Incidental Mutation 'R7203:Ly75'
ID 560744
Institutional Source Beutler Lab
Gene Symbol Ly75
Ensembl Gene ENSMUSG00000026980
Gene Name lymphocyte antigen 75
Synonyms DEC-205, CD205
MMRRC Submission 045281-MU
Accession Numbers

Genbank: NM_013825

Essential gene? Non essential (E-score: 0.000) question?
Stock # R7203 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 60292103-60383303 bp(-) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) G to A at 60323852 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Stop codon at position 1084 (R1084*)
Ref Sequence ENSEMBL: ENSMUSP00000028362 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028362] [ENSMUST00000112533]
AlphaFold Q60767
Predicted Effect probably null
Transcript: ENSMUST00000028362
AA Change: R1084*
SMART Domains Protein: ENSMUSP00000028362
Gene: ENSMUSG00000026980
AA Change: R1084*

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000112533
AA Change: R1084*
SMART Domains Protein: ENSMUSP00000108152
Gene: ENSMUSG00000026980
AA Change: R1084*

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency 100% (108/108)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele display abnormalities in CD8-positive T cell morphology and cytotoxic T cell physiology. [provided by MGI curators]
Allele List at MGI

All alleles(7) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(5)

Other mutations in this stock
Total: 108 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930544G11Rik T C 6: 65,953,333 (GRCm38) V184A probably benign Het
4932415D10Rik G A 10: 82,293,414 (GRCm38) T1254I probably benign Het
Aars2 A G 17: 45,516,571 (GRCm38) Y513C probably damaging Het
Ackr2 G A 9: 121,908,967 (GRCm38) C136Y probably damaging Het
Aldh1l1 A G 6: 90,570,800 (GRCm38) K414R probably benign Het
Arl9 A G 5: 77,007,271 (GRCm38) Y83C possibly damaging Het
Atp10a G T 7: 58,786,473 (GRCm38) R337L probably benign Het
Atp6v1g3 A T 1: 138,287,800 (GRCm38) Q66L probably damaging Het
Atp7b A T 8: 21,997,335 (GRCm38) N1321K probably damaging Het
Axdnd1 A T 1: 156,382,389 (GRCm38) M437K probably damaging Het
Bap1 C A 14: 31,254,169 (GRCm38) P147Q probably damaging Het
Bicd1 C T 6: 149,512,905 (GRCm38) T372I possibly damaging Het
Brix1 T C 15: 10,483,292 (GRCm38) probably null Het
Btrc A G 19: 45,513,528 (GRCm38) probably null Het
C130050O18Rik A C 5: 139,414,374 (GRCm38) I61L probably benign Het
Cfap161 A G 7: 83,776,050 (GRCm38) S278P probably damaging Het
Cgnl1 T C 9: 71,724,533 (GRCm38) D512G possibly damaging Het
Chat T C 14: 32,419,057 (GRCm38) D461G probably damaging Het
Chl1 T A 6: 103,691,674 (GRCm38) V456D probably benign Het
Cib1 T C 7: 80,232,372 (GRCm38) T20A possibly damaging Het
Cubn T G 2: 13,351,003 (GRCm38) H1806P probably benign Het
Dapk1 T A 13: 60,696,335 (GRCm38) V56E possibly damaging Het
Dennd4a A G 9: 64,896,474 (GRCm38) N1032D probably benign Het
Dlg5 T A 14: 24,138,655 (GRCm38) E1756V probably damaging Het
Dnah1 T C 14: 31,274,382 (GRCm38) T2666A probably benign Het
Dnah11 A T 12: 118,045,522 (GRCm38) I2135N possibly damaging Het
Dnah6 T A 6: 73,173,545 (GRCm38) E745V probably benign Het
Dock8 A T 19: 25,181,563 (GRCm38) N1695I probably damaging Het
Esf1 C T 2: 140,164,219 (GRCm38) R336Q possibly damaging Het
Fam161a A G 11: 23,021,664 (GRCm38) probably null Het
Fam89a T C 8: 124,751,679 (GRCm38) E44G possibly damaging Het
Fndc3b A T 3: 27,456,485 (GRCm38) D829E probably benign Het
Fxr1 C T 3: 34,046,540 (GRCm38) T125I possibly damaging Het
Gfer T C 17: 24,695,862 (GRCm38) D69G probably damaging Het
Gm16486 A T 8: 70,716,948 (GRCm38) E1229V probably benign Het
Gm2000 A T 1: 156,366,087 (GRCm38) I4F probably damaging Het
