Mutagenetix > Incidental Mutation

Incidental Mutation 'R0602:Lrtm1'

55506

Institutional Source

Beutler Lab

Gene Symbol

Lrtm1

Ensembl Gene

ENSMUSG00000045776

Gene Name

leucine-rich repeats and transmembrane domains 1

Synonyms

A930016D02Rik

MMRRC Submission

038791-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.088) question?

Stock #

R0602 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28740165-28755599 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 28744179 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000153372 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022567] [ENSMUST00000055662] [ENSMUST00000224708] [ENSMUST00000224760]

AlphaFold

Q8BXQ3

Predicted Effect

probably benign
Transcript: ENSMUST00000022567

SMART Domains

Protein: ENSMUSP00000022567
Gene: ENSMUSG00000021991

Domain	Start	End	E-Value	Type
low complexity region	14	27	N/A	INTRINSIC
Blast:WNT1	28	103	2e-33	BLAST
Pfam:VWA_N	113	229	6.8e-40	PFAM
VWA	254	439	4.13e-24	SMART
Pfam:Cache_1	452	548	3e-32	PFAM
low complexity region	1070	1088	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000055662

SMART Domains

Protein: ENSMUSP00000061828
Gene: ENSMUSG00000045776

Domain	Start	End	E-Value	Type
LRRNT	32	66	4.41e-6	SMART
LRR	65	84	2.33e2	SMART
LRR	85	108	2.67e-1	SMART
LRR	109	131	1.15e1	SMART
LRR_TYP	133	156	3.89e-3	SMART
LRRCT	192	245	8.63e-6	SMART
transmembrane domain	297	319	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000224708

Predicted Effect

probably benign
Transcript: ENSMUST00000224760

Coding Region Coverage

1x: 99.6%
3x: 99.1%
10x: 97.5%
20x: 94.7%

Validation Efficiency

95% (58/61)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9430038I01Rik	T	C	7: 136,978,090 (GRCm39)		probably benign	Het
Arih1	A	G	9: 59,302,154 (GRCm39)		probably benign	Het
Bcl9	T	C	3: 97,113,102 (GRCm39)	I1118V	probably benign	Het
Cap1	T	C	4: 122,766,202 (GRCm39)	E12G	probably damaging	Het
Ccdc168	T	A	1: 44,099,127 (GRCm39)	K657I	possibly damaging	Het
Ccr2	A	G	9: 123,906,658 (GRCm39)	I313V	probably benign	Het
Cd1d2	T	C	3: 86,895,110 (GRCm39)	S161P	probably benign	Het
Cd226	C	T	18: 89,287,135 (GRCm39)	T311I	probably benign	Het
Col25a1	A	G	3: 130,369,063 (GRCm39)		probably null	Het
Cspg4	T	C	9: 56,795,301 (GRCm39)	F1012S	probably damaging	Het
Dnah7b	A	G	1: 46,364,002 (GRCm39)	M3541V	probably damaging	Het
Erbb2	G	A	11: 98,325,097 (GRCm39)	V852M	probably damaging	Het
Fer1l6	A	C	15: 58,449,794 (GRCm39)	T667P	probably damaging	Het
Gal3st2c	A	G	1: 93,936,901 (GRCm39)	Y282C	probably damaging	Het
Glp1r	T	C	17: 31,128,201 (GRCm39)	L60P	probably benign	Het
Gtf2h2	A	G	13: 100,605,533 (GRCm39)	V358A	probably benign	Het
H2ac18	T	C	3: 96,152,866 (GRCm39)		probably benign	Het
Hephl1	T	A	9: 15,000,347 (GRCm39)	I302F	probably damaging	Het
Lgi2	T	C	5: 52,711,765 (GRCm39)	D185G	probably damaging	Het
Megf10	T	G	18: 57,395,172 (GRCm39)	D511E	probably damaging	Het
Myo5c	A	G	9: 75,173,478 (GRCm39)		probably null	Het
Nrbf2	G	A	10: 67,103,605 (GRCm39)	T166M	probably damaging	Het
Nrm	C	A	17: 36,175,156 (GRCm39)	Y61*	probably null	Het
Ola1	A	G	2: 72,924,056 (GRCm39)	Y368H	probably damaging	Het
Or52s1	A	C	7: 102,861,787 (GRCm39)	H229P	possibly damaging	Het
Or9i1b	A	G	19: 13,897,145 (GRCm39)	T254A	probably benign	Het
Or9q2	T	C	19: 13,772,026 (GRCm39)		probably null	Het
Panx1	A	G	9: 14,921,500 (GRCm39)	L125P	probably damaging	Het
Pappa2	A	G	1: 158,590,625 (GRCm39)		probably benign	Het
Parp6	A	G	9: 59,556,648 (GRCm39)		probably benign	Het
Pomgnt2	A	G	9: 121,811,339 (GRCm39)	Y481H	probably benign	Het
Ppp4c	A	G	7: 126,388,254 (GRCm39)		probably benign	Het
Prl8a8	T	A	13: 27,692,533 (GRCm39)		probably benign	Het
Prpf40b	C	A	15: 99,202,352 (GRCm39)	A70E	unknown	Het
Ptgfr	G	A	3: 151,540,839 (GRCm39)	T223M	probably damaging	Het
Ptprc	C	T	1: 138,017,223 (GRCm39)		probably benign	Het
Rgs22	T	C	15: 36,140,018 (GRCm39)		probably benign	Het
Rpgrip1	A	G	14: 52,371,313 (GRCm39)	E344G	possibly damaging	Het
Sgca	A	T	11: 94,854,061 (GRCm39)	I383N	possibly damaging	Het
Sgms2	T	A	3: 131,118,756 (GRCm39)		probably null	Het
Slc9b1	C	A	3: 135,103,516 (GRCm39)	Q549K	probably benign	Het
Smc4	G	C	3: 68,916,871 (GRCm39)	A187P	probably damaging	Het
Smco1	A	G	16: 32,092,062 (GRCm39)	S47G	probably damaging	Het
Sobp	T	A	10: 42,898,385 (GRCm39)	E400V	probably damaging	Het
Sp140l1	C	G	1: 85,077,226 (GRCm39)	K113N	probably benign	Het
Stil	T	A	4: 114,881,620 (GRCm39)		probably benign	Het
Sult3a2	A	T	10: 33,658,044 (GRCm39)	M23K	probably benign	Het
Syne2	AGAGTGAG	AGAGTGAGTGAG	12: 76,144,734 (GRCm39)		probably null	Het
Tcam1	G	A	11: 106,174,904 (GRCm39)	E120K	probably benign	Het
Tcof1	C	A	18: 60,966,605 (GRCm39)	G329W	probably damaging	Het
Ttc13	A	T	8: 125,401,105 (GRCm39)	S624T	probably damaging	Het
Vmn1r171	G	T	7: 23,332,602 (GRCm39)	V276L	probably benign	Het
Vps13b	T	C	15: 35,422,514 (GRCm39)	L158P	probably damaging	Het
Vps54	A	G	11: 21,256,434 (GRCm39)	I634M	possibly damaging	Het
Vwa8	T	G	14: 79,258,060 (GRCm39)	S736R	probably benign	Het

