Incidental Mutation 'PIT4486001:Rab15'
ID556122
Institutional Source Beutler Lab
Gene Symbol Rab15
Ensembl Gene ENSMUSG00000021062
Gene NameRAB15, member RAS oncogene family
Synonyms
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #PIT4486001 (G1)
Quality Score225.009
Status Not validated
Chromosome12
Chromosomal Location76797960-76822908 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 76801942 bp
ZygosityHeterozygous
Amino Acid Change Lysine to Stop codon at position 122 (K122*)
Ref Sequence ENSEMBL: ENSMUSP00000021459 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000021459] [ENSMUST00000118604] [ENSMUST00000121716] [ENSMUST00000122419] [ENSMUST00000125842] [ENSMUST00000137826] [ENSMUST00000141622] [ENSMUST00000154765]
Predicted Effect probably null
Transcript: ENSMUST00000021459
AA Change: K122*
SMART Domains Protein: ENSMUSP00000021459
Gene: ENSMUSG00000021062
AA Change: K122*

DomainStartEndE-ValueType
RAB 9 172 2.04e-102 SMART
low complexity region 187 197 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000118604
AA Change: K76*
SMART Domains Protein: ENSMUSP00000112789
Gene: ENSMUSG00000021062
AA Change: K76*

DomainStartEndE-ValueType
RAB 1 126 1.21e-54 SMART
low complexity region 141 151 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000121716
AA Change: K76*
SMART Domains Protein: ENSMUSP00000113299
Gene: ENSMUSG00000021062
AA Change: K76*

DomainStartEndE-ValueType
RAB 1 126 1.21e-54 SMART
low complexity region 141 151 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000122419
AA Change: K93*
SMART Domains Protein: ENSMUSP00000112457
Gene: ENSMUSG00000021062
AA Change: K93*

DomainStartEndE-ValueType
RAB 14 143 3.04e-60 SMART
low complexity region 158 168 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000125842
SMART Domains Protein: ENSMUSP00000116906
Gene: ENSMUSG00000033373

DomainStartEndE-ValueType
Pfam:Churchill 1 65 2.4e-31 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000137826
SMART Domains Protein: ENSMUSP00000120713
Gene: ENSMUSG00000033373

DomainStartEndE-ValueType
Pfam:Churchill 1 92 1.9e-42 PFAM
Pfam:Prenyltrans 157 198 5.1e-16 PFAM
Pfam:Prenyltrans 206 249 2.8e-13 PFAM
Pfam:Prenyltrans 255 297 1e-14 PFAM
Pfam:Prenyltrans 302 346 1.6e-12 PFAM
Pfam:Prenyltrans 364 408 1.4e-11 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000141622
AA Change: K76*
SMART Domains Protein: ENSMUSP00000115720
Gene: ENSMUSG00000021062
AA Change: K76*

DomainStartEndE-ValueType
Pfam:Miro 1 78 1.4e-11 PFAM
Pfam:Arf 1 113 6.9e-7 PFAM
Pfam:Ras 1 114 3.1e-42 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000154765
AA Change: K76*
SMART Domains Protein: ENSMUSP00000122067
Gene: ENSMUSG00000021062
AA Change: K76*

