Mutagenetix > Incidental Mutations

Incidental Mutation 'PIT4618001:Mdn1'

555684

Institutional Source

Beutler Lab

Gene Symbol

Mdn1

Ensembl Gene

ENSMUSG00000058006

Gene Name

midasin AAA ATPase 1

Synonyms

4833432B22Rik, LOC213784, D4Abb1e

Accession Numbers

Genbank: NM_001081392; MGI: 1926159

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

PIT4618001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

32657119-32775217 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 32746527 bp

Zygosity

Heterozygous

Amino Acid Change

Alanine to Serine at position 4158 (A4158S)

Ref Sequence

ENSEMBL: ENSMUSP00000071569 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071642] [ENSMUST00000178134]

Predicted Effect

probably benign
Transcript: ENSMUST00000071642
AA Change: A4158S

PolyPhen 2 Score 0.197 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000071569
Gene: ENSMUSG00000058006
AA Change: A4158S

Domain	Start	End	E-Value	Type
low complexity region	48	75	N/A	INTRINSIC
low complexity region	258	270	N/A	INTRINSIC
Pfam:AAA_5	324	459	7.4e-19	PFAM
AAA	666	908	1.06e-6	SMART
AAA	1072	1217	2.09e-1	SMART
AAA	1378	1544	8.27e-9	SMART
AAA	1740	1893	6.78e-2	SMART
AAA	2053	2309	1.62e0	SMART
low complexity region	3181	3193	N/A	INTRINSIC
low complexity region	3541	3552	N/A	INTRINSIC
low complexity region	3557	3565	N/A	INTRINSIC
low complexity region	4189	4203	N/A	INTRINSIC
low complexity region	4339	4353	N/A	INTRINSIC
low complexity region	4672	4681	N/A	INTRINSIC
low complexity region	4735	4756	N/A	INTRINSIC
low complexity region	4769	4790	N/A	INTRINSIC
low complexity region	4886	4905	N/A	INTRINSIC
low complexity region	4924	4937	N/A	INTRINSIC
coiled coil region	4957	4983	N/A	INTRINSIC
low complexity region	5000	5017	N/A	INTRINSIC
low complexity region	5176	5192	N/A	INTRINSIC
low complexity region	5315	5329	N/A	INTRINSIC
VWA	5375	5556	2.73e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000178134
AA Change: A4158S

PolyPhen 2 Score 0.197 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000136222
Gene: ENSMUSG00000058006
AA Change: A4158S

Domain	Start	End	E-Value	Type
low complexity region	48	75	N/A	INTRINSIC
low complexity region	258	270	N/A	INTRINSIC
Pfam:AAA_5	324	459	4.4e-19	PFAM
AAA	666	908	1.06e-6	SMART
AAA	1072	1217	2.09e-1	SMART
AAA	1378	1544	8.27e-9	SMART
AAA	1740	1893	6.78e-2	SMART
AAA	2053	2309	1.62e0	SMART
low complexity region	3181	3193	N/A	INTRINSIC
low complexity region	3541	3552	N/A	INTRINSIC
low complexity region	3557	3565	N/A	INTRINSIC
low complexity region	4189	4203	N/A	INTRINSIC
low complexity region	4339	4353	N/A	INTRINSIC
low complexity region	4667	4676	N/A	INTRINSIC
low complexity region	4730	4751	N/A	INTRINSIC
low complexity region	4764	4785	N/A	INTRINSIC
low complexity region	4881	4900	N/A	INTRINSIC
low complexity region	4919	4932	N/A	INTRINSIC
coiled coil region	4952	4978	N/A	INTRINSIC
low complexity region	4992	5010	N/A	INTRINSIC
low complexity region	5169	5185	N/A	INTRINSIC
low complexity region	5308	5322	N/A	INTRINSIC
VWA	5368	5549	2.73e-6	SMART

Coding Region Coverage

1x: 93.4%
3x: 91.0%
10x: 85.9%
20x: 75.2%

Validation Efficiency

Allele List at MGI

All alleles(29) : Targeted, other(2) Gene trapped(27)