Other mutations in Lrtm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02191:Lrtm1	APN	14	28,743,906 (GRCm39)	missense	probably benign	0.00
R0102:Lrtm1	UTSW	14	28,744,184 (GRCm39)	splice site	probably benign
R0102:Lrtm1	UTSW	14	28,744,184 (GRCm39)	splice site	probably benign
R5214:Lrtm1	UTSW	14	28,743,651 (GRCm39)	missense	possibly damaging	0.58
R5253:Lrtm1	UTSW	14	28,743,801 (GRCm39)	missense	probably benign	0.13
R5787:Lrtm1	UTSW	14	28,743,947 (GRCm39)	missense	possibly damaging	0.89
R5937:Lrtm1	UTSW	14	28,743,787 (GRCm39)	missense	possibly damaging	0.90
R6238:Lrtm1	UTSW	14	28,749,628 (GRCm39)	missense	probably benign	0.02
R6850:Lrtm1	UTSW	14	28,749,407 (GRCm39)	missense	probably benign	0.00
R7304:Lrtm1	UTSW	14	28,744,075 (GRCm39)	missense	probably damaging	0.97
R7363:Lrtm1	UTSW	14	28,743,850 (GRCm39)	missense	probably damaging	1.00
R7385:Lrtm1	UTSW	14	28,749,673 (GRCm39)	missense	probably benign	0.00
R8181:Lrtm1	UTSW	14	28,743,894 (GRCm39)	missense	probably damaging	1.00
R9299:Lrtm1	UTSW	14	28,743,714 (GRCm39)	missense	probably damaging	1.00
RF036:Lrtm1	UTSW	14	28,743,400 (GRCm39)	frame shift	probably null
RF063:Lrtm1	UTSW	14	28,743,400 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- AGAAAGCAGCTTTGCCCATGCC -3'
(R):5'- GCACACTGTGATGAGCATAACACCC -3'

Sequencing Primer
(F):5'- GGGAGCTAGATCTTTCATCCAAC -3'
(R):5'- GTGATGAGCATAACACCCAATGTC -3'

Posted On

2013-07-11