Incidental Mutation 'PIT4494001:Hyal4'
| ID |
556148 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Hyal4
|
| Ensembl Gene |
ENSMUSG00000029680 |
| Gene Name |
hyaluronoglucosaminidase 4 |
| Synonyms |
4632428M18Rik |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
PIT4494001 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
6 |
| Chromosomal Location |
24748366-24766518 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 24755833 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 17
(V17A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000031691
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000031691]
|
| AlphaFold |
Q05A56 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000031691
AA Change: V17A
PolyPhen 2
Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000031691
Gene: ENSMUSG00000029680
AA Change: V17A
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
23 |
36 |
N/A |
INTRINSIC |
|
Pfam:Glyco_hydro_56
|
41 |
373 |
3e-137 |
PFAM |
|
EGF
|
375 |
447 |
2.81e0 |
SMART |
|
low complexity region
|
453 |
473 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 93.8%
- 3x: 91.1%
- 10x: 85.6%
- 20x: 73.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which is similar in structure to hyaluronidases. Hyaluronidases intracellularly degrade hyaluronan, one of the major glycosaminoglycans of the extracellular matrix. Hyaluronan is thought to be involved in cell proliferation, migration and differentiation. However, this protein has not yet been shown to have hyaluronidase activity. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933427I04Rik |
T |
C |
4: 123,754,698 (GRCm39) |
I204T |
probably benign |
Het |
| Acnat2 |
T |
C |
4: 49,383,133 (GRCm39) |
E140G |
probably benign |
Het |
| Arhgef10l |
T |
C |
4: 140,292,522 (GRCm39) |
E413G |
probably damaging |
Het |
| Atg9a |
A |
T |
1: 75,164,597 (GRCm39) |
C122* |
probably null |
Het |
| Birc6 |
T |
C |
17: 74,933,975 (GRCm39) |
Y2544H |
probably damaging |
Het |
| C3 |
G |
A |
17: 57,516,263 (GRCm39) |
T1383I |
probably benign |
Het |
| Cd2ap |
C |
T |
17: 43,163,258 (GRCm39) |
|
probably null |
Het |
| Cdhr1 |
T |
C |
14: 36,804,813 (GRCm39) |
T466A |
probably benign |
Het |
| Cdhr2 |
G |
T |
13: 54,866,255 (GRCm39) |
|
probably null |
Het |
| Eppk1 |
T |
A |
15: 75,990,272 (GRCm39) |
Q2203L |
probably benign |
Het |
| F10 |
T |
C |
8: 13,103,423 (GRCm39) |
L281P |
probably damaging |
Het |
| Farp2 |
A |
G |
1: 93,545,316 (GRCm39) |
T825A |
probably damaging |
Het |
| Fbxw27 |
T |
C |
9: 109,601,178 (GRCm39) |
E314G |
probably benign |
Het |
| Foxred1 |
T |
C |
9: 35,120,355 (GRCm39) |
E173G |
possibly damaging |
Het |
| Gm4847 |
T |
C |
1: 166,467,587 (GRCm39) |
E203G |
probably damaging |
Het |
| Gpat2 |
G |
A |
2: 127,275,800 (GRCm39) |
R526H |
probably benign |
Het |
| Grin2a |
T |
C |
16: 9,402,960 (GRCm39) |
Y842C |
probably damaging |
Het |
| Igkv4-68 |
T |
C |
6: 69,282,091 (GRCm39) |
T27A |
probably damaging |
Het |
| Loxhd1 |
A |
T |
18: 77,529,464 (GRCm39) |
N2036Y |
probably damaging |
Het |
| Lrp5 |
T |
C |
19: 3,660,091 (GRCm39) |
Y991C |
probably damaging |
Het |
| Lrp6 |
T |
C |
6: 134,456,741 (GRCm39) |
Y841C |
probably damaging |
Het |
| Medag |
A |
G |
5: 149,350,765 (GRCm39) |
Y194C |
probably damaging |
Het |
| Mynn |
C |
T |
3: 30,661,871 (GRCm39) |
R318* |
probably null |
Het |
| Notch1 |
C |
T |
2: 26,356,485 (GRCm39) |
V1711M |
probably damaging |
Het |
| Nsun2 |
T |
C |
13: 69,766,311 (GRCm39) |
|
probably null |
Het |
| Pex7 |
A |
G |
10: 19,770,469 (GRCm39) |
|
probably null |
Het |
| Pkd1 |
A |
G |
17: 24,796,775 (GRCm39) |
T2417A |
probably damaging |
Het |
| Pknox2 |
A |
G |
9: 36,865,987 (GRCm39) |
|
probably null |
Het |
| Plekha4 |
T |
C |
7: 45,197,503 (GRCm39) |
S522P |
probably damaging |
Het |
| Ptcd1 |
A |
T |
5: 145,092,168 (GRCm39) |
S310R |
probably benign |
