Mutagenetix > Incidental Mutation

Incidental Mutation 'R7187:Zfp110'

559359

Institutional Source

Beutler Lab

Gene Symbol

Zfp110

Ensembl Gene

ENSMUSG00000058638

Gene Name

zinc finger protein 110

Synonyms

Nrif1, 2900024E01Rik, NRIF

MMRRC Submission

045377-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.658) question?

Stock #

R7187 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

12568688-12584504 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 12583753 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 800 (Y800*)

Ref Sequence

ENSEMBL: ENSMUSP00000004614 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004614] [ENSMUST00000168247]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000004614
AA Change: Y800*

SMART Domains

Protein: ENSMUSP00000004614
Gene: ENSMUSG00000058638
AA Change: Y800*

Domain	Start	End	E-Value	Type
KRAB	18	78	1.38e-26	SMART
SCAN	158	269	1.48e-39	SMART
KRAB	284	351	2.94e-12	SMART
low complexity region	424	438	N/A	INTRINSIC
ZnF_C2H2	688	710	1.43e-1	SMART
ZnF_C2H2	716	738	2.24e-3	SMART
ZnF_C2H2	744	766	2.27e-4	SMART
ZnF_C2H2	772	794	6.32e-3	SMART
ZnF_C2H2	800	822	2.75e-3	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000168247
AA Change: Y800*

SMART Domains

Protein: ENSMUSP00000132060
Gene: ENSMUSG00000058638
AA Change: Y800*

Domain	Start	End	E-Value	Type
KRAB	18	78	1.38e-26	SMART
SCAN	158	269	1.48e-39	SMART
KRAB	284	351	2.94e-12	SMART
low complexity region	424	438	N/A	INTRINSIC
ZnF_C2H2	688	710	1.43e-1	SMART
ZnF_C2H2	716	738	2.24e-3	SMART
ZnF_C2H2	744	766	2.27e-4	SMART
ZnF_C2H2	772	794	6.32e-3	SMART
ZnF_C2H2	800	822	2.75e-3	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (59/59)

