Incidental Mutation 'PIT4445001:Agl'
ID 555381
Institutional Source Beutler Lab
Gene Symbol Agl
Ensembl Gene ENSMUSG00000033400
Gene Name amylo-1,6-glucosidase, 4-alpha-glucanotransferase
Synonyms 9430004C13Rik, 9630046L06Rik, 1110061O17Rik
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.307) question?
Stock # PIT4445001 (G1)
Quality Score 225.009
Status Not validated
Chromosome 3
Chromosomal Location 116739999-116808166 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 116771460 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 382 (M382V)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040603] [ENSMUST00000159742] [ENSMUST00000161336] [ENSMUST00000162792]
AlphaFold F8VPN4
Predicted Effect probably benign
Transcript: ENSMUST00000040603
AA Change: M1047V

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000044012
Gene: ENSMUSG00000033400
AA Change: M1047V

DomainStartEndE-ValueType
Pfam:hGDE_N 31 116 4.8e-24 PFAM
Pfam:hDGE_amylase 120 550 9.6e-167 PFAM
Pfam:hGDE_central 697 974 2e-90 PFAM
Pfam:GDE_C 1044 1527 8.5e-145 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000159742
AA Change: M1047V

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000143582
Gene: ENSMUSG00000033400
AA Change: M1047V

DomainStartEndE-ValueType
Pfam:hGDE_N 31 116 2.1e-20 PFAM
Pfam:hDGE_amylase 120 550 7.8e-164 PFAM
Pfam:hGDE_central 697 974 6.2e-87 PFAM
Pfam:GDE_C 1043 1279 6.7e-61 PFAM
Predicted Effect
SMART Domains Protein: ENSMUSP00000123985
Gene: ENSMUSG00000033400
AA Change: M382V

DomainStartEndE-ValueType
Pfam:hGDE_central 33 310 2.8e-87 PFAM
Pfam:GDE_C 379 830 1.3e-126 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000161336
SMART Domains Protein: ENSMUSP00000123877
Gene: ENSMUSG00000033400

DomainStartEndE-ValueType
Pfam:hGDE_N 30 117 2.1e-29 PFAM
Pfam:hDGE_amylase 120 230 3.7e-43 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000162792
AA Change: M1047V

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000124149
Gene: ENSMUSG00000033400
AA Change: M1047V

