Incidental Mutation 'R7182:Slc30a3'
ID 559039
Institutional Source Beutler Lab
Gene Symbol Slc30a3
Ensembl Gene ENSMUSG00000029151
Gene Name solute carrier family 30 (zinc transporter), member 3
Synonyms Znt3
MMRRC Submission
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.392) question?
Stock # R7182 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 31086106-31108237 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to C at 31089670 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Methionine to Arginine at position 103 (M103R)
Ref Sequence ENSEMBL: ENSMUSP00000031037 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031037] [ENSMUST00000200906] [ENSMUST00000201396] [ENSMUST00000201783] [ENSMUST00000202731] [ENSMUST00000202740]
AlphaFold P97441
Predicted Effect probably damaging
Transcript: ENSMUST00000031037
AA Change: M103R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000031037
Gene: ENSMUSG00000029151
AA Change: M103R

DomainStartEndE-ValueType
low complexity region 36 48 N/A INTRINSIC
Pfam:Cation_efflux 76 293 7.6e-46 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000200906
AA Change: M91R

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000144098
Gene: ENSMUSG00000029151
AA Change: M91R

DomainStartEndE-ValueType
low complexity region 19 36 N/A INTRINSIC
Pfam:Cation_efflux 64 173 2e-26 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000201396
AA Change: M54R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000144295
Gene: ENSMUSG00000029151
AA Change: M54R

DomainStartEndE-ValueType
Pfam:Cation_efflux 27 124 1.1e-25 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000201783
Predicted Effect probably benign
Transcript: ENSMUST00000202731
SMART Domains Protein: ENSMUSP00000144574
Gene: ENSMUSG00000029151

DomainStartEndE-ValueType
low complexity region 50 58 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000202740
AA Change: M54R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000144566
Gene: ENSMUSG00000029151
AA Change: M54R