Gpatch2l T A 12: 86,288,937 (GRCm38) S471T probably benign Het
Grm7 T G 6: 111,358,569 (GRCm38) I647S possibly damaging Het
Gsn A G 2: 35,298,795 (GRCm38) I447V probably benign Het
H2al2c C T Y: 2,599,234 (GRCm38) L46F possibly damaging Het
Hao2 A C 3: 98,877,282 (GRCm38) probably null Het
Ifitm10 T C 7: 142,328,568 (GRCm38) E155G probably benign Het
Igkv8-16 C A 6: 70,386,810 (GRCm38) W76L probably benign Het
Igsf21 A T 4: 140,107,337 (GRCm38) F75I possibly damaging Het
Ints14 T A 9: 64,964,419 (GRCm38) M13K probably damaging Het
Ipmk A T 10: 71,363,468 (GRCm38) D53V possibly damaging Het
Itga8 A G 2: 12,230,095 (GRCm38) F451L possibly damaging Het
Jup A G 11: 100,381,734 (GRCm38) F284S probably damaging Het
Kctd5 T C 17: 24,073,235 (GRCm38) D65G probably benign Het
Klrc1 A T 6: 129,677,221 (GRCm38) S148T probably benign Het
Kmt5b A G 19: 3,814,147 (GRCm38) K404E probably damaging Het
Krt9 A C 11: 100,190,791 (GRCm38) M304R probably damaging Het
Krtap5-1 A T 7: 142,296,562 (GRCm38) S143T unknown Het
Kyat3 A G 3: 142,720,401 (GRCm38) N68D probably damaging Het
Kynu A G 2: 43,681,353 (GRCm38) D427G probably damaging Het
Leo1 A G 9: 75,445,996 (GRCm38) probably null Het
Loxhd1 A G 18: 77,414,196 (GRCm38) D1737G probably damaging Het
Lpo C A 11: 87,809,251 (GRCm38) L521F possibly damaging Het
Lrrk1 A G 7: 66,270,825 (GRCm38) S1477P probably damaging Het
Lrrtm1 C A 6: 77,243,601 (GRCm38) L14M probably damaging Het
Mcf2l A G 8: 13,010,456 (GRCm38) D764G probably benign Het
Mrgprd A T 7: 145,322,349 (GRCm38) D319V probably benign Het
Mut A T 17: 40,938,673 (GRCm38) M180L probably benign Het
Myom3 T C 4: 135,795,179 (GRCm38) L897P possibly damaging Het
Ncapd2 A T 6: 125,184,328 (GRCm38) M247K possibly damaging Het
Nlrp2 T C 7: 5,317,534 (GRCm38) D868G probably damaging Het
Npy6r A G 18: 44,275,932 (GRCm38) N140S probably damaging Het
Nsmce4a T C 7: 130,539,872 (GRCm38) K196E probably benign Het
Nup88 T C 11: 70,945,254 (GRCm38) K532R probably benign Het
Olfr424 T A 1: 174,137,114 (GRCm38) Y123* probably null Het
Olfr947-ps1 A T 9: 39,289,293 (GRCm38) I199N unknown Het
Olfr974 T A 9: 39,942,509 (GRCm38) V83E probably benign Het
Pbxip1 A T 3: 89,447,428 (GRCm38) D418V possibly damaging Het
Pde2a C A 7: 101,509,944 (GRCm38) R761S possibly damaging Het
Phf10 A T 17: 14,946,313 (GRCm38) C432S probably damaging Het
Pitpnm2 T C 5: 124,121,459 (GRCm38) D1271G probably damaging Het
Plin1 A T 7: 79,723,444 (GRCm38) L259Q probably damaging Het
Pmpca G C 2: 26,395,034 (GRCm38) E424Q possibly damaging Het
Pou6f2 T A 13: 18,239,794 (GRCm38) Q132L unknown Het
Ppa2 A T 3: 133,330,438 (GRCm38) N118Y possibly damaging Het
Prickle2 T C 6: 92,410,978 (GRCm38) E537G possibly damaging Het
Prl3d1 A G 13: 27,098,701 (GRCm38) I141V possibly damaging Het
Prl8a1 A T 13: 27,574,189 (GRCm38) V179D probably damaging Het
Prr14l A G 5: 32,827,145 (GRCm38) F1669L probably benign Het
Prrg4 T A 2: 104,839,442 (GRCm38) E110V possibly damaging Het
Rfx5 C A 3: 94,958,876 (GRCm38) H495Q unknown Het
Rgl2 C T 17: 33,933,429 (GRCm38) R367W probably damaging Het
Rpe65 A G 3: 159,622,854 (GRCm38) Y433C probably damaging Het
Rtn4rl1 C T 11: 75,265,750 (GRCm38) S336F possibly damaging Het
Scn2a A G 2: 65,748,319 (GRCm38) D1446G probably benign Het
Sdk1 C A 5: 142,046,176 (GRCm38) T1002K probably benign Het
Slc9b2 T C 3: 135,330,661 (GRCm38) S409P probably benign Het
Sowahc A G 10: 59,222,278 (GRCm38) T79A probably benign Het
Stk35 T A 2: 129,801,593 (GRCm38) C166S probably benign Het
Tarbp2 A G 15: 102,522,487 (GRCm38) H225R probably benign Het
Tdrd12 T A 7: 35,489,223 (GRCm38) K530* probably null Het
