Incidental Mutation 'R0593:Irf7'
| ID |
56060 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Irf7
|
| Ensembl Gene |
ENSMUSG00000025498 |
| Gene Name |
interferon regulatory factor 7 |
| Synonyms |
|
| MMRRC Submission |
038783-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R0593 (G1)
|
| Quality Score |
216 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
140843096-140846412 bp(-) (GRCm39) |
| Type of Mutation |
unclassified |
| DNA Base Change (assembly) |
T to C
at 140844975 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000147472
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026571]
[ENSMUST00000080654]
[ENSMUST00000097952]
[ENSMUST00000106023]
[ENSMUST00000106027]
[ENSMUST00000122143]
[ENSMUST00000209899]
[ENSMUST00000210124]
[ENSMUST00000167263]
[ENSMUST00000155123]
[ENSMUST00000210773]
|
| AlphaFold |
P70434 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000026571
|
| SMART Domains |
Protein: ENSMUSP00000026571
Gene: ENSMUSG00000025498
| Domain | Start | End | E-Value | Type |
|---|
|
IRF
|
5 |
127 |
1.13e-54 |
SMART |
|
IRF-3
|
240 |
420 |
1.38e-63 |
SMART |
|
low complexity region
|
425 |
442 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000080654
|
| SMART Domains |
Protein: ENSMUSP00000079484
Gene: ENSMUSG00000025497
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
|
CA
|
53 |
125 |
3.78e-2 |
SMART |
|
CA
|
152 |
238 |
2.34e-1 |
SMART |
|
Blast:CA
|
277 |
355 |
3e-35 |
BLAST |
|
Blast:CA
|
388 |
458 |
3e-24 |
BLAST |
|
transmembrane domain
|
478 |
500 |
N/A |
INTRINSIC |
|
low complexity region
|
546 |
580 |
N/A |
INTRINSIC |
|
low complexity region
|
634 |
653 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000097952
|
| SMART Domains |
Protein: ENSMUSP00000095565
Gene: ENSMUSG00000025498
| Domain | Start | End | E-Value | Type |
|---|
|
IRF
|
5 |
127 |
1.13e-54 |
SMART |
|
IRF-3
|
209 |
389 |
1.38e-63 |
SMART |
|
low complexity region
|
394 |
411 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106023
|
| SMART Domains |
Protein: ENSMUSP00000101644
Gene: ENSMUSG00000025498
| Domain | Start | End | E-Value | Type |
|---|
|
IRF
|
5 |
127 |
1.13e-54 |
SMART |
|
IRF-3
|
208 |
388 |
1.38e-63 |
SMART |
|
low complexity region
|
393 |
410 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106027
|
| SMART Domains |
Protein: ENSMUSP00000101648
Gene: ENSMUSG00000038611
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
24 |
35 |
N/A |
INTRINSIC |
|
low complexity region
|
39 |
70 |
N/A |
INTRINSIC |
|
RING
|
109 |
149 |
3.78e-5 |
SMART |
|
C1
|
173 |
229 |
7.05e-2 |
SMART |
|
PHD
|
187 |
233 |
1.77e-14 |
SMART |
|
RING
|
188 |
232 |
3.17e0 |
SMART |
|
low complexity region
|
332 |
369 |
N/A |
INTRINSIC |
|
low complexity region
|
491 |
505 |
N/A |
INTRINSIC |
|
low complexity region
|
507 |
522 |
N/A |
INTRINSIC |
|
low complexity region
|
717 |
728 |
N/A |
INTRINSIC |
|
low complexity region
|
831 |
857 |
N/A |
INTRINSIC |
|
low complexity region
|
891 |
902 |
N/A |
INTRINSIC |
|
low complexity region
|
944 |
955 |
N/A |
INTRINSIC |
|
low complexity region
|
965 |
976 |
N/A |
INTRINSIC |
|
low complexity region
|
999 |
1020 |
N/A |
INTRINSIC |
|
low complexity region
|
1027 |
1043 |
N/A |
INTRINSIC |
|
low complexity region
|
1051 |
1090 |
N/A |
INTRINSIC |
|
low complexity region
|
1094 |
1151 |
N/A |
INTRINSIC |
|
low complexity region
|
1160 |
1173 |
N/A |
INTRINSIC |
|
low complexity region
|
1217 |
1241 |
N/A |
INTRINSIC |