DomainStartEndE-ValueType
Pfam:Cation_efflux 27 244 3e-46 PFAM
Meta Mutation Damage Score 0.8965 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency 96% (70/73)
MGI Phenotype PHENOTYPE: While zinc is absent from synaptic vesicles in homozygous null mice, inactivation of this locus does not affect brain morphology. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930562C15Rik T C 16: 4,849,714 V323A unknown Het
AC117241.1 A G 17: 7,352,688 V158A unknown Het
Acadm A G 3: 153,941,881 probably null Het
Adcy10 T G 1: 165,543,470 probably null Het
Aldh6a1 C T 12: 84,441,831 A94T probably benign Het
Ano2 T A 6: 125,790,293 L229Q probably damaging Het
Cacna1h C T 17: 25,377,655 R1828H probably damaging Het
Ccdc33 A T 9: 58,034,173 probably null Het
Cep112 A C 11: 108,682,844 D6A probably benign Het
Chd9 T C 8: 91,006,622 F1373S unknown Het
Cog5 T C 12: 31,685,708 L158P probably damaging Het
Col6a3 G A 1: 90,803,678 Q1618* probably null Het
Dlg5 A G 14: 24,244,856 V3A Het
Dnah7a T A 1: 53,620,461 probably null Het
Dpp10 A T 1: 123,341,151 H716Q probably benign Het
Epor A G 9: 21,963,329 F35L probably benign Het
Ergic1 A T 17: 26,654,882 Y92F Het
Fam71a C T 1: 191,163,351 R365H probably damaging Het
Fam98a G A 17: 75,539,018 Q273* probably null Het
Fhdc1 G A 3: 84,448,850 T429I probably damaging Het
Fmnl2 T A 2: 53,107,441 L468Q unknown Het
Fmnl3 C T 15: 99,321,782 R695Q probably damaging Het
Gabrg2 T C 11: 41,920,506 M271V probably damaging Het
Gk5 G T 9: 96,119,526 V26L possibly damaging Het
Gm14412 A C 2: 177,315,615 N162K probably benign Het
Gm3604 T C 13: 62,371,875 D22G probably damaging Het
Gm5565 G T 5: 146,158,055 H294N probably benign Het
Hsf2 T A 10: 57,505,176 D287E possibly damaging Het
Impdh2 G A 9: 108,563,208 R231H possibly damaging Het
Irak3 T C 10: 120,166,511 H234R probably damaging Het
Lrba GTTCCCTTC GTTC 3: 86,741,458 probably null Het
Lrch3 T A 16: 32,993,779 D551E probably benign Het
Manba A T 3: 135,567,513 N736I probably benign Het
Map2 A G 1: 66,412,653 D234G possibly damaging Het
Mdk C A 2: 91,930,852 K121N unknown Het
Mfn1 T A 3: 32,564,220 L526Q probably damaging Het
Mfsd2b A G 12: 4,866,157 probably null Het
Mnat1 G T 12: 73,230,678 E233* probably null Het
Mtmr4 T C 11: 87,604,605 probably null Het
Mtrf1 A G 14: 79,423,464 E432G possibly damaging Het
Muc5b C T 7: 141,842,645 R165C unknown Het
Naip6 T A 13: 100,316,149 I135F probably benign Het
Nod2 A G 8: 88,663,832 T256A probably benign Het
Notch4 T A 17: 34,583,499 V1298E probably damaging Het
Nudc G T 4: 133,534,465 D169E possibly damaging Het
Obscn A T 11: 59,035,101 I5602N probably damaging Het
Olfr1468-ps1 G A 19: 13,375,844 G294E unknown Het
Osbpl10 G A 9: 115,067,251 D18N probably damaging Het
Pigk G A 3: 152,722,551 V72I possibly damaging Het
Prl8a6 C T 13: 27,437,170 E26K probably damaging Het
Prpf8 A G 11: 75,490,727 Y318C possibly damaging Het
Rab13 A G 3: 90,224,763 D159G possibly damaging Het
Rgl2 T C 17: 33,934,990 F457L possibly damaging Het
Ryr2 T C 13: 11,759,757 H1171R probably benign Het
Scn4a T A 11: 106,330,308 I842F probably benign Het
Scnm1 A T 3: 95,133,854 N14K possibly damaging Het
Serinc1 A T 10: 57,524,361 I137N probably benign Het
Slco1a1 A T 6: 141,911,839 C589S probably damaging Het
Slco1b2 A G 6: 141,656,930 Y203C probably damaging Het
Spty2d1 A T 7: 46,998,523 D219E probably benign Het
Svep1 A T 4: 58,043,991 S3552T probably benign Het
Tmem62 A G 2: 121,004,743 I516M probably benign Het
Trim61 A T 8: 65,013,614 S332T probably damaging Het
Trmt10b A C 4: 45,308,520 T227P probably benign Het
Trpc3 T C 3: 36,655,109 Q406R probably benign Het
Ttc30b A T 2: 75,937,949 Y153* probably null Het
Ush2a A T 1: 188,753,543 Y2950F probably benign Het
Usp32 C T 11: 85,040,170 G478D probably benign Het
Wdfy3 A G 5: 101,943,892 L527P possibly damaging Het
Wdr73 A G 7: 80,893,678 V163A possibly damaging Het
Other mutations in Slc30a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00803:Slc30a3 APN 5 31088044 missense probably damaging 1.00
IGL01411:Slc30a3 APN 5 31090080 missense probably benign 0.00
IGL02678:Slc30a3 APN 5 31088332 nonsense probably null
R0606:Slc30a3 UTSW 5 31088723 missense probably benign 0.02
R1173:Slc30a3 UTSW 5 31086810 missense probably damaging 1.00
R1184:Slc30a3 UTSW 5 31090166 missense probably damaging 1.00
R1924:Slc30a3 UTSW 5 31088404 missense probably damaging 1.00
R2076:Slc30a3 UTSW 5 31086821 nonsense probably null
R2432:Slc30a3 UTSW 5 31088694 missense probably damaging 1.00
R3552:Slc30a3 UTSW 5 31095078 intron probably benign
R4011:Slc30a3 UTSW 5 31086859 missense probably damaging 1.00
R4731:Slc30a3 UTSW 5 31093294 missense probably benign
R4956:Slc30a3 UTSW 5 31086903 missense possibly damaging 0.92
R5469:Slc30a3 UTSW 5 31088660 missense probably damaging 1.00
R6364:Slc30a3 UTSW 5 31088739 missense possibly damaging 0.90
R6799:Slc30a3 UTSW 5 31089614 missense probably damaging 1.00
R7182:Slc30a3 UTSW 5 31086825 missense probably benign
R7195:Slc30a3 UTSW 5 31088795 missense probably benign 0.04
R7260:Slc30a3 UTSW 5 31088346 missense probably damaging 0.99
R8057:Slc30a3 UTSW 5 31090051 splice site probably benign
R8836:Slc30a3 UTSW 5 31093324 missense possibly damaging 0.91
R8855:Slc30a3 UTSW 5 31087981 missense possibly damaging 0.62
R8866:Slc30a3 UTSW 5 31087981 missense possibly damaging 0.62
R9193:Slc30a3 UTSW 5 31088744 missense probably damaging 1.00
R9456:Slc30a3 UTSW 5 31089545 frame shift probably null
Predicted Primers PCR Primer
(F):5'- TCTCTGCAGAGGACACAAGC -3'
(R):5'- CTTTAATAACCAGCCTCCTGTTATG -3'

Sequencing Primer
(F):5'- CAATCAGATCAGGGCCCTAAGG -3'
(R):5'- CAGCCTCCTGTTATGAAAATCAAGTC -3'
Posted On 2019-06-26