MGI Phenotype

PHENOTYPE: Homozygous mutants on a C57BL/6 background die at embryonic day 12. On a strain 129 background, mutants are viable and fertile, but males are more docile and testis weight is greatly reduced. On an F2 background, 20% of homozygous pups die neonatally. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	A	G	2: 25,327,733 (GRCm39)	Y716C	probably damaging	Het
Abcc1	A	G	16: 14,284,861 (GRCm39)	I1237V	probably benign	Het
Adam34	C	T	8: 44,105,565 (GRCm39)	A27T	probably benign	Het
Aff3	T	C	1: 38,257,478 (GRCm39)	S415G	probably damaging	Het
Ak7	T	C	12: 105,711,532 (GRCm39)	Y390H	probably benign	Het
Arap2	A	C	5: 62,826,396 (GRCm39)	M1056R	probably damaging	Het
Brf1	T	C	12: 112,923,945 (GRCm39)	Y676C	unknown	Het
Cachd1	T	A	4: 100,833,552 (GRCm39)	H776Q	possibly damaging	Het
Cacng7	T	C	7: 3,385,183 (GRCm39)	V28A	probably damaging	Het
Camk2g	A	T	14: 20,792,780 (GRCm39)	D359E	probably benign	Het
Cd209b	T	C	8: 3,976,638 (GRCm39)	D16G	probably benign	Het
Ceacam5	A	G	7: 17,493,410 (GRCm39)	E811G	possibly damaging	Het
Cecr2	T	A	6: 120,733,647 (GRCm39)	S545T	probably benign	Het
Cep55	T	C	19: 38,048,806 (GRCm39)		probably null	Het
Ctif	C	A	18: 75,770,290 (GRCm39)	V32L	probably damaging	Het
Cwc27	G	A	13: 104,797,900 (GRCm39)	A353V	probably benign	Het
Dclk3	T	A	9: 111,314,064 (GRCm39)	S713R	probably damaging	Het
Dlec1	C	T	9: 118,941,214 (GRCm39)	H255Y	probably benign	Het
Dlgap1	A	G	17: 70,823,093 (GRCm39)	H26R	possibly damaging	Het
Dydc1	C	T	14: 40,800,051 (GRCm39)	T19I	possibly damaging	Het
Efcab12	G	A	6: 115,800,474 (GRCm39)	P183L	not run	Het
Eif1ad19	T	C	12: 87,740,708 (GRCm39)		probably benign	Het
Eri3	C	A	4: 117,446,343 (GRCm39)	Q219K	probably benign	Het
Fam135a	A	G	1: 24,083,295 (GRCm39)	L310P	probably damaging	Het
Fgd5	T	A	6: 91,965,272 (GRCm39)	S502T	possibly damaging	Het
Fgf8	A	G	19: 45,730,106 (GRCm39)	S57P	probably benign	Het
Gls	T	C	1: 52,259,139 (GRCm39)	E154G	probably damaging	Het
Gm28042	T	C	2: 119,870,176 (GRCm39)	L705P	probably damaging	Het
Golgb1	C	A	16: 36,736,512 (GRCm39)	Q1961K	probably benign	Het
Herc3	C	A	6: 58,833,616 (GRCm39)	Q168K	probably benign	Het
Il31ra	C	A	13: 112,682,845 (GRCm39)	C168F	probably benign	Het
Ino80	A	T	2: 119,257,072 (GRCm39)	D860E	probably benign	Het
Iqcm	T	G	8: 76,480,044 (GRCm39)	L334R	probably benign	Het
Lrrk2	A	G	15: 91,641,204 (GRCm39)	D1587G	possibly damaging	Het
Map4	T	A	9: 109,882,201 (GRCm39)	V355E	probably benign	Het
Mapk13	T	A	17: 28,995,361 (GRCm39)	I194N	probably damaging	Het
Mtus2	A	G	5: 148,013,515 (GRCm39)	T103A	probably benign	Het
Naglu	G	T	11: 100,961,158 (GRCm39)	G70W	probably benign	Het
Nlrp4f	A	T	13: 65,343,201 (GRCm39)	M126K	possibly damaging	Het
Or4c120	T	C	2: 89,001,714 (GRCm39)		probably benign	Het
Or5p61	A	T	7: 107,758,585 (GRCm39)	V165E	probably benign	Het
Pdia4	T	C	6: 47,790,193 (GRCm39)	T16A	unknown	Het
Pou6f2	G	A	13: 18,414,298 (GRCm39)	A159V		Het
Ripor1	A	G	8: 106,344,506 (GRCm39)	T547A	probably benign	Het
Rundc3b	A	G	5: 8,542,506 (GRCm39)	S389P	probably damaging	Het
Sorbs1	G	C	19: 40,365,244 (GRCm39)	R180G	probably benign	Het
Spats2	T	C	15: 99,110,054 (GRCm39)	S484P	probably benign	Het
Supv3l1	G	A	10: 62,271,328 (GRCm39)	T403I	probably damaging	Het
Tacstd2	G	A	6: 67,512,180 (GRCm39)	R171W	probably damaging	Het
Taok2	A	T	7: 126,471,552 (GRCm39)	F542L	probably damaging	Het
Tbc1d31	T	A	15: 57,801,459 (GRCm39)	N331K	possibly damaging	Het
Tff2	A	T	17: 31,361,200 (GRCm39)	C118S	probably damaging	Het
Tmprss7	G	A	16: 45,498,317 (GRCm39)	T354I	possibly damaging	Het
Tmtc3	A	T	10: 100,313,774 (GRCm39)	F33I	probably damaging	Het
Tpbpa	G	A	13: 61,088,399 (GRCm39)		probably benign	Het
Ube3a	G	T	7: 58,925,653 (GRCm39)	V165F	probably benign	Het
Vmn2r4	T	G	3: 64,322,681 (GRCm39)	T13P	probably benign	Het
Wnt8b	A	G	19: 44,500,121 (GRCm39)	D236G	probably benign	Het
Ythdf3	C	A	3: 16,258,451 (GRCm39)	D210E	probably benign	Het

