Incidental Mutation 'PIT4531001:Hoxc12'
ID 556471
Institutional Source Beutler Lab
Gene Symbol Hoxc12
Ensembl Gene ENSMUSG00000050328
Gene Name homeobox C12
Synonyms Hox-3.8
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # PIT4531001 (G1)
Quality Score 195.009
Status Not validated
Chromosome 15
Chromosomal Location 102845261-102847044 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 102846855 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Tryptophan at position 249 (L249W)
Ref Sequence ENSEMBL: ENSMUSP00000051003 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055562]
AlphaFold Q8K5B8
Predicted Effect probably damaging
Transcript: ENSMUST00000055562
AA Change: L249W

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000051003
Gene: ENSMUSG00000050328
AA Change: L249W

DomainStartEndE-ValueType
low complexity region 101 129 N/A INTRINSIC
low complexity region 144 173 N/A INTRINSIC
HOX 212 274 1.05e-20 SMART
Coding Region Coverage
  • 1x: 93.0%
  • 3x: 90.6%
  • 10x: 84.3%
  • 20x: 70.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adpgk T G 9: 59,217,600 (GRCm39) D204E probably damaging Het
Aqr C A 2: 113,961,215 (GRCm39) V682L possibly damaging Het
Bmper A T 9: 23,136,113 (GRCm39) N65Y possibly damaging Het
Calb1 T C 4: 15,900,925 (GRCm39) L171P probably damaging Het
Card11 T C 5: 140,892,415 (GRCm39) M217V probably damaging Het
Col11a2 A G 17: 34,265,412 (GRCm39) probably null Het
Dpm1 T C 2: 168,052,472 (GRCm39) T255A probably benign Het
Efhb A G 17: 53,752,803 (GRCm39) Y440H probably damaging Het
Elp2 T C 18: 24,737,170 (GRCm39) V40A probably damaging Het
Far2 A T 6: 148,076,629 (GRCm39) N491Y possibly damaging Het
Frem1 T A 4: 82,868,517 (GRCm39) H1488L probably benign Het
Frrs1l C A 4: 56,990,144 (GRCm39) R43L unknown Het
Galnt3 G A 2: 65,937,432 (GRCm39) R93C probably benign Het
Gm8225 A G 17: 26,762,363 (GRCm39) T185A possibly damaging Het
H2-Q1 T C 17: 35,539,892 (GRCm39) F54L probably benign Het
H2-Q1 A T 17: 35,540,055 (GRCm39) Q108L probably damaging Het
Lrrc75b A T 10: 75,393,099 (GRCm39) H83Q probably damaging Het
Muc4 A T 16: 32,576,391 (GRCm39) T1964S unknown Het
Nob1 T C 8: 108,145,049 (GRCm39) D142G probably benign Het
Or2y1d T C 11: 49,321,753 (GRCm39) V150A probably benign Het
Or4p19 A T 2: 88,242,104 (GRCm39) H299Q probably benign Het
Or4p22 A T 2: 88,317,601 (GRCm39) Y175F possibly damaging Het
Or5b24 G A 19: 12,912,641 (GRCm39) D180N probably damaging Het
Or5d16 A G 2: 87,773,571 (GRCm39) Y134H probably damaging Het
Patj A T 4: 98,329,327 (GRCm39) N527I probably damaging Het
Pik3c2g A G 6: 139,805,096 (GRCm39) I543V Het
Ppp1r2 A T 16: 31,077,279 (GRCm39) N150K probably damaging Het
Prl7d1 A T 13: 27,894,161 (GRCm39) L135Q probably damaging Het
Ralgds G T 2: 28,435,226 (GRCm39) E461* probably null Het
Ramac C T 7: 81,417,327 (GRCm39) P9L possibly damaging Het
Rasa3 T A 8: 13,655,887 (GRCm39) H116L probably benign Het
Sec24d C T 3: 123,136,827 (GRCm39) P520L probably damaging Het
Sfmbt1 T G 14: 30,518,283 (GRCm39) S376A probably benign Het
Sspo A G 6: 48,458,173 (GRCm39) T3290A probably benign Het
Stk25 G A 1: 93,552,346 (GRCm39) P345S probably benign Het
Sycp2l A G 13: 41,300,148 (GRCm39) E454G probably null Het
Tecpr1 T C 5: 144,150,885 (GRCm39) K308E probably damaging Het
Thtpa C T 14: 55,332,962 (GRCm39) P16S probably damaging Het
Trim65 T A 11: 116,018,535 (GRCm39) I247F possibly damaging Het
Trpc6 T G 9: 8,610,149 (GRCm39) Y206D probably benign Het
Ttn G A 2: 76,703,307 (GRCm39) T9357I unknown Het
Ugt2b1 C A 5: 87,074,342 (GRCm39) A6S probably benign Het
Vmn1r175 A G 7: 23,508,603 (GRCm39) V8A possibly damaging Het
Vps13b T A 15: 35,878,971 (GRCm39) I2990N probably damaging Het
Xirp2 G A 2: 67,345,826 (GRCm39) R2689Q possibly damaging Het
Zfp831 T A 2: 174,488,516 (GRCm39) Y1064N possibly damaging Het
Other mutations in Hoxc12
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01401:Hoxc12 APN 15 102,845,755 (GRCm39) missense probably benign
IGL01978:Hoxc12 APN 15 102,845,299 (GRCm39) missense probably damaging 1.00
R0724:Hoxc12 UTSW 15 102,845,490 (GRCm39) missense probably damaging 0.99
R3748:Hoxc12 UTSW 15 102,846,813 (GRCm39) missense probably damaging 1.00
R4448:Hoxc12 UTSW 15 102,846,911 (GRCm39) missense probably damaging 1.00
R5151:Hoxc12 UTSW 15 102,846,881 (GRCm39) missense probably damaging 1.00
R6376:Hoxc12 UTSW 15 102,845,524 (GRCm39) missense possibly damaging 0.77
R7034:Hoxc12 UTSW 15 102,846,795 (GRCm39) missense probably damaging 0.99
R7036:Hoxc12 UTSW 15 102,846,795 (GRCm39) missense probably damaging 0.99
R7096:Hoxc12 UTSW 15 102,845,473 (GRCm39) missense possibly damaging 0.79
R7295:Hoxc12 UTSW 15 102,846,810 (GRCm39) missense probably damaging 0.97
R8789:Hoxc12 UTSW 15 102,846,732 (GRCm39) missense probably benign 0.00
X0028:Hoxc12 UTSW 15 102,845,893 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- AACATTTTCAGGATGAGAAGCG -3'
(R):5'- GCGTTGTAAGCGGGACTATG -3'

Sequencing Primer
(F):5'- AGGGCACTGAGCTAGTCAC -3'
(R):5'- ACTATGTCCCAGGCTGCG -3'
Posted On 2019-06-07