DomainStartEndE-ValueType
RAB 1 126 1.21e-54 SMART
Coding Region Coverage
  • 1x: 93.0%
  • 3x: 90.5%
  • 10x: 84.1%
  • 20x: 70.1%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700018F24Rik T C 5: 145,044,104 S108P probably damaging Het
4930548H24Rik T A 5: 31,487,743 I280K probably damaging Het
4931408C20Rik G A 1: 26,685,329 P257S probably damaging Het
Abhd16b A T 2: 181,493,959 Q218L probably benign Het
Abhd3 T A 18: 10,645,233 I354F probably benign Het
Abt1 T C 13: 23,423,681 Y51C possibly damaging Het
Actl9 T A 17: 33,434,198 Y411N possibly damaging Het
Ano4 A G 10: 88,993,029 V516A probably damaging Het
Bptf A T 11: 107,054,788 S2542T probably damaging Het
Card11 C T 5: 140,876,408 V1045M probably damaging Het
Cd300ld2 CGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGTCAGAACTGTGGATGGCACAACTGTGCATGGCAGAACTGTGGATGGCACAACTGTGGATGGCAGAACTGTGG CGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGGCAGAACTGTGGATGTCAGAACTGTGGATGTCAGAACTGTGGATGGCACAACTGTGCATGGCAGAACTGTGGATGGCACAACTGTGGATGGCAGAACTGTGG 11: 115,012,431 probably benign Het
Cdh3 A G 8: 106,541,490 K386E possibly damaging Het
Cks1b C A 3: 89,416,314 Q49H probably damaging Het
Clpb A T 7: 101,663,932 D41V probably benign Het
Cyp3a11 A T 5: 145,860,492 M359K probably damaging Het
Cyp3a13 A T 5: 137,909,966 I207N probably benign Het
Dennd4c T A 4: 86,799,464 L566* probably null Het
Dhtkd1 A T 2: 5,899,995 D859E probably benign Het
Efcab6 T C 15: 83,973,313 D295G probably benign Het
Fcgbp A G 7: 28,075,273 T91A possibly damaging Het
Gm11569 GCAGCTGGGCCTGCAGCAGCTGGAAATGCAGCAGCTAGGACGGCAACA GCA 11: 99,798,665 probably benign Het
Gm884 A T 11: 103,618,201 H980Q unknown Het
Gsdma3 A G 11: 98,638,054 K454E unknown Het
Herc1 T A 9: 66,372,389 I193N probably damaging Het
Kdm5b T A 1: 134,628,685 L1370Q probably damaging Het
Map4 T G 9: 110,072,614 V965G probably damaging Het
Mkrn2os T C 6: 115,585,483 D173G probably benign Het
Ndfip2 A G 14: 105,294,866 D232G probably damaging Het
Nipal2 C T 15: 34,584,729 G231D probably damaging Het
Notch3 A T 17: 32,154,763 N490K probably damaging Het
Olfr150 T A 9: 39,737,239 C141* probably null Het
Olfr493 A G 7: 108,346,322 S220P possibly damaging Het
Prkar2a T C 9: 108,733,127 L185S probably damaging Het
Ptpn9 T G 9: 57,061,003 N542K probably damaging Het
Pus10 G A 11: 23,712,326 probably null Het
Pyroxd2 A G 19: 42,740,389 S191P probably benign Het
Rara A G 11: 98,973,495 N416S possibly damaging Het
Rims2 T C 15: 39,476,520 V870A possibly damaging Het
Sec16a T C 2: 26,425,773 T293A Het
Slc26a3 G A 12: 31,470,950 D718N probably benign Het
Slc44a5 G A 3: 154,259,022 V520I possibly damaging Het
Tgfb2 A T 1: 186,690,727 Y142N probably benign Het
Tgfbi A T 13: 56,629,794 I364F probably damaging Het
Tmem144 A C 3: 79,826,867 D176E probably benign Het
Tns4 A T 11: 99,071,335 L612Q probably damaging Het
Toe1 A G 4: 116,806,495 L76S probably damaging Het
Trank1 T C 9: 111,390,107 F1971L probably damaging Het
Tsen54 G T 11: 115,822,596 V481F probably damaging Het
Uimc1 A G 13: 55,075,568 L297P probably damaging Het
Wnt8a T C 18: 34,547,583 Y334H probably damaging Het
Zfp281 A G 1: 136,627,003 D573G possibly damaging Het
Other mutations in Rab15
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02664:Rab15 APN 12 76804451 missense possibly damaging 0.91
R4594:Rab15 UTSW 12 76800671 intron probably benign
R5009:Rab15 UTSW 12 76800567 missense probably damaging 1.00
R5959:Rab15 UTSW 12 76822269 missense probably damaging 1.00
R5972:Rab15 UTSW 12 76800603 missense probably damaging 0.99
R6878:Rab15 UTSW 12 76804483 missense probably benign 0.16
R7592:Rab15 UTSW 12 76804449 missense probably damaging 1.00
R7764:Rab15 UTSW 12 76804441 critical splice donor site probably null
R7861:Rab15 UTSW 12 76803129 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCAGCACCACCCTGTTTAG -3'
(R):5'- TAGGGGCTCCTGTACAATGG -3'

Sequencing Primer
(F):5'- TTGCCTGAGAGCGCTTAC -3'
(R):5'- CCTGTACAATGGGAGCCTGTTC -3'
Posted On2019-06-07