Other mutations in this stock

Total: 37 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700028K03Rik	A	T	5: 107,545,709	D64V	probably damaging	Het
Ankdd1a	A	C	9: 65,507,650	I268S	possibly damaging	Het
Atad3a	C	T	4: 155,750,138	R402Q	probably benign	Het
C3ar1	A	G	6: 122,850,787	V157A	probably benign	Het
Cd55	C	T	1: 130,456,869	V206I	probably benign	Het
Cd8a	A	G	6: 71,373,677	D42G	possibly damaging	Het
Cemip	G	T	7: 83,943,939	F1185L	probably benign	Het
Cfap58	A	G	19: 47,975,514	D527G	probably damaging	Het
Cyp2a12	C	A	7: 27,034,773	S377Y	probably benign	Het
Dapk2	A	G	9: 66,268,686	D289G	probably benign	Het
Efcab6	G	A	15: 83,983,446	A277V	probably benign	Het
Ephx2	A	T	14: 66,102,222	F250L	probably damaging	Het
Flg2	A	T	3: 93,203,781	S1039C	unknown	Het
Gm609	A	G	16: 45,443,934	F87S	probably benign	Het
Gramd1a	A	G	7: 31,132,596	V674A	probably benign	Het
Gtf2a1	A	C	12: 91,567,769	V237G	probably benign	Het
I830077J02Rik	G	A	3: 105,926,570	T90M	probably damaging	Het
Jagn1	T	A	6: 113,447,437	L90H	probably damaging	Het
Myh11	G	A	16: 14,201,066	A1839V		Het
Olr1	G	A	6: 129,499,906	A132V	probably damaging	Het
Paqr3	A	T	5: 97,103,471	H131Q	possibly damaging	Het
Pde4b	A	T	4: 102,602,812	T397S	probably benign	Het
Pon1	A	G	6: 5,168,349	C353R	probably damaging	Het
Ppie	G	A	4: 123,138,868	T43I	probably null	Het
Prr5l	A	G	2: 101,758,530	F92L	probably damaging	Het
Rai14	T	C	15: 10,575,156	Y601C	probably damaging	Het
Rasal1	A	G	5: 120,670,376	D491G	probably damaging	Het
Rbm12b1	T	A	4: 12,145,441	V471E	probably damaging	Het
Rpusd2	T	C	2: 119,038,452	L452P	possibly damaging	Het
Scgb2b24	A	T	7: 33,738,611	C24S	probably damaging	Het
Slc17a5	C	T	9: 78,538,248	V468M	possibly damaging	Het
Tcp10c	A	G	17: 13,356,510	K117R	possibly damaging	Het
Ubash3b	A	G	9: 41,016,627	S584P	probably benign	Het
Vps13b	C	T	15: 35,709,240	R1778C	probably damaging	Het
Ythdc2	A	G	18: 44,834,598	I220M	probably benign	Het
Zfp474	C	A	18: 52,638,404	T43K	probably damaging	Het
Zscan4-ps3	G	A	7: 11,613,334	M432I	probably benign	Het

