Mutagenetix > Incidental Mutations

Incidental Mutation 'PIT4585001:Smu1'

556589

Institutional Source

Beutler Lab

Gene Symbol

Smu1

Ensembl Gene

ENSMUSG00000028409

Gene Name

smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)

Synonyms

2610203K23Rik, 2600001O03Rik, SMU-1

Accession Numbers

Is this an essential gene?

Probably essential (E-score: 0.959) question?

Stock #

PIT4585001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

40736542-40757923 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 40739623 bp

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 396 (T396A)

Ref Sequence

ENSEMBL: ENSMUSP00000030117 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030117] [ENSMUST00000030118] [ENSMUST00000164233]

Predicted Effect

probably benign
Transcript: ENSMUST00000030117
AA Change: T396A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000030117
Gene: ENSMUSG00000028409
AA Change: T396A

Domain	Start	End	E-Value	Type
LisH	6	38	9.95e-7	SMART
CTLH	40	92	2.32e-7	SMART
WD40	202	242	9.02e-7	SMART
WD40	253	292	3.81e-5	SMART
WD40	295	335	5.26e-8	SMART
WD40	338	377	4.4e-10	SMART
WD40	380	426	1.03e1	SMART
WD40	428	470	2.97e0	SMART
WD40	473	512	9.52e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000030118

SMART Domains

Protein: ENSMUSP00000030118
Gene: ENSMUSG00000028410

Domain	Start	End	E-Value	Type
DnaJ	5	60	4.2e-30	SMART
low complexity region	66	82	N/A	INTRINSIC
low complexity region	93	104	N/A	INTRINSIC
Pfam:DnaJ_CXXCXGXG	134	200	5.7e-16	PFAM
Pfam:CTDII	257	340	1.5e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164233

SMART Domains

Protein: ENSMUSP00000129730
Gene: ENSMUSG00000028410

Domain	Start	End	E-Value	Type
DnaJ	5	60	4.2e-30	SMART
low complexity region	66	82	N/A	INTRINSIC
low complexity region	93	104	N/A	INTRINSIC
Pfam:DnaJ_C	107	329	5.1e-35	PFAM
Pfam:DnaJ_CXXCXGXG	134	200	6e-17	PFAM