Terf2ip A G 8: 112,017,986 (GRCm38) I312V probably benign Het
Tgfb1 T C 7: 25,692,539 (GRCm38) probably null Het
Thbs2 T C 17: 14,671,458 (GRCm38) D939G probably damaging Het
Ube4b A T 4: 149,398,610 (GRCm38) I67K probably benign Het
Ubn1 G T 16: 5,077,216 (GRCm38) V709F possibly damaging Het
Ugt2b5 T C 5: 87,128,399 (GRCm38) K339E possibly damaging Het
Vax2 T C 6: 83,737,900 (GRCm38) S266P probably damaging Het
Vmn2r108 A G 17: 20,462,776 (GRCm38) I722T probably benign Het
Vmn2r95 A G 17: 18,441,315 (GRCm38) K441R probably benign Het
Wapl C A 14: 34,736,691 (GRCm38) D903E probably benign Het
Wee1 T A 7: 110,134,794 (GRCm38) V442D probably benign Het
Zan T C 5: 137,434,096 (GRCm38) N2313S unknown Het
Other mutations in Ly75
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00561:Ly75 APN 2 60,376,077 (GRCm38) missense probably damaging 1.00
IGL01072:Ly75 APN 2 60,354,496 (GRCm38) missense probably damaging 1.00
IGL01409:Ly75 APN 2 60,321,692 (GRCm38) splice site probably null
IGL01432:Ly75 APN 2 60,376,007 (GRCm38) missense probably damaging 1.00
IGL01626:Ly75 APN 2 60,301,015 (GRCm38) missense probably benign 0.13
IGL01690:Ly75 APN 2 60,338,311 (GRCm38) missense probably damaging 1.00
IGL01862:Ly75 APN 2 60,299,172 (GRCm38) missense probably damaging 1.00
IGL01982:Ly75 APN 2 60,311,764 (GRCm38) missense probably damaging 1.00
IGL02075:Ly75 APN 2 60,352,356 (GRCm38) missense probably damaging 0.99
IGL02338:Ly75 APN 2 60,354,452 (GRCm38) missense probably benign 0.04
IGL02364:Ly75 APN 2 60,358,507 (GRCm38) missense probably damaging 1.00
IGL02456:Ly75 APN 2 60,293,781 (GRCm38) missense probably benign 0.09
IGL02474:Ly75 APN 2 60,383,182 (GRCm38) missense probably null 1.00
IGL02608:Ly75 APN 2 60,321,900 (GRCm38) missense probably benign 0.41
IGL02986:Ly75 APN 2 60,308,191 (GRCm38) missense probably damaging 1.00
IGL03015:Ly75 APN 2 60,376,160 (GRCm38) missense probably damaging 1.00
IGL03049:Ly75 APN 2 60,352,070 (GRCm38) missense probably damaging 0.99
euphues UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
four_score UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
lyly UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
Witty UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
D605:Ly75 UTSW 2 60,352,352 (GRCm38) critical splice donor site probably null
R0046:Ly75 UTSW 2 60,339,457 (GRCm38) intron probably benign
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0285:Ly75 UTSW 2 60,318,319 (GRCm38) missense probably damaging 1.00
R0387:Ly75 UTSW 2 60,306,404 (GRCm38) missense probably benign 0.20
R0492:Ly75 UTSW 2 60,308,276 (GRCm38) missense probably damaging 1.00
R0688:Ly75 UTSW 2 60,316,221 (GRCm38) missense probably benign 0.41
R1367:Ly75 UTSW 2 60,293,758 (GRCm38) splice site probably null
R1463:Ly75 UTSW 2 60,368,757 (GRCm38) critical splice donor site probably null
R1581:Ly75 UTSW 2 60,327,893 (GRCm38) missense probably damaging 1.00
R1663:Ly75 UTSW 2 60,314,234 (GRCm38) missense probably damaging 1.00
R1818:Ly75 UTSW 2 60,311,777 (GRCm38) missense probably damaging 1.00
R1881:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R2244:Ly75 UTSW 2 60,349,913 (GRCm38) missense probably benign 0.01
R2905:Ly75 UTSW 2 60,334,554 (GRCm38) missense probably benign 0.00
R3967:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R3968:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R4039:Ly75 UTSW 2 60,352,995 (GRCm38) missense probably damaging 1.00
R4406:Ly75 UTSW 2 60,354,550 (GRCm38) missense probably damaging 1.00
R4526:Ly75 UTSW 2 60,330,773 (GRCm38) missense probably benign 0.09
R4647:Ly75 UTSW 2 60,308,278 (GRCm38) missense probably damaging 1.00