|
low complexity region
|
1245 |
1261 |
N/A |
INTRINSIC |
|
low complexity region
|
1288 |
1306 |
N/A |
INTRINSIC |
|
low complexity region
|
1308 |
1319 |
N/A |
INTRINSIC |
|
low complexity region
|
1359 |
1376 |
N/A |
INTRINSIC |
|
low complexity region
|
1426 |
1441 |
N/A |
INTRINSIC |
|
low complexity region
|
1575 |
1592 |
N/A |
INTRINSIC |
|
Blast:IG_like
|
1593 |
1636 |
4e-14 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000122143
|
| SMART Domains |
Protein: ENSMUSP00000113195
Gene: ENSMUSG00000038611
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
14 |
70 |
7.05e-2 |
SMART |
|
PHD
|
28 |
74 |
1.77e-14 |
SMART |
|
low complexity region
|
173 |
210 |
N/A |
INTRINSIC |
|
low complexity region
|
332 |
346 |
N/A |
INTRINSIC |
|
low complexity region
|
348 |
363 |
N/A |
INTRINSIC |
|
low complexity region
|
558 |
569 |
N/A |
INTRINSIC |
|
low complexity region
|
672 |
698 |
N/A |
INTRINSIC |
|
low complexity region
|
732 |
743 |
N/A |
INTRINSIC |
|
low complexity region
|
785 |
796 |
N/A |
INTRINSIC |
|
low complexity region
|
806 |
817 |
N/A |
INTRINSIC |
|
low complexity region
|
840 |
861 |
N/A |
INTRINSIC |
|
low complexity region
|
868 |
884 |
N/A |
INTRINSIC |
|
low complexity region
|
892 |
931 |
N/A |
INTRINSIC |
|
low complexity region
|
935 |
992 |
N/A |
INTRINSIC |
|
low complexity region
|
1001 |
1014 |
N/A |
INTRINSIC |
|
low complexity region
|
1058 |
1082 |
N/A |
INTRINSIC |
|
low complexity region
|
1086 |
1102 |
N/A |
INTRINSIC |
|
low complexity region
|
1129 |
1147 |
N/A |
INTRINSIC |
|
low complexity region
|
1149 |
1160 |
N/A |
INTRINSIC |
|
low complexity region
|
1200 |
1217 |
N/A |
INTRINSIC |
|
low complexity region
|
1267 |
1282 |
N/A |
INTRINSIC |
|
low complexity region
|
1416 |
1433 |
N/A |
INTRINSIC |
|
Blast:IG_like
|
1434 |
1477 |
4e-14 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000123525
|
| SMART Domains |
Protein: ENSMUSP00000121026
Gene: ENSMUSG00000025498
| Domain | Start | End | E-Value | Type |
|---|
|
IRF
|
1 |
69 |
6.35e-3 |
SMART |
|
IRF-3
|
77 |
251 |
2.62e-55 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156938
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148414
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155744
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127223
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000209899
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127161
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146373
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131399
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144250
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000210124
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000142572
|
| SMART Domains |
Protein: ENSMUSP00000117393
Gene: ENSMUSG00000038611
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
31 |
N/A |
INTRINSIC |
|
low complexity region
|
41 |
52 |
N/A |
INTRINSIC |
|
low complexity region
|
75 |
96 |
N/A |
INTRINSIC |
|
low complexity region
|
103 |
119 |
N/A |
INTRINSIC |
|
low complexity region
|
127 |
166 |
N/A |
INTRINSIC |
|
low complexity region
|
170 |
227 |
N/A |
INTRINSIC |
|
low complexity region
|
236 |
249 |
N/A |
INTRINSIC |
|
low complexity region
|
293 |
317 |
N/A |
INTRINSIC |
|
low complexity region
|
321 |
337 |
N/A |
INTRINSIC |
|
low complexity region
|
364 |
382 |
N/A |
INTRINSIC |
|
low complexity region
|
384 |
395 |
N/A |
INTRINSIC |
|