Coding Region Coverage

1x: 93.6%
3x: 91.2%
10x: 86.5%
20x: 76.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aurka	T	C	2: 172,357,197	M318V	probably benign	Het
Cacna2d1	T	A	5: 16,326,344	D560E	probably damaging	Het
Ccdc148	T	A	2: 58,982,976	T202S	probably benign	Het
Ccdc155	C	T	7: 45,200,271	G76D	probably benign	Het
Cdc42bpb	T	C	12: 111,304,978	D1149G	probably damaging	Het
Clasp1	T	A	1: 118,462,555	N156K	probably damaging	Het
Cox18	G	A	5: 90,217,575	T255I	possibly damaging	Het
Cse1l	A	G	2: 166,941,474	T783A	probably damaging	Het
Dnajc16	T	C	4: 141,764,685	Y609C	probably damaging	Het
Doc2g	A	G	19: 4,006,630	T339A	probably benign	Het
Eif5a	T	C	11: 69,918,070		probably benign	Het
Epha3	A	G	16: 63,566,577		probably null	Het
Esco1	A	T	18: 10,594,355	C310*	probably null	Het
Fam208b	G	A	13: 3,574,979	A1657V	possibly damaging	Het
Fam222a	A	G	5: 114,611,040	Y99C	probably damaging	Het
Fzd2	T	C	11: 102,605,747	L339P	probably damaging	Het
Gfral	A	T	9: 76,197,294	N145K	probably damaging	Het
Gga1	T	A	15: 78,893,790	N618K	probably benign	Het
Gpatch3	T	A	4: 133,583,086	H447Q	probably damaging	Het
Gpn1	A	T	5: 31,509,403	R346*	probably null	Het
Gsg1	T	C	6: 135,237,560	E317G	probably benign	Het
Gsk3b	A	G	16: 38,184,454	N129S	probably damaging	Het
Hmg20b	G	T	10: 81,348,955	D94E	possibly damaging	Het
Klhdc9	T	A	1: 171,359,818	H204L	possibly damaging	Het
Klhl24	A	G	16: 20,106,888	I55M	probably benign	Het
Kmt2c	T	C	5: 25,315,106	D2002G	probably benign	Het
Lama4	A	G	10: 39,074,746	N1015S	probably damaging	Het
Lpp	T	C	16: 24,761,947	C263R	probably benign	Het
Lrp1b	T	C	2: 41,269,204	I1689V		Het
Mipep	C	A	14: 60,784,835	Q50K	probably benign	Het
Mx1	T	C	16: 97,456,254	D101G	probably benign	Het
Nabp2	C	G	10: 128,408,807	E37Q	possibly damaging	Het
Nme6	A	G	9: 109,842,036	I115V	possibly damaging	Het
Nup93	A	T	8: 94,243,727	T85S	probably benign	Het
Oit3	T	A	10: 59,431,013	I224F	possibly damaging	Het
Parp14	T	C	16: 35,858,605	K331R	probably benign	Het
Pls1	T	A	9: 95,761,390	T519S	probably benign	Het
Rcn3	A	G	7: 45,086,694	F197L	probably benign	Het
Rnf213	C	T	11: 119,458,392	T3773I		Het
Rprd1b	A	T	2: 158,047,957	I153L	probably benign	Het
Scel	A	G	14: 103,592,368	D462G	possibly damaging	Het
Sh3bp1	C	T	15: 78,910,076	S548L	possibly damaging	Het
Sim1	T	A	10: 50,984,188	Y715*	probably null	Het
Slc18a2	A	T	19: 59,293,861	Q500L	possibly damaging	Het
Slc5a8	T	G	10: 88,886,503	M66R	probably damaging	Het
Slco1a6	T	C	6: 142,109,520	T233A	probably damaging	Het
Tas2r104	T	C	6: 131,685,558	T63A	possibly damaging	Het
Top2a	C	T	11: 99,001,373	A1088T	probably benign	Het
Ucp1	T	C	8: 83,293,948	F129S	probably damaging	Het
Unc13b	T	A	4: 43,091,298	D41E	probably benign	Het
Usp10	T	G	8: 119,954,892	V696G	probably benign	Het
Xylt2	C	T	11: 94,666,240	V745M	probably damaging	Het
Zbtb49	A	T	5: 38,216,476	N41K	probably damaging	Het
Zfp109	T	A	7: 24,229,354	D218V	probably benign	Het
Zfp420	G	A	7: 29,876,005	R550Q	probably benign	Het

Other mutations in Smu1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02992:Smu1	APN	4	40739550	missense	probably damaging	0.97
IGL03271:Smu1	APN	4	40738408	missense	probably benign	0.11
IGL03329:Smu1	APN	4	40739568	missense	possibly damaging	0.81
R0172:Smu1	UTSW	4	40738439	missense	probably benign	0.00
R1109:Smu1	UTSW	4	40755722	missense	probably benign	0.12
R1552:Smu1	UTSW	4	40748570	missense	probably damaging	1.00
R1799:Smu1	UTSW	4	40745537	missense	probably damaging	1.00
R2093:Smu1	UTSW	4	40738438	missense	probably benign	0.12
R2143:Smu1	UTSW	4	40744073	missense	probably damaging	0.99
R3082:Smu1	UTSW	4	40745567	missense	probably damaging	1.00
R3083:Smu1	UTSW	4	40745567	missense	probably damaging	1.00
R3113:Smu1	UTSW	4	40748658	missense	probably benign	0.03
R3157:Smu1	UTSW	4	40754529	missense	possibly damaging	0.82
R3158:Smu1	UTSW	4	40754529	missense	possibly damaging	0.82
R3159:Smu1	UTSW	4	40754529	missense	possibly damaging	0.82
R3409:Smu1	UTSW	4	40752008	missense	probably benign
R3411:Smu1	UTSW	4	40752008	missense	probably benign
R4581:Smu1	UTSW	4	40737401	splice site	probably null
R5106:Smu1	UTSW	4	40743104	missense	possibly damaging	0.82
R7747:Smu1	UTSW	4	40748600	missense	probably benign	0.44

Predicted Primers

PCR Primer
(F):5'- ATGCATGTCTACAGATACACACAGC -3'
(R):5'- TCAAGCAGCTTTATTTGAGCC -3'

Sequencing Primer
(F):5'- AGCACTAACCAGCCCTTGTTTG -3'
(R):5'- GCAGCTTTATTTGAGCCAATTTAAC -3'

Posted On

2019-06-07