DomainStartEndE-ValueType
Pfam:hGDE_N 30 117 4e-28 PFAM
Pfam:hDGE_amylase 120 550 1.4e-167 PFAM
Pfam:hGDE_central 697 975 5.6e-95 PFAM
Pfam:GDE_C 1061 1527 1.1e-137 PFAM
Coding Region Coverage
  • 1x: 93.5%
  • 3x: 90.8%
  • 10x: 84.5%
  • 20x: 70.9%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the glycogen debrancher enzyme which is involved in glycogen degradation. This enzyme has two independent catalytic activities which occur at different sites on the protein: a 4-alpha-glucotransferase activity and a amylo-1,6-glucosidase activity. Mutations in this gene are associated with glycogen storage disease although a wide range of enzymatic and clinical variability occurs which may be due to tissue-specific alternative splicing. Alternatively spliced transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous inactivation of this gene leads to hypoglycemia, altered blood biochemistry, severe hepatomegaly, glycogen accumulation in the liver, heart, skeletal muscle and other tissues, motor impairment, and premature death. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca8a T C 11: 110,075,551 (GRCm38) K419E probably damaging Het
Adam7 T A 14: 68,509,748 (GRCm38) K587N possibly damaging Het
Agpat3 A T 10: 78,274,093 (GRCm38) F341I possibly damaging Het
Ampd2 A T 3: 108,075,012 (GRCm38) L767Q probably damaging Het
Arhgap28 A T 17: 67,896,235 (GRCm38) D124E possibly damaging Het
Arhgap32 T C 9: 32,260,856 (GRCm38) L1644P probably damaging Het
Asic4 T C 1: 75,451,127 (GRCm38) V99A probably benign Het
Asns T A 6: 7,689,277 (GRCm38) N75I probably damaging Het
Atp10a A G 7: 58,803,467 (GRCm38) D798G probably damaging Het
Atp8a1 A G 5: 67,622,660 (GRCm38) V1145A Het
BC017158 A G 7: 128,276,534 (GRCm38) V243A probably benign Het
Ccdc171 A G 4: 83,661,747 (GRCm38) Q577R probably damaging Het
Cd247 T A 1: 165,861,036 (GRCm38) D154E probably damaging Het
Ceacam1 A T 7: 25,476,456 (GRCm38) N104K probably damaging Het
Chfr A G 5: 110,151,677 (GRCm38) D312G possibly damaging Het
Ddb1 C A 19: 10,625,970 (GRCm38) L881I probably damaging Het
Dgkh A T 14: 78,575,942 (GRCm38) I1032N possibly damaging Het
Efcab6 A T 15: 83,904,267 (GRCm38) V942D probably benign Het
Fmo5 A G 3: 97,651,528 (GRCm38) T435A probably benign Het
Fpr1 T C 17: 17,876,893 (GRCm38) Q278R probably benign Het
Fzr1 C T 10: 81,369,394 (GRCm38) W256* probably null Het
Gabrb1 T C 5: 72,108,782 (GRCm38) S261P probably damaging Het
Galr2 G T 11: 116,281,648 (GRCm38) A55S probably benign Het
Gbp2 A T 3: 142,637,466 (GRCm38) K581N probably benign Het
Gm7682 T G 5: 94,448,507 (GRCm38) W468G probably benign Het
Gria1 A T 11: 57,185,838 (GRCm38) Y89F probably damaging Het
Ibsp T A 5: 104,302,304 (GRCm38) I26N possibly damaging Het
Igf1r T C 7: 68,207,463 (GRCm38) F1058L probably damaging Het
Ighv1-16 A C 12: 114,666,060 (GRCm38) C36G probably benign Het
Igll1 T C 16: 16,860,919 (GRCm38) T176A probably benign Het
Ilkap T C 1: 91,385,345 (GRCm38) T143A probably benign Het
Kdm3b A T 18: 34,793,115 (GRCm38) K103* probably null Het
Mphosph9 A G 5: 124,298,790 (GRCm38) I497T possibly damaging Het
Mrgpra3 G A 7: 47,590,160 (GRCm38) T6I possibly damaging Het
Mrpl38 T C 11: 116,132,558 (GRCm38) probably null Het
Myo3a A T 2: 22,542,415 (GRCm38) E813V possibly damaging Het
Myo7b G T 18: 31,959,466 (GRCm38) Q2093K possibly damaging Het
Myo7b T C 18: 31,962,352 (GRCm38) K1851R probably damaging Het
P3h2 T A 16: 25,984,999 (GRCm38) D339V probably benign Het
Pcdhb6 C A 18: 37,335,247 (GRCm38) P407Q possibly damaging Het
Plch2 C A 4: 155,009,026 (GRCm38) R153L probably damaging Het
Plppr4 G A 3: 117,360,308 (GRCm38) probably benign Het
Ppp1r3a A G 6: 14,717,777 (GRCm38) F1046S probably damaging Het
Prkacb A T 3: 146,755,691 (GRCm38) L107M probably benign Het
Ranbp17 A G 11: 33,481,020 (GRCm38) probably null Het
Rasl11b C A 5: 74,197,333 (GRCm38) P88Q probably damaging Het
Rcc2 A G 4: 140,721,149 (GRCm38) E503G possibly damaging Het
Rnf216 T A 5: 143,086,003 (GRCm38) K407N probably damaging Het