low complexity region
|
435 |
452 |
N/A |
INTRINSIC |
|
low complexity region
|
666 |
683 |
N/A |
INTRINSIC |
|
Blast:IG_like
|
684 |
727 |
3e-14 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000130687
|
| SMART Domains |
Protein: ENSMUSP00000123351
Gene: ENSMUSG00000038611
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
33 |
50 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
115 |
N/A |
INTRINSIC |
|
low complexity region
|
224 |
241 |
N/A |
INTRINSIC |
|
Blast:IG_like
|
242 |
285 |
5e-15 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000167263
|
| SMART Domains |
Protein: ENSMUSP00000127292
Gene: ENSMUSG00000025497
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
|
CA
|
53 |
125 |
3.78e-2 |
SMART |
|
CA
|
152 |
238 |
2.34e-1 |
SMART |
|
Blast:CA
|
277 |
355 |
3e-35 |
BLAST |
|
Blast:CA
|
388 |
458 |
1e-24 |
BLAST |
|
low complexity region
|
462 |
476 |
N/A |
INTRINSIC |
|
low complexity region
|
496 |
518 |
N/A |
INTRINSIC |
|
low complexity region
|
520 |
544 |
N/A |
INTRINSIC |
|
low complexity region
|
559 |
576 |
N/A |
INTRINSIC |
|
transmembrane domain
|
640 |
662 |
N/A |
INTRINSIC |
|
low complexity region
|
708 |
742 |
N/A |
INTRINSIC |
|
low complexity region
|
796 |
815 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000155123
|
| SMART Domains |
Protein: ENSMUSP00000120759
Gene: ENSMUSG00000038611
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
24 |
35 |
N/A |
INTRINSIC |
|
low complexity region
|
39 |
70 |
N/A |
INTRINSIC |
|
RING
|
109 |
149 |
3.78e-5 |
SMART |
|
Blast:C1
|
165 |
209 |
2e-17 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000210506
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000210773
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 96.9%
- 20x: 93.4%
|
| Validation Efficiency |
100% (39/39) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] IRF7 encodes interferon regulatory factor 7, a member of the interferon regulatory transcription factor (IRF) family. IRF7 has been shown to play a role in the transcriptional activation of virus-inducible cellular genes, including interferon beta chain genes. Inducible expression of IRF7 is largely restricted to lymphoid tissue. Multiple IRF7 transcript variants have been identified, although the functional consequences of these have not yet been established. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice are more vulnerable to viral infection and exhibit decreased serum interferon levels in response to viral infection. [provided by MGI curators]
|
| Allele List at MGI |
4 alleles |
| Other mutations in this stock |
Total: 33 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca8a |
T |
C |
11: 109,958,925 (GRCm39) |
D733G |
probably damaging |
Het |
| Acmsd |
T |
C |
1: 127,666,340 (GRCm39) |
|
probably benign |
Het |
| Adam34 |
T |
C |
8: 44,104,724 (GRCm39) |
Y307C |
possibly damaging |
Het |
| Alox12e |
A |
G |
11: 70,211,723 (GRCm39) |
|
probably benign |
Het |
| Ankrd50 |
C |
A |
3: 38,537,156 (GRCm39) |
G29* |
probably null |
Het |
| Arhgap17 |
T |
C |
7: 122,885,966 (GRCm39) |
|
probably benign |
Het |
| Asah1 |
A |
G |
8: 41,802,619 (GRCm39) |
M141T |
probably benign |
Het |
| Atg2a |
GCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC |
GCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC |
19: 6,295,037 (GRCm39) |
|
probably benign |
Het |
| Bsn |
A |
T |
9: 107,987,505 (GRCm39) |
I2749N |
unknown |
Het |
| Cds2 |
G |
A |
2: 132,139,296 (GRCm39) |