Other mutations in Mdn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Mdn1	APN	4	32723651	missense	probably damaging	1.00
IGL00426:Mdn1	APN	4	32719214	missense	possibly damaging	0.91
IGL00570:Mdn1	APN	4	32735719	missense	probably benign
IGL00573:Mdn1	APN	4	32666619	critical splice donor site	probably null
IGL00983:Mdn1	APN	4	32735525	missense	probably damaging	1.00
IGL01288:Mdn1	APN	4	32730864	missense	probably benign	0.00
IGL01359:Mdn1	APN	4	32743686	missense	probably benign	0.10
IGL01457:Mdn1	APN	4	32715922	missense	possibly damaging	0.82
IGL01530:Mdn1	APN	4	32711938	splice site	probably benign
IGL01684:Mdn1	APN	4	32726857	missense	probably benign
IGL01753:Mdn1	APN	4	32708483	missense	probably benign
IGL01901:Mdn1	APN	4	32669591	missense	probably damaging	1.00
IGL01952:Mdn1	APN	4	32723657	missense	possibly damaging	0.82
IGL01960:Mdn1	APN	4	32758393	missense	probably benign	0.14
IGL02019:Mdn1	APN	4	32749948	missense	possibly damaging	0.93
IGL02100:Mdn1	APN	4	32715708	missense	possibly damaging	0.90
IGL02117:Mdn1	APN	4	32709364	missense	probably benign	0.00
IGL02154:Mdn1	APN	4	32740395	missense	probably benign	0.35
IGL02216:Mdn1	APN	4	32739092	missense	probably benign	0.03
IGL02371:Mdn1	APN	4	32676860	splice site	probably benign
IGL02396:Mdn1	APN	4	32700120	missense	probably damaging	0.99
IGL02454:Mdn1	APN	4	32694674	critical splice donor site	probably null
IGL02502:Mdn1	APN	4	32670579	missense	possibly damaging	0.69
IGL02883:Mdn1	APN	4	32763199	missense	probably benign	0.05
IGL02946:Mdn1	APN	4	32734366	missense	probably damaging	0.98
IGL02950:Mdn1	APN	4	32713360	splice site	probably benign
IGL03076:Mdn1	APN	4	32735564	missense	probably damaging	0.97
IGL03129:Mdn1	APN	4	32729994	missense	possibly damaging	0.47
IGL03234:Mdn1	APN	4	32732842	missense	probably benign	0.06
3-1:Mdn1	UTSW	4	32725967	critical splice donor site	probably null
IGL03046:Mdn1	UTSW	4	32694495	missense	possibly damaging	0.73
P0035:Mdn1	UTSW	4	32749934	missense	probably benign	0.05
PIT4508001:Mdn1	UTSW	4	32719223	missense	probably damaging	0.97
R0008:Mdn1	UTSW	4	32718317	missense	possibly damaging	0.47
R0110:Mdn1	UTSW	4	32738619	missense	probably benign	0.20
R0125:Mdn1	UTSW	4	32729956	missense	probably damaging	0.98
R0257:Mdn1	UTSW	4	32693534	missense	probably damaging	0.99
R0266:Mdn1	UTSW	4	32741835	missense	probably damaging	0.99
R0349:Mdn1	UTSW	4	32750318	missense	probably damaging	1.00
R0362:Mdn1	UTSW	4	32746439	critical splice acceptor site	probably null
R0421:Mdn1	UTSW	4	32684707	missense	probably benign	0.39
R0450:Mdn1	UTSW	4	32738619	missense	probably benign	0.20
R0465:Mdn1	UTSW	4	32699204	splice site	probably benign
R0469:Mdn1	UTSW	4	32738619	missense	probably benign	0.20
R0477:Mdn1	UTSW	4	32750928	missense	probably benign	0.02
R0481:Mdn1	UTSW	4	32767182	splice site	probably benign
R0504:Mdn1	UTSW	4	32698916	splice site	probably benign
R0522:Mdn1	UTSW	4	32672837	missense	probably benign	0.09
R0550:Mdn1	UTSW	4	32730479	missense	probably benign	0.13
R0607:Mdn1	UTSW	4	32712014	missense	probably damaging	1.00
R0607:Mdn1	UTSW	4	32732829	missense	probably benign	0.36
R0664:Mdn1	UTSW	4	32768011	nonsense	probably null
R0701:Mdn1	UTSW	4	32699263	missense	probably benign	0.00
R0801:Mdn1	UTSW	4	32668895	missense	probably benign	0.04
R0841:Mdn1	UTSW	4	32752032	missense	probably benign	0.23
R0849:Mdn1	UTSW	4	32741835	missense	probably damaging	0.99
R0893:Mdn1	UTSW	4	32701713	missense	probably benign	0.01
R1114:Mdn1	UTSW	4	32746568	critical splice donor site	probably null
R1137:Mdn1	UTSW	4	32694511	missense	probably damaging	1.00
R1185:Mdn1	UTSW	4	32735576	missense	possibly damaging	0.94
R1185:Mdn1	UTSW	4	32735576	missense	possibly damaging	0.94
R1185:Mdn1	UTSW	4	32735576	missense	possibly damaging	0.94
R1257:Mdn1	UTSW	4	32667089	critical splice acceptor site	probably null