Scrn3 G A 2: 73,318,329 (GRCm38) M81I possibly damaging Het
Scube2 T C 7: 109,809,180 (GRCm38) T687A probably benign Het
Serpinb10 T A 1: 107,535,998 (GRCm38) F3L probably benign Het
Sgcb C T 5: 73,639,812 (GRCm38) V202I probably damaging Het
Sgce A G 6: 4,689,654 (GRCm38) V429A possibly damaging Het
Sh3rf2 T C 18: 42,153,164 (GRCm38) V574A probably benign Het
Sncaip T C 18: 52,868,944 (GRCm38) L179S probably damaging Het
Sntg2 A T 12: 30,312,572 (GRCm38) D58E probably damaging Het
Taar3 T C 10: 23,949,688 (GRCm38) I44T possibly damaging Het
Tmem87b G A 2: 128,831,471 (GRCm38) V227I probably benign Het
Tnfsf9 T C 17: 57,105,517 (GRCm38) L29P possibly damaging Het
Tnip2 T C 5: 34,496,871 (GRCm38) H391R probably benign Het
Traf5 A G 1: 191,997,807 (GRCm38) Y125H Het
Ttc23 T G 7: 67,667,213 (GRCm38) I77M probably damaging Het
Ube2l3 T C 16: 17,160,172 (GRCm38) N43S probably benign Het
Vars2 A T 17: 35,666,211 (GRCm38) C142* probably null Het
Vmn2r15 A C 5: 109,287,142 (GRCm38) D565E probably damaging Het
Vmn2r56 C T 7: 12,715,226 (GRCm38) probably null Het
Vmn2r79 A T 7: 87,002,200 (GRCm38) D269V possibly damaging Het
Vmn2r85 A T 10: 130,425,703 (GRCm38) M255K probably benign Het
Wfdc6a T A 2: 164,579,826 (GRCm38) *137C probably null Het
Wipi2 T C 5: 142,666,884 (GRCm38) V417A probably benign Het
Xirp2 G T 2: 67,509,772 (GRCm38) V786L possibly damaging Het
Zdhhc13 G A 7: 48,795,949 (GRCm38) G26S probably benign Het
Zscan25 T A 5: 145,290,612 (GRCm38) V362D probably damaging Het
Other mutations in Agl
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00235:Agl APN 3 116,771,483 (GRCm38) missense probably benign 0.10
IGL00500:Agl APN 3 116,772,820 (GRCm38) missense probably damaging 1.00
IGL00691:Agl APN 3 116,779,258 (GRCm38) missense possibly damaging 0.46
IGL00711:Agl APN 3 116,793,627 (GRCm38) missense probably damaging 1.00
IGL01291:Agl APN 3 116,772,789 (GRCm38) missense possibly damaging 0.49
IGL01641:Agl APN 3 116,784,455 (GRCm38) nonsense probably null
IGL01860:Agl APN 3 116,772,526 (GRCm38) splice site probably benign
IGL01893:Agl APN 3 116,788,549 (GRCm38) missense probably damaging 0.97
IGL02193:Agl APN 3 116,779,166 (GRCm38) missense probably damaging 0.99
IGL02379:Agl APN 3 116,779,091 (GRCm38) missense probably damaging 1.00
IGL02485:Agl APN 3 116,779,080 (GRCm38) missense probably benign
IGL02644:Agl APN 3 116,786,597 (GRCm38) missense probably damaging 1.00
IGL02673:Agl APN 3 116,781,599 (GRCm38) missense probably benign 0.01
IGL02693:Agl APN 3 116,746,428 (GRCm38) missense possibly damaging 0.67
IGL02733:Agl APN 3 116,780,997 (GRCm38) missense probably benign
IGL03089:Agl APN 3 116,781,023 (GRCm38) missense probably damaging 1.00
IGL03271:Agl APN 3 116,779,127 (GRCm38) missense probably benign 0.00
ANU05:Agl UTSW 3 116,772,789 (GRCm38) missense possibly damaging 0.49
R0013:Agl UTSW 3 116,776,608 (GRCm38) nonsense probably null
R0013:Agl UTSW 3 116,776,608 (GRCm38) nonsense probably null
R0022:Agl UTSW 3 116,793,836 (GRCm38) splice site probably null
R0092:Agl UTSW 3 116,793,804 (GRCm38) missense probably damaging 1.00
R0226:Agl UTSW 3 116,752,071 (GRCm38) missense probably damaging 1.00
R0440:Agl UTSW 3 116,758,806 (GRCm38) missense probably damaging 1.00
R0488:Agl UTSW 3 116,754,962 (GRCm38) nonsense probably null
R0504:Agl UTSW 3 116,786,784 (GRCm38) missense probably damaging 0.99
R0689:Agl UTSW 3 116,793,628 (GRCm38) missense probably damaging 1.00
R0715:Agl UTSW 3 116,752,176 (GRCm38) missense probably damaging 1.00
R0893:Agl UTSW 3 116,753,286 (GRCm38) missense probably benign 0.04
R1403:Agl UTSW 3 116,782,597 (GRCm38) missense probably benign 0.12
R1403:Agl UTSW 3 116,782,597 (GRCm38) missense probably benign 0.12
R1432:Agl UTSW 3 116,746,693 (GRCm38) missense probably damaging 1.00
R1465:Agl UTSW 3 116,771,372 (GRCm38) missense probably benign 0.35
R1465:Agl UTSW 3 116,771,372 (GRCm38) missense probably benign 0.35
R1540:Agl UTSW 3 116,780,735 (GRCm38) missense probably benign 0.01