|
probably benign |
Het |
| Ckmt2 |
A |
G |
13: 92,001,757 (GRCm39) |
V384A |
probably damaging |
Het |
| Clock |
A |
G |
5: 76,413,683 (GRCm39) |
S71P |
probably benign |
Het |
| Cops6 |
A |
G |
5: 138,161,842 (GRCm39) |
T96A |
probably benign |
Het |
| Csnka2ip |
A |
T |
16: 64,298,975 (GRCm39) |
V19D |
probably damaging |
Het |
| Dcaf17 |
T |
A |
2: 70,917,744 (GRCm39) |
|
probably null |
Het |
| Dscam |
T |
C |
16: 96,573,608 (GRCm39) |
K785E |
probably benign |
Het |
| Eif2d |
T |
A |
1: 131,083,465 (GRCm39) |
|
probably benign |
Het |
| Gal3st2b |
T |
C |
1: 93,868,549 (GRCm39) |
V258A |
probably benign |
Het |
| Gucy2c |
T |
C |
6: 136,705,333 (GRCm39) |
N534S |
probably damaging |
Het |
| Hook1 |
C |
T |
4: 95,887,023 (GRCm39) |
T210I |
possibly damaging |
Het |
| Ifi203 |
T |
C |
1: 173,756,215 (GRCm39) |
|
probably benign |
Het |
| Lrp2 |
C |
T |
2: 69,297,350 (GRCm39) |
V3204I |
probably benign |
Het |
| Mtx2 |
A |
G |
2: 74,699,780 (GRCm39) |
|
probably benign |
Het |
| Nelfcd |
G |
T |
2: 174,265,223 (GRCm39) |
V248L |
probably benign |
Het |
| Oosp1 |
T |
C |
19: 11,645,776 (GRCm39) |
S121G |
probably benign |
Het |
| Or10am5 |
T |
A |
7: 6,517,808 (GRCm39) |
N207Y |
probably benign |
Het |
| Sec16b |
G |
C |
1: 157,359,718 (GRCm39) |
G164R |
probably benign |
Het |
| Slc22a14 |
T |
A |
9: 118,998,919 (GRCm39) |
D561V |
probably benign |
Het |
| Tet2 |
G |
A |
3: 133,193,870 (GRCm39) |
T188I |
probably benign |
Het |
| Tex10 |
C |
T |
4: 48,456,800 (GRCm39) |
R637Q |
probably benign |
Het |
| Trp53bp1 |
A |
G |
2: 121,101,009 (GRCm39) |
V63A |
possibly damaging |
Het |
| Ube2d2a |
T |
G |
18: 35,903,438 (GRCm39) |
|
probably benign |
Het |
| Vmn1r113 |
T |
A |
7: 20,521,388 (GRCm39) |
V60E |
probably damaging |
Het |
|
| Other mutations in Irf7 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00334:Irf7
|
APN |
7 |
140,844,553 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL03275:Irf7
|
APN |
7 |
140,845,059 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Houstonian
|
UTSW |
7 |
140,843,935 (GRCm39) |
missense |
probably damaging |
0.99 |
|
inept
|
UTSW |
7 |
140,845,053 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1339:Irf7
|
UTSW |
7 |
140,843,617 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1442:Irf7
|
UTSW |
7 |
140,843,935 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4354:Irf7
|
UTSW |
7 |
140,845,183 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4724:Irf7
|
UTSW |
7 |
140,844,648 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R5444:Irf7
|
UTSW |
7 |
140,844,732 (GRCm39) |
unclassified |
probably benign |
|
|
R5795:Irf7
|
UTSW |
7 |
140,845,029 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7444:Irf7
|
UTSW |
7 |
140,843,599 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7535:Irf7
|
UTSW |
7 |
140,844,550 (GRCm39) |
missense |
probably benign |
0.10 |
|
R8357:Irf7
|
UTSW |
7 |
140,843,194 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R8457:Irf7
|
UTSW |
7 |
140,843,194 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R8683:Irf7
|
UTSW |
7 |
140,843,422 (GRCm39) |
missense |
probably null |
1.00 |
|
R9166:Irf7
|
UTSW |
7 |
140,844,666 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGCCCAAGCAGTTCCAAAAGTTCTC -3'
(R):5'- ACCCTGGAAGCATTTCGGTCGTAG -3'
Sequencing Primer
(F):5'- AGCAGTTCCAAAAGTTCTCTATTTC -3'
(R):5'- CCACCTAGTGGAGTTAACCTG -3'
|
| Posted On |
2013-07-11 |
Incidental Mutation