign Het
Pum2 T A 12: 8,733,390 L613Q probably damaging Het
Rapgef6 A G 11: 54,691,620 T1458A probably damaging Het
Sap130 C T 18: 31,677,409 A470V probably benign Het
Sertad2 C A 11: 20,648,116 P104Q probably benign Het
Sfrp4 A T 13: 19,630,244 M324L unknown Het
Sh3bp4 A G 1: 89,145,434 N668S probably benign Het
Snx30 C A 4: 59,894,653 D410E probably benign Het
Spata31 C A 13: 64,921,505 S489* probably null Het
Taok3 T A 5: 117,227,985 M367K probably benign Het
Tfap2a T C 13: 40,721,374 N254D possibly damaging Het
Tgtp1 T G 11: 48,987,040 L279F possibly damaging Het
Tmpo A G 10: 91,163,310 F205S probably damaging Het
Tmprss5 A T 9: 49,112,217 I218L probably benign Het
Tti2 A G 8: 31,151,196 E116G probably benign Het
Vmn2r59 A T 7: 42,045,781 N402K possibly damaging Het
Other mutations in Dtd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02182:Dtd2 APN 12 51999709 missense probably benign
IGL02626:Dtd2 APN 12 52004925 nonsense probably null
R0519:Dtd2 UTSW 12 52004959 splice site probably benign
R0741:Dtd2 UTSW 12 51999672 missense probably benign 0.07
R2421:Dtd2 UTSW 12 51999855 missense probably benign 0.25
R3922:Dtd2 UTSW 12 52004951 splice site probably null
R3923:Dtd2 UTSW 12 52004951 splice site probably null
R3924:Dtd2 UTSW 12 52004951 splice site probably null
R5666:Dtd2 UTSW 12 51999860 missense probably damaging 1.00
R5670:Dtd2 UTSW 12 51999860 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GTCCAGCTTTAACACTTGCCTG -3'
(R):5'- CTACAGACTGGGGTTGAAAACTAG -3'

Sequencing Primer
(F):5'- TGTTCCCGTACGTGCCGTG -3'
(R):5'- AGACTGGGGTTGAAAACTAGGTTTTG -3'
Posted On2019-06-07