Incidental Mutation 'R0605:Sycp2l'
ID55673
Institutional Source Beutler Lab
Gene Symbol Sycp2l
Ensembl Gene ENSMUSG00000038651
Gene Namesynaptonemal complex protein 2-like
SynonymsEG621792, LOC218175
MMRRC Submission 038794-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.131) question?
Stock #R0605 (G1)
Quality Score178
Status Validated
Chromosome13
Chromosomal Location41114307-41174351 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 41143466 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Lysine at position 341 (M341K)
Ref Sequence ENSEMBL: ENSMUSP00000115127 (fasta)
Predicted Effect probably benign
Transcript: ENSMUST00000124093
AA Change: M341K

PolyPhen 2 Score 0.219 (Sensitivity: 0.91; Specificity: 0.88)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.6%
  • 20x: 95.4%
Validation Efficiency 100% (85/85)
MGI Phenotype PHENOTYPE: Female mice homozygous for a knock-out allele exhibit early reproductive senescence. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933406P04Rik G A 10: 20,311,227 probably benign Het
Adam28 A T 14: 68,606,600 probably benign Het
Adamts3 A G 5: 89,861,475 W110R possibly damaging Het
Add1 T C 5: 34,614,224 V342A possibly damaging Het
Aff3 A G 1: 38,209,987 S680P probably damaging Het
Ak9 T C 10: 41,345,139 Y322H probably damaging Het
Als2 A G 1: 59,168,414 L1528S probably benign Het
Ass1 A T 2: 31,514,819 N371Y probably damaging Het
Atp6v1a A C 16: 44,111,496 probably null Het
Bpi T C 2: 158,261,394 L103P probably damaging Het
Cd80 G A 16: 38,482,694 V168I probably benign Het
Cfh T C 1: 140,102,358 S926G probably damaging Het
Chrd A T 16: 20,735,439 T304S probably damaging Het
Chsy3 A G 18: 59,409,053 Y421C probably damaging Het
Cmbl T G 15: 31,585,309 V101G probably damaging Het
Colgalt2 T A 1: 152,495,792 probably benign Het
Coq4 C T 2: 29,789,998 Q101* probably null Het
Cr2 T C 1: 195,163,596 probably benign Het
Cry1 T C 10: 85,184,359 D38G probably damaging Het
Dmxl2 T C 9: 54,419,945 D758G probably benign Het
Epsti1 C T 14: 77,927,237 probably benign Het
Fam24b T C 7: 131,327,186 probably benign Het
Fem1c G A 18: 46,505,160 R592C probably benign Het
Foxred1 T C 9: 35,204,882 Y490C possibly damaging Het
Gm14124 A G 2: 150,268,603 I404M unknown Het
Gm9875 A G 2: 13,557,888 K9R unknown Het
Grid2ip T C 5: 143,379,362 S322P probably damaging Het
Gucy1b2 A G 14: 62,403,159 probably benign Het
Hmcn1 A T 1: 150,657,376 probably null Het
Hpdl C T 4: 116,820,787 S159N possibly damaging Het
Hsd17b12 A T 2: 94,033,642 M285K probably benign Het
Icam5 T C 9: 21,032,197 I23T probably benign Het
Kat5 A G 19: 5,608,336 probably benign Het
Lama3 A G 18: 12,506,949 N67S probably benign Het
Lamb2 T C 9: 108,486,105 probably benign Het
Lgals3bp A G 11: 118,393,394 F453S probably damaging Het
Lypd4 A G 7: 24,865,375 Y113H probably damaging Het
Mdm1 C T 10: 118,146,601 T47M probably damaging Het
Mei1 C A 15: 82,070,150 T52K probably benign Het
Meiob G A 17: 24,818,262 probably benign Het
Ndufaf6 A G 4: 11,051,224 V292A probably damaging Het
Neb T A 2: 52,264,026 M2358L possibly damaging Het
Nlrp1b A G 11: 71,156,179 S1119P possibly damaging Het
Nsmaf A G 4: 6,418,470 probably null Het
Ogfod1 T C 8: 94,047,267 probably benign Het
Olfr1097 T C 2: 86,890,419 Y252C possibly damaging Het
Olfr1410 G T 1: 92,607,896 V20L probably benign Het
Olfr291 T C 7: 84,857,137 I256T probably damaging Het
Osbpl1a T A 18: 12,882,279 probably null Het
Otud7b T A 3: 96,144,959 probably benign Het
P3h3 T A 6: 124,856,035 H185L probably damaging Het
P4htm G A 9: 108,583,724 A183V probably null Het