Other mutations in Zfp110

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00705:Zfp110	APN	7	12,583,086 (GRCm39)	missense	probably benign	0.38
IGL01094:Zfp110	APN	7	12,583,723 (GRCm39)	missense	probably damaging	1.00
IGL01576:Zfp110	APN	7	12,583,598 (GRCm39)	missense	probably damaging	1.00
IGL01859:Zfp110	APN	7	12,583,467 (GRCm39)	missense	possibly damaging	0.86
IGL02003:Zfp110	APN	7	12,583,832 (GRCm39)	nonsense	probably null
R0122:Zfp110	UTSW	7	12,582,524 (GRCm39)	missense	possibly damaging	0.51
R0357:Zfp110	UTSW	7	12,570,302 (GRCm39)	missense	probably damaging	0.98
R0383:Zfp110	UTSW	7	12,583,187 (GRCm39)	missense	probably benign	0.00
R0725:Zfp110	UTSW	7	12,570,290 (GRCm39)	missense	possibly damaging	0.52
R0926:Zfp110	UTSW	7	12,583,808 (GRCm39)	nonsense	probably null
R1146:Zfp110	UTSW	7	12,580,721 (GRCm39)	critical splice acceptor site	probably null
R1146:Zfp110	UTSW	7	12,580,721 (GRCm39)	critical splice acceptor site	probably null
R1472:Zfp110	UTSW	7	12,582,468 (GRCm39)	missense	possibly damaging	0.85
R1663:Zfp110	UTSW	7	12,582,569 (GRCm39)	missense	probably benign	0.08
R1975:Zfp110	UTSW	7	12,582,429 (GRCm39)	missense	probably benign	0.00
R2046:Zfp110	UTSW	7	12,583,349 (GRCm39)	missense	probably benign	0.00
R2296:Zfp110	UTSW	7	12,583,467 (GRCm39)	missense	probably damaging	0.97
R2341:Zfp110	UTSW	7	12,583,113 (GRCm39)	missense	probably benign	0.04
R4332:Zfp110	UTSW	7	12,578,498 (GRCm39)	nonsense	probably null
R5892:Zfp110	UTSW	7	12,582,405 (GRCm39)	missense	probably benign	0.00
R5955:Zfp110	UTSW	7	12,582,672 (GRCm39)	missense	possibly damaging	0.85
R6083:Zfp110	UTSW	7	12,578,602 (GRCm39)	missense	possibly damaging	0.95
R6115:Zfp110	UTSW	7	12,583,701 (GRCm39)	missense	probably damaging	0.98
R7455:Zfp110	UTSW	7	12,581,984 (GRCm39)	missense	probably benign
R7570:Zfp110	UTSW	7	12,583,267 (GRCm39)	missense	possibly damaging	0.94
R7727:Zfp110	UTSW	7	12,582,922 (GRCm39)	missense	possibly damaging	0.91
R7895:Zfp110	UTSW	7	12,571,020 (GRCm39)	missense	possibly damaging	0.86
R8179:Zfp110	UTSW	7	12,578,498 (GRCm39)	nonsense	probably null
R8703:Zfp110	UTSW	7	12,582,888 (GRCm39)	missense	probably benign
R9207:Zfp110	UTSW	7	12,582,485 (GRCm39)	missense	probably benign	0.33
R9794:Zfp110	UTSW	7	12,578,521 (GRCm39)	missense	probably benign	0.07

Predicted Primers

PCR Primer
(F):5'- GGCCTGTGGGAAAGCATTTG -3'
(R):5'- TGTCATACTGAGTGTCTGCATAG -3'

Sequencing Primer
(F):5'- GGAAAGCATTTGTTCAGAGCTCCTC -3'
(R):5'- GTCTGCATAGTACATCTCAAGGCTG -3'

Posted On

2019-06-26