R1624:Agl UTSW 3 116,787,246 (GRCm38) missense probably benign 0.30
R1640:Agl UTSW 3 116,752,090 (GRCm38) missense probably benign 0.02
R1834:Agl UTSW 3 116,788,351 (GRCm38) missense probably benign 0.31
R1853:Agl UTSW 3 116,779,322 (GRCm38) nonsense probably null
R2004:Agl UTSW 3 116,781,265 (GRCm38) missense probably damaging 1.00
R2184:Agl UTSW 3 116,780,777 (GRCm38) missense probably benign 0.00
R2227:Agl UTSW 3 116,788,312 (GRCm38) missense possibly damaging 0.78
R3053:Agl UTSW 3 116,791,033 (GRCm38) missense probably damaging 1.00
R4181:Agl UTSW 3 116,746,630 (GRCm38) missense probably damaging 1.00
R4241:Agl UTSW 3 116,754,848 (GRCm38) intron probably benign
R4284:Agl UTSW 3 116,752,178 (GRCm38) missense possibly damaging 0.83
R4285:Agl UTSW 3 116,752,178 (GRCm38) missense possibly damaging 0.83
R4302:Agl UTSW 3 116,746,630 (GRCm38) missense probably damaging 1.00
R4791:Agl UTSW 3 116,786,528 (GRCm38) critical splice donor site probably null
R4854:Agl UTSW 3 116,778,618 (GRCm38) critical splice donor site probably null
R4968:Agl UTSW 3 116,788,526 (GRCm38) missense probably benign 0.31
R5075:Agl UTSW 3 116,793,807 (GRCm38) missense probably damaging 1.00
R5219:Agl UTSW 3 116,778,721 (GRCm38) missense possibly damaging 0.81
R5274:Agl UTSW 3 116,772,486 (GRCm38) missense probably damaging 1.00
R5347:Agl UTSW 3 116,791,165 (GRCm38) missense probably damaging 1.00
R5399:Agl UTSW 3 116,781,628 (GRCm38) missense probably damaging 1.00
R5511:Agl UTSW 3 116,788,560 (GRCm38) missense possibly damaging 0.81
R5763:Agl UTSW 3 116,753,360 (GRCm38) missense probably damaging 1.00
R5827:Agl UTSW 3 116,781,054 (GRCm38) missense probably damaging 1.00
R5964:Agl UTSW 3 116,793,774 (GRCm38) missense probably damaging 1.00
R5967:Agl UTSW 3 116,793,708 (GRCm38) missense probably benign 0.06
R5986:Agl UTSW 3 116,772,496 (GRCm38) missense probably damaging 1.00
R6127:Agl UTSW 3 116,758,329 (GRCm38) missense probably damaging 1.00
R6209:Agl UTSW 3 116,785,196 (GRCm38) nonsense probably null
R6252:Agl UTSW 3 116,787,229 (GRCm38) critical splice donor site probably null
R6337:Agl UTSW 3 116,786,777 (GRCm38) missense possibly damaging 0.65
R6366:Agl UTSW 3 116,791,117 (GRCm38) missense probably damaging 1.00
R6441:Agl UTSW 3 116,771,459 (GRCm38) missense probably benign 0.21
R6647:Agl UTSW 3 116,750,411 (GRCm38) missense probably damaging 1.00
R6678:Agl UTSW 3 116,753,320 (GRCm38) missense probably damaging 0.99
R6736:Agl UTSW 3 116,781,680 (GRCm38) missense probably damaging 0.98
R7141:Agl UTSW 3 116,753,286 (GRCm38) missense probably benign 0.04
R7143:Agl UTSW 3 116,792,021 (GRCm38) missense probably damaging 0.99
R7204:Agl UTSW 3 116,793,820 (GRCm38) missense probably benign 0.04
R7259:Agl UTSW 3 116,784,581 (GRCm38) missense probably damaging 1.00
R7393:Agl UTSW 3 116,791,156 (GRCm38) missense probably benign
R7426:Agl UTSW 3 116,758,755 (GRCm38) missense
R7559:Agl UTSW 3 116,752,115 (GRCm38) missense
R7587:Agl UTSW 3 116,792,087 (GRCm38) missense probably damaging 1.00
R7609:Agl UTSW 3 116,807,279 (GRCm38) missense possibly damaging 0.93
R7657:Agl UTSW 3 116,779,163 (GRCm38) missense
R7715:Agl UTSW 3 116,758,256 (GRCm38) missense
R7735:Agl UTSW 3 116,785,146 (GRCm38) missense probably benign 0.21
R7770:Agl UTSW 3 116,758,237 (GRCm38) critical splice donor site probably null
R7980:Agl UTSW 3 116,792,181 (GRCm38) missense probably benign 0.08
R8186:Agl UTSW 3 116,758,908 (GRCm38) missense possibly damaging 0.92
R8215:Agl UTSW 3 116,788,644 (GRCm38) missense probably damaging 1.00
R8336:Agl UTSW 3 116,772,846 (GRCm38) missense
R8709:Agl UTSW 3 116,772,472 (GRCm38) missense
R9545:Agl UTSW 3 116,788,689 (GRCm38) missense possibly damaging 0.96
X0065:Agl UTSW 3 116,781,330 (GRCm38) nonsense probably null
Z1177:Agl UTSW 3 116,781,036 (GRCm38) missense
Predicted Primers PCR Primer
(F):5'- ACCATTACAGCTGTTCCCAC -3'
(R):5'- GTGTCTAGCAAGCATACGGC -3'

Sequencing Primer
(F):5'- ACAGCTGTTCCCACCTGAC -3'
(R):5'- TCTGTAATGGGACCCAATGC -3'
Posted On 2019-06-07