R4795:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4796:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4962:Ly75 UTSW 2 60,352,125 (GRCm38) missense probably damaging 1.00
R4979:Ly75 UTSW 2 60,375,894 (GRCm38) missense probably damaging 1.00
R5072:Ly75 UTSW 2 60,375,963 (GRCm38) missense probably damaging 1.00
R5288:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5373:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5374:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5384:Ly75 UTSW 2 60,334,487 (GRCm38) nonsense probably null
R5385:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5395:Ly75 UTSW 2 60,365,111 (GRCm38) missense probably benign 0.41
R5531:Ly75 UTSW 2 60,365,145 (GRCm38) missense probably damaging 0.98
R5662:Ly75 UTSW 2 60,352,381 (GRCm38) missense probably damaging 1.00
R5667:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5668:Ly75 UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
R5671:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5677:Ly75 UTSW 2 60,299,082 (GRCm38) missense probably benign 0.00
R5764:Ly75 UTSW 2 60,318,439 (GRCm38) missense probably benign
R5896:Ly75 UTSW 2 60,383,146 (GRCm38) missense probably benign
R6025:Ly75 UTSW 2 60,375,962 (GRCm38) missense probably damaging 1.00
R6113:Ly75 UTSW 2 60,368,873 (GRCm38) missense probably benign 0.04
R6448:Ly75 UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
R6601:Ly75 UTSW 2 60,318,376 (GRCm38) missense probably benign 0.11
R6745:Ly75 UTSW 2 60,308,179 (GRCm38) missense probably damaging 1.00
R6955:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R6960:Ly75 UTSW 2 60,306,405 (GRCm38) missense probably benign
R7100:Ly75 UTSW 2 60,306,434 (GRCm38) missense probably benign
R7110:Ly75 UTSW 2 60,376,184 (GRCm38) missense probably benign 0.31
R7291:Ly75 UTSW 2 60,329,993 (GRCm38) missense probably damaging 0.98
R7308:Ly75 UTSW 2 60,334,515 (GRCm38) missense probably benign 0.04
R7447:Ly75 UTSW 2 60,334,474 (GRCm38) nonsense probably null
R7512:Ly75 UTSW 2 60,334,563 (GRCm38) missense probably damaging 1.00
R7595:Ly75 UTSW 2 60,293,827 (GRCm38) missense probably benign 0.01
R7976:Ly75 UTSW 2 60,365,088 (GRCm38) missense probably damaging 1.00
R8005:Ly75 UTSW 2 60,332,934 (GRCm38) missense probably damaging 1.00
R8171:Ly75 UTSW 2 60,314,228 (GRCm38) missense possibly damaging 0.51
R8392:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R8705:Ly75 UTSW 2 60,318,385 (GRCm38) missense probably damaging 0.98
R8714:Ly75 UTSW 2 60,334,485 (GRCm38) missense probably damaging 1.00
R8798:Ly75 UTSW 2 60,323,926 (GRCm38) missense probably benign 0.32
R8799:Ly75 UTSW 2 60,348,441 (GRCm38) missense probably damaging 1.00
R8834:Ly75 UTSW 2 60,331,089 (GRCm38) missense probably benign
R8990:Ly75 UTSW 2 60,358,559 (GRCm38) missense probably benign 0.10
R9015:Ly75 UTSW 2 60,316,098 (GRCm38) missense probably benign
R9547:Ly75 UTSW 2 60,330,725 (GRCm38) critical splice donor site probably null
R9628:Ly75 UTSW 2 60,327,941 (GRCm38) missense probably damaging 1.00
R9659:Ly75 UTSW 2 60,338,321 (GRCm38) missense probably damaging 1.00
R9660:Ly75 UTSW 2 60,323,840 (GRCm38) missense probably damaging 1.00
R9747:Ly75 UTSW 2 60,306,328 (GRCm38) critical splice donor site probably null
X0025:Ly75 UTSW 2 60,354,475 (GRCm38) missense probably damaging 1.00
Z1177:Ly75 UTSW 2 60,352,133 (GRCm38) missense possibly damaging 0.65
Z1177:Ly75 UTSW 2 60,350,004 (GRCm38) nonsense probably null
Predicted Primers PCR Primer
(F):5'- AATCCCATGTATAGACCTGGCC -3'
(R):5'- TAGGTCTCAAATGTCCGTCATG -3'

Sequencing Primer
(F):5'- ATGTATAGACCTGGCCAGTGCTC -3'
(R):5'- GGTCTCAAATGTCCGTCATGTTTCTG -3'
Posted On 2019-06-26