R1356:Mdn1	UTSW	4	32700334	splice site	probably benign
R1466:Mdn1	UTSW	4	32730788	missense	probably benign	0.28
R1466:Mdn1	UTSW	4	32730788	missense	probably benign	0.28
R1518:Mdn1	UTSW	4	32739977	missense	probably damaging	1.00
R1569:Mdn1	UTSW	4	32723501	missense	probably null	0.10
R1574:Mdn1	UTSW	4	32722315	missense	probably benign
R1574:Mdn1	UTSW	4	32722315	missense	probably benign
R1591:Mdn1	UTSW	4	32700092	missense	possibly damaging	0.65
R1678:Mdn1	UTSW	4	32663050	missense	probably damaging	0.99
R1696:Mdn1	UTSW	4	32700417	missense	possibly damaging	0.91
R1707:Mdn1	UTSW	4	32693504	missense	probably damaging	1.00
R1749:Mdn1	UTSW	4	32773952	missense	probably damaging	1.00
R1780:Mdn1	UTSW	4	32700103	missense	probably damaging	1.00
R1833:Mdn1	UTSW	4	32720761	missense	probably damaging	0.97
R1858:Mdn1	UTSW	4	32730881	missense	probably benign	0.17
R1870:Mdn1	UTSW	4	32763339	missense	probably damaging	1.00
R1887:Mdn1	UTSW	4	32742540	missense	probably damaging	1.00
R1909:Mdn1	UTSW	4	32760839	small deletion	probably benign
R2075:Mdn1	UTSW	4	32716058	missense	probably benign	0.03
R2103:Mdn1	UTSW	4	32738712	missense	possibly damaging	0.75
R2104:Mdn1	UTSW	4	32743843	splice site	probably null
R2110:Mdn1	UTSW	4	32700409	missense	probably damaging	1.00
R2111:Mdn1	UTSW	4	32700409	missense	probably damaging	1.00
R2206:Mdn1	UTSW	4	32716271	missense	possibly damaging	0.71
R2221:Mdn1	UTSW	4	32763306	missense	probably benign	0.37
R2240:Mdn1	UTSW	4	32765701	missense	possibly damaging	0.90
R2351:Mdn1	UTSW	4	32750010	missense	probably benign	0.21
R2421:Mdn1	UTSW	4	32723621	missense	probably damaging	0.96
R3036:Mdn1	UTSW	4	32750013	missense	probably damaging	0.99
R3434:Mdn1	UTSW	4	32733726	critical splice donor site	probably null
R3435:Mdn1	UTSW	4	32733726	critical splice donor site	probably null
R3783:Mdn1	UTSW	4	32720818	missense	probably benign	0.01
R3811:Mdn1	UTSW	4	32693506	nonsense	probably null
R3973:Mdn1	UTSW	4	32722363	missense	probably benign	0.00
R4154:Mdn1	UTSW	4	32707475	missense	probably damaging	0.96
R4372:Mdn1	UTSW	4	32743809	missense	probably benign	0.03
R4393:Mdn1	UTSW	4	32754482	missense	possibly damaging	0.48
R4438:Mdn1	UTSW	4	32704635	missense	probably damaging	1.00
R4471:Mdn1	UTSW	4	32668860	missense	probably benign	0.00
R4509:Mdn1	UTSW	4	32715883	missense	probably damaging	1.00
R4538:Mdn1	UTSW	4	32722334	missense	probably damaging	1.00
R4557:Mdn1	UTSW	4	32754437	missense	probably damaging	1.00
R4570:Mdn1	UTSW	4	32741812	missense	probably damaging	1.00
R4591:Mdn1	UTSW	4	32707636	missense	probably damaging	1.00
R4658:Mdn1	UTSW	4	32730749	splice site	probably null
R4667:Mdn1	UTSW	4	32679572	missense	probably damaging	1.00
R4684:Mdn1	UTSW	4	32666430	missense	probably damaging	1.00
R4778:Mdn1	UTSW	4	32683583	nonsense	probably null
R4807:Mdn1	UTSW	4	32685651	splice site	probably null
R4923:Mdn1	UTSW	4	32671608	missense	possibly damaging	0.89
R4951:Mdn1	UTSW	4	32707459	missense	probably damaging	1.00
R4963:Mdn1	UTSW	4	32756512	missense	probably benign	0.00
R4971:Mdn1	UTSW	4	32739827	missense	probably damaging	1.00
R4973:Mdn1	UTSW	4	32734418	missense	probably benign	0.01
R5122:Mdn1	UTSW	4	32670593	missense	probably damaging	1.00
R5159:Mdn1	UTSW	4	32774008	missense	possibly damaging	0.93
R5164:Mdn1	UTSW	4	32759011	intron	probably null
R5215:Mdn1	UTSW	4	32741418	missense	possibly damaging	0.78
R5217:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5219:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5365:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5366:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5368:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5445:Mdn1	UTSW	4	32723690	missense	probably damaging	0.98
R5462:Mdn1	UTSW	4	32720897	missense	probably benign
R5522:Mdn1	UTSW	4	32685783	missense	probably damaging	1.00