Het |
| Rap2a |
A |
G |
14: 120,716,319 (GRCm39) |
T61A |
possibly damaging |
Het |
| Ryr3 |
G |
T |
2: 112,672,221 (GRCm39) |
L1437M |
probably damaging |
Het |
| Slc25a40 |
T |
G |
5: 8,490,737 (GRCm39) |
I95S |
probably damaging |
Het |
| Srbd1 |
C |
T |
17: 86,449,787 (GRCm39) |
|
probably null |
Het |
| Tox4 |
C |
T |
14: 52,529,260 (GRCm39) |
T407I |
possibly damaging |
Het |
| Vmn1r8 |
A |
G |
6: 57,013,712 (GRCm39) |
I254M |
probably benign |
Het |
| Wiz |
G |
A |
17: 32,580,905 (GRCm39) |
A182V |
probably damaging |
Het |
| Zfp60 |
T |
C |
7: 27,448,126 (GRCm39) |
S265P |
probably damaging |
Het |
|
| Other mutations in Hyal4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01420:Hyal4
|
APN |
6 |
24,755,871 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL01791:Hyal4
|
APN |
6 |
24,763,894 (GRCm39) |
splice site |
probably benign |
|
|
IGL02434:Hyal4
|
APN |
6 |
24,763,857 (GRCm39) |
nonsense |
probably null |
|
|
IGL02523:Hyal4
|
APN |
6 |
24,765,968 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL03114:Hyal4
|
APN |
6 |
24,755,964 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02835:Hyal4
|
UTSW |
6 |
24,765,714 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0196:Hyal4
|
UTSW |
6 |
24,756,220 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0323:Hyal4
|
UTSW |
6 |
24,756,193 (GRCm39) |
missense |
probably benign |
0.30 |
|
R0398:Hyal4
|
UTSW |
6 |
24,756,670 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0946:Hyal4
|
UTSW |
6 |
24,755,912 (GRCm39) |
nonsense |
probably null |
|
|
R0961:Hyal4
|
UTSW |
6 |
24,755,745 (GRCm39) |
utr 5 prime |
probably benign |
|
|
R1906:Hyal4
|
UTSW |
6 |
24,756,110 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1998:Hyal4
|
UTSW |
6 |
24,756,310 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2085:Hyal4
|
UTSW |
6 |
24,755,749 (GRCm39) |
start gained |
probably benign |
|
|
R2483:Hyal4
|
UTSW |
6 |
24,765,737 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R3622:Hyal4
|
UTSW |
6 |
24,765,737 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R3623:Hyal4
|
UTSW |
6 |
24,765,737 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R3624:Hyal4
|
UTSW |
6 |
24,765,737 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R3712:Hyal4
|
UTSW |
6 |
24,756,513 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4031:Hyal4
|
UTSW |
6 |
24,756,223 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5762:Hyal4
|
UTSW |
6 |
24,765,861 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6177:Hyal4
|
UTSW |
6 |
24,766,089 (GRCm39) |
nonsense |
probably null |
|
|
R6442:Hyal4
|
UTSW |
6 |
24,765,849 (GRCm39) |
missense |
probably benign |
0.08 |
|
R6494:Hyal4
|
UTSW |
6 |
24,765,745 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R6901:Hyal4
|
UTSW |
6 |
24,756,190 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7565:Hyal4
|
UTSW |
6 |
24,765,933 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R7973:Hyal4
|
UTSW |
6 |
24,755,785 (GRCm39) |
start codon destroyed |
probably null |
0.99 |
|
R7977:Hyal4
|
UTSW |
6 |
24,763,865 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7987:Hyal4
|
UTSW |
6 |
24,763,865 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8020:Hyal4
|
UTSW |
6 |
24,755,995 (GRCm39) |
missense |
probably benign |
0.14 |
|
R8676:Hyal4
|
UTSW |
6 |
24,755,826 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9331:Hyal4
|
UTSW |
6 |
24,765,866 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9573:Hyal4
|
UTSW |
6 |
24,756,508 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
Z1176:Hyal4
|
UTSW |
6 |
24,756,627 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCGAGTAGAAACCTGATCATGACAC -3'
(R):5'- GGGCTTCCAACCATCTGAAAC -3'
Sequencing Primer
(F):5'- ACCTGATCATGACACTTGATTTTAC -3'
(R):5'- TCCAACCATCTGAAACACTTTTAAG -3'
|
| Posted On |
2019-06-07 |
Incidental Mutation