Peak1 C T 9: 56,227,098 probably benign Het
Phf20l1 A G 15: 66,595,122 K88R probably damaging Het
Phlpp2 A G 8: 109,933,211 N721S probably benign Het
Plagl2 T C 2: 153,235,944 K39R probably benign Het
Plppr1 A T 4: 49,323,466 N252I probably damaging Het
Pom121l2 C T 13: 21,982,036 A159V probably damaging Het
Prom2 C A 2: 127,539,995 probably null Het
Prrc2c T C 1: 162,682,426 T1017A probably damaging Het
Rimbp3 G T 16: 17,211,699 A996S probably damaging Het
Rnf213 A G 11: 119,431,717 T1387A probably benign Het
Scaper A T 9: 55,815,518 probably benign Het
Scara5 A G 14: 65,759,648 E403G possibly damaging Het
Scrib T C 15: 76,067,553 I94V possibly damaging Het
Shank3 T C 15: 89,524,147 F67L possibly damaging Het
Shprh T C 10: 11,207,112 F1562L probably damaging Het
Src C T 2: 157,469,921 T529M probably damaging Het
Syde1 T C 10: 78,589,095 probably benign Het
Tarsl2 A T 7: 65,678,071 R509S probably damaging Het
Tle6 T A 10: 81,594,346 H324L probably damaging Het
Tnfaip8 ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 18: 50,046,845 probably benign Het
Tnfrsf14 T A 4: 154,925,380 K115* probably null Het
Trappc10 T C 10: 78,201,497 N824S possibly damaging Het
Tsc1 C T 2: 28,671,778 S309F probably damaging Het
Ttc21a A G 9: 119,961,842 I885V possibly damaging Het
Ttn C T 2: 76,740,453 A26699T probably damaging Het
Ttn T C 2: 76,948,371 Y1262C unknown Het
Usp49 T C 17: 47,674,926 probably null Het
Vmn1r226 A T 17: 20,687,871 T122S probably benign Het
Vps8 A T 16: 21,559,337 T1033S probably benign Het
Vwf C A 6: 125,685,837 T2728K probably benign Het
Wdr5b T C 16: 36,041,996 S162P probably benign Het
Xrn1 C T 9: 96,026,877 Q1235* probably null Het
Other mutations in Sycp2l
AlleleSourceChrCoordTypePredicted EffectPPH Score
PIT4531001:Sycp2l UTSW 13 41146672 missense probably null 0.00
R0016:Sycp2l UTSW 13 41157500 intron probably benign
R0024:Sycp2l UTSW 13 41141788 missense probably damaging 1.00
R0024:Sycp2l UTSW 13 41141788 missense probably damaging 1.00
R0099:Sycp2l UTSW 13 41129525 splice site probably benign
R0471:Sycp2l UTSW 13 41150530 splice site probably null
R0582:Sycp2l UTSW 13 41137955 splice site probably benign
R1311:Sycp2l UTSW 13 41135185 nonsense probably null
R1999:Sycp2l UTSW 13 41118304 missense probably benign 0.11
R3115:Sycp2l UTSW 13 41148798 missense probably benign 0.41
R3977:Sycp2l UTSW 13 41141964 missense probably damaging 0.99
R3979:Sycp2l UTSW 13 41141964 missense probably damaging 0.99
R4643:Sycp2l UTSW 13 41143465 missense probably benign 0.01
R5027:Sycp2l UTSW 13 41129771 critical splice acceptor site probably null
R5037:Sycp2l UTSW 13 41129861 missense possibly damaging 0.89
R5780:Sycp2l UTSW 13 41129500 missense possibly damaging 0.61
R6216:Sycp2l UTSW 13 41141724 missense probably damaging 1.00
R7035:Sycp2l UTSW 13 41157497 missense unknown
R7179:Sycp2l UTSW 13 41129782 missense probably damaging 1.00
R7267:Sycp2l UTSW 13 41146594 missense possibly damaging 0.69
R7470:Sycp2l UTSW 13 41163104 missense probably benign 0.01
R7593:Sycp2l UTSW 13 41172716 missense probably damaging 1.00
R8030:Sycp2l UTSW 13 41172670 missense not run
R8218:Sycp2l UTSW 13 41118068 missense probably damaging 1.00
R8303:Sycp2l UTSW 13 41129799 missense probably damaging 1.00
Z1177:Sycp2l UTSW 13 41114364 unclassified probably benign
Z1177:Sycp2l UTSW 13 41146582 missense possibly damaging 0.84
Predicted Primers PCR Primer
(F):5'- CCTTCATGTGTTCAGATAATCGGCCTC -3'
(R):5'- ACTCTCAAGTCTTCTGCTTGACCAAAG -3'

Sequencing Primer
(F):5'- CAGATAATCGGCCTCTGAGTC -3'
(R):5'- ggtgggtgggtgagtgg -3'
Posted On2013-07-11