R5525:Mdn1	UTSW	4	32767961	missense	possibly damaging	0.73
R5578:Mdn1	UTSW	4	32728167	missense	probably benign	0.04
R5605:Mdn1	UTSW	4	32765664	missense	probably benign
R5621:Mdn1	UTSW	4	32716371	missense	possibly damaging	0.46
R5636:Mdn1	UTSW	4	32695480	missense	probably damaging	1.00
R5650:Mdn1	UTSW	4	32667467	splice site	probably null
R5780:Mdn1	UTSW	4	32722950	missense	probably benign	0.02
R5838:Mdn1	UTSW	4	32754547	missense	probably damaging	0.99
R5857:Mdn1	UTSW	4	32670646	missense	probably benign	0.09
R5895:Mdn1	UTSW	4	32695400	missense	probably damaging	1.00
R5943:Mdn1	UTSW	4	32678330	missense	probably damaging	1.00
R6008:Mdn1	UTSW	4	32741073	missense	probably damaging	1.00
R6013:Mdn1	UTSW	4	32715713	missense	probably damaging	1.00
R6075:Mdn1	UTSW	4	32689581	missense	possibly damaging	0.48
R6151:Mdn1	UTSW	4	32684735	missense	probably damaging	1.00
R6163:Mdn1	UTSW	4	32716040	missense	probably damaging	1.00
R6181:Mdn1	UTSW	4	32715953	missense	probably damaging	1.00
R6211:Mdn1	UTSW	4	32696269	missense	probably benign	0.12
R6249:Mdn1	UTSW	4	32708484	missense	possibly damaging	0.85
R6251:Mdn1	UTSW	4	32748590	missense	probably benign	0.13
R6253:Mdn1	UTSW	4	32749593	missense	probably benign	0.25
R6273:Mdn1	UTSW	4	32715979	missense	probably benign	0.01
R6297:Mdn1	UTSW	4	32730054	nonsense	probably null
R6384:Mdn1	UTSW	4	32670607	missense	probably damaging	1.00
R6463:Mdn1	UTSW	4	32773308	missense	probably damaging	1.00
R6528:Mdn1	UTSW	4	32713780	missense	probably damaging	1.00
R6688:Mdn1	UTSW	4	32774041	missense	possibly damaging	0.74
R6762:Mdn1	UTSW	4	32676786	missense	possibly damaging	0.50
R6794:Mdn1	UTSW	4	32741893	missense	probably damaging	1.00
R6894:Mdn1	UTSW	4	32748614	missense	possibly damaging	0.75
R6935:Mdn1	UTSW	4	32774041	missense	possibly damaging	0.74
R6980:Mdn1	UTSW	4	32726942	critical splice donor site	probably null
R6995:Mdn1	UTSW	4	32733374	missense	probably benign	0.03
R7048:Mdn1	UTSW	4	32767969	missense	probably benign	0.00
R7082:Mdn1	UTSW	4	32762341	missense	probably benign
R7158:Mdn1	UTSW	4	32725121	missense	probably benign	0.09
R7166:Mdn1	UTSW	4	32746446	missense	probably damaging	1.00
R7168:Mdn1	UTSW	4	32719184	missense	probably damaging	1.00
R7175:Mdn1	UTSW	4	32694634	missense	probably damaging	1.00
R7195:Mdn1	UTSW	4	32701823	missense	probably damaging	1.00
R7250:Mdn1	UTSW	4	32695427	missense	probably damaging	1.00
R7274:Mdn1	UTSW	4	32725944	missense	probably benign	0.12
R7330:Mdn1	UTSW	4	32723685	missense	probably benign	0.16
R7363:Mdn1	UTSW	4	32691729	missense	probably damaging	0.99
R7369:Mdn1	UTSW	4	32773375	missense	probably damaging	0.99
R7452:Mdn1	UTSW	4	32739030	missense	possibly damaging	0.87
R7523:Mdn1	UTSW	4	32667270	critical splice acceptor site	probably null
R7594:Mdn1	UTSW	4	32696359	missense	probably benign	0.27
R7605:Mdn1	UTSW	4	32694599	missense	probably damaging	1.00
R7661:Mdn1	UTSW	4	32691229	missense	probably benign	0.08
R7689:Mdn1	UTSW	4	32739912	missense	probably damaging	1.00
R7699:Mdn1	UTSW	4	32741344	missense	probably damaging	1.00
R7700:Mdn1	UTSW	4	32741344	missense	probably damaging	1.00
R7714:Mdn1	UTSW	4	32722360	missense	possibly damaging	0.75
R7718:Mdn1	UTSW	4	32718420	missense	probably damaging	1.00
R7762:Mdn1	UTSW	4	32734421	missense	probably benign
R7787:Mdn1	UTSW	4	32741794	missense	probably damaging	1.00
R8111:Mdn1	UTSW	4	32674003	missense	possibly damaging	0.81
X0066:Mdn1	UTSW	4	32739030	missense	probably damaging	1.00
Z1176:Mdn1	UTSW	4	32667102	missense	probably benign	0.01
Z1176:Mdn1	UTSW	4	32668944	missense	probably damaging	1.00
Z1176:Mdn1	UTSW	4	32696244	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCTGACAGGTTTCTGGAGC -3'
(R):5'- CAGGGGAAGTTGCTAGTCAG -3'

Sequencing Primer
(F):5'- ACAGGTTTCTGGAGCTATATGTCAC -3'
(R):5'- TCAGCAGTGAAGAACATACACTTAG -3'

Posted On

2019-06-07