Mutagenetix > Incidental Mutation

Incidental Mutation 'R7210:Gatb'

560982

Institutional Source

Beutler Lab

Gene Symbol

Gatb

Ensembl Gene

ENSMUSG00000028085

Gene Name

glutamyl-tRNA(Gln) amidotransferase, subunit B

Synonyms

Pet112, Pet112l, 9430026F02Rik

MMRRC Submission

045239-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.963) question?

Stock #

R7210 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

85574119-85655622 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 85574220 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 26 (H26R)

Ref Sequence

ENSEMBL: ENSMUSP00000119949 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107672] [ENSMUST00000107674] [ENSMUST00000127348] [ENSMUST00000154148]

AlphaFold

Q99JT1

Predicted Effect

probably benign
Transcript: ENSMUST00000107672
AA Change: H26R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000103299
Gene: ENSMUSG00000028085
AA Change: H26R

Domain	Start	End	E-Value	Type
Pfam:GatB_N	65	353	8.3e-103	PFAM
Pfam:GatB_Yqey	406	472	6.3e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107674
AA Change: H26R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000103301
Gene: ENSMUSG00000028085
AA Change: H26R

Domain	Start	End	E-Value	Type
Pfam:GatB_N	64	354	6.7e-105	PFAM
GatB_Yqey	406	518	2.09e-22	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000127348
AA Change: H26R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000119949
Gene: ENSMUSG00000028085
AA Change: H26R

Domain	Start	End	E-Value	Type
Pfam:GatB_N	65	353	8.3e-101	PFAM
GatB_Yqey	406	555	4.13e-53	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000154148

SMART Domains

Protein: ENSMUSP00000116393
Gene: ENSMUSG00000102805

Domain	Start	End	E-Value	Type
Arfaptin	1	227	7.15e-121	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (60/60)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc3	G	A	11: 94,373,941 (GRCm38)	P194S	probably benign	Het
Ackr2	C	T	9: 121,908,877 (GRCm38)	A106V	possibly damaging	Het
Alg3	G	A	16: 20,605,894 (GRCm38)	P112L	unknown	Het
Areg	T	A	5: 91,140,905 (GRCm38)	Y23*	probably null	Het
Aspn	A	G	13: 49,566,491 (GRCm38)	T328A	probably benign	Het
B020011L13Rik	A	T	1: 117,801,511 (GRCm38)	E249D	possibly damaging	Het
Bptf	G	A	11: 107,054,464 (GRCm38)	Q2650*	probably null	Het
Btbd3	A	T	2: 138,283,744 (GRCm38)	R283W	probably damaging	Het
Cep131	T	C	11: 120,064,789 (GRCm38)	H1035R	probably damaging	Het
Cfap57	A	T	4: 118,576,703 (GRCm38)	Y959*	probably null	Het
Cnot1	T	C	8: 95,788,658 (GRCm38)	Y25C	probably damaging	Het
Crebbp	G	A	16: 4,084,257 (GRCm38)	H2373Y	possibly damaging	Het
Ctnna3	T	C	10: 64,250,768 (GRCm38)	L373P	probably damaging	Het
Cyp8b1	T	A	9: 121,915,180 (GRCm38)	D362V	probably damaging	Het
D630003M21Rik	T	A	2: 158,216,012 (GRCm38)		probably null	Het
Dpp6	T	C	5: 27,598,803 (GRCm38)	I249T	probably damaging	Het
Fam149b	T	G	14: 20,378,472 (GRCm38)	I475M	probably damaging	Het
Fat1	A	G	8: 45,023,503 (GRCm38)	Y1862C	probably damaging	Het
Fcrl5	A	T	3: 87,446,412 (GRCm38)	N355Y	possibly damaging	Het
Fgd6	C	T	10: 94,134,092 (GRCm38)	T1201I	probably damaging	Het
Fndc8	A	T	11: 82,897,866 (GRCm38)	D174V	probably damaging	Het
Gm37240	T	A	3: 84,497,807 (GRCm38)	T230S	probably benign	Het
Gria4	T	C	9: 4,464,135 (GRCm38)	Q609R	probably damaging	Het
Gse1	C	A	8: 120,230,702 (GRCm38)	T644K	unknown	Het
Ifit1bl1	T	G	19: 34,594,164 (GRCm38)	I298L	probably benign	Het
Il31ra	T	C	13: 112,549,500 (GRCm38)	D85G	possibly damaging	Het
Katnip	T	C	7: 125,872,239 (GRCm38)	V1504A	probably damaging	Het
Lyst	T	C	13: 13,656,983 (GRCm38)	L1664P	probably damaging	Het
Mrpl35	A	G	6: 71,817,738 (GRCm38)	L82S	possibly damaging	Het
Myo7b	G	A	18: 32,007,102 (GRCm38)	R212C	probably damaging	Het
Myom2	T	C	8: 15,104,114 (GRCm38)	V684A	probably damaging	Het
Nbeal1	G	C	1: 60,237,151 (GRCm38)	V684L	probably benign	Het
Nop58	G	T	1: 59,710,380 (GRCm38)		probably null	Het
Nudt13	T	A	14: 20,309,784 (GRCm38)	I193N	possibly damaging	Het
Nyap1	C	A	5: 137,737,982 (GRCm38)	R81L	probably damaging	Het
Or1e28-ps1	T	C	11: 73,724,873 (GRCm38)	I50M	possibly damaging	Het
Oxct2b	A	C	4: 123,116,276 (GRCm38)		probably benign	Het
Pcf11	C	T	7: 92,663,476 (GRCm38)	A230T	probably benign	Het
Phactr4	A	T	4: 132,358,271 (GRCm38)	*695R	probably null	Het
Pkd1	T	C	17: 24,575,866 (GRCm38)	S2176P	probably damaging	Het
Plch2	C	A	4: 155,009,086 (GRCm38)	R133L	probably damaging	Het
Ptprq	G	T	10: 107,685,171 (GRCm38)	N713K	probably damaging	Het
Ptrh2	A	T	11: 86,689,967 (GRCm38)	T137S	probably benign	Het
R3hdm1	A	G	1: 128,211,208 (GRCm38)	Y718C	possibly damaging	Het
Rftn1	T	A	17: 49,994,307 (GRCm38)	R505*	probably null	Het
Rps15a	A	G	7: 118,109,111 (GRCm38)	F128L	probably benign	Het
Slc25a25	A	T	2: 32,420,396 (GRCm38)	M177K	possibly damaging	Het
Smgc	C	A	15: 91,860,294 (GRCm38)	P631Q	probably damaging	Het
Sox2	T	C	3: 34,651,157 (GRCm38)	S248P	probably damaging	Het
Sycp1	T	C	3: 102,853,492 (GRCm38)	K702E	probably damaging	Het
Tes	G	T	6: 17,104,762 (GRCm38)	C414F	probably damaging	Het
Tet1	A	T	10: 62,814,501 (GRCm38)	C14S	probably null	Het
Tle3	C	T	9: 61,412,305 (GRCm38)	P452S	probably damaging	Het
Tmc6	A	C	11: 117,775,844 (GRCm38)	L131R	possibly damaging	Het
Tnip3	C	T	6: 65,593,511 (GRCm38)	R30*	probably null	Het
Tnrc6b	G	T	15: 80,929,285 (GRCm38)	G1748W	probably damaging	Het
Ugt2b38	T	G	5: 87,410,425 (GRCm38)	D459A	probably damaging	Het
Zdhhc2	A	T	8: 40,467,439 (GRCm38)	R246S	probably damaging	Het
Zscan22	T	A	7: 12,906,821 (GRCm38)	C331S	probably damaging	Het

Other mutations in Gatb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Gatb	APN	3	85,601,920 (GRCm38)	missense	possibly damaging	0.95
IGL00963:Gatb	APN	3	85,618,948 (GRCm38)	missense	probably benign	0.00
IGL01363:Gatb	APN	3	85,652,345 (GRCm38)	missense	probably damaging	1.00
IGL01650:Gatb	APN	3	85,613,484 (GRCm38)	missense	possibly damaging	0.68
IGL01973:Gatb	APN	3	85,611,424 (GRCm38)	missense	probably damaging	1.00
IGL02195:Gatb	APN	3	85,604,448 (GRCm38)	missense	probably benign	0.00
IGL02670:Gatb	APN	3	85,613,551 (GRCm38)	splice site	probably null
IGL02992:Gatb	APN	3	85,618,916 (GRCm38)	missense	probably damaging	1.00
IGL03025:Gatb	APN	3	85,575,874 (GRCm38)	missense	probably damaging	0.99
IGL03035:Gatb	APN	3	85,601,947 (GRCm38)	missense	probably damaging	1.00
IGL03090:Gatb	APN	3	85,619,023 (GRCm38)	intron	probably benign
R1313:Gatb	UTSW	3	85,653,826 (GRCm38)	missense	probably benign	0.01
R1851:Gatb	UTSW	3	85,618,877 (GRCm38)	missense	probably damaging	0.99
R1852:Gatb	UTSW	3	85,618,877 (GRCm38)	missense	probably damaging	0.99
R2134:Gatb	UTSW	3	85,611,370 (GRCm38)	missense	probably damaging	1.00
R2209:Gatb	UTSW	3	85,653,805 (GRCm38)	missense	probably benign	0.03
R5189:Gatb	UTSW	3	85,636,931 (GRCm38)	missense	probably benign	0.00
R5218:Gatb	UTSW	3	85,604,444 (GRCm38)	missense	probably benign
R5857:Gatb	UTSW	3	85,575,932 (GRCm38)	missense	probably damaging	1.00
R5871:Gatb	UTSW	3	85,653,776 (GRCm38)	nonsense	probably null
R6031:Gatb	UTSW	3	85,613,511 (GRCm38)	missense	possibly damaging	0.82
R6031:Gatb	UTSW	3	85,613,511 (GRCm38)	missense	possibly damaging	0.82
R6430:Gatb	UTSW	3	85,637,038 (GRCm38)	missense	probably benign	0.01
R6661:Gatb	UTSW	3	85,652,419 (GRCm38)	splice site	probably null
R7184:Gatb	UTSW	3	85,636,951 (GRCm38)	nonsense	probably null
R7501:Gatb	UTSW	3	85,636,990 (GRCm38)	missense	probably damaging	0.99
R7919:Gatb	UTSW	3	85,604,521 (GRCm38)	missense	probably damaging	1.00
R8335:Gatb	UTSW	3	85,574,321 (GRCm38)	critical splice donor site	probably null
R8536:Gatb	UTSW	3	85,604,561 (GRCm38)	missense	probably damaging	0.99
R8867:Gatb	UTSW	3	85,604,409 (GRCm38)	missense	probably damaging	1.00
R9312:Gatb	UTSW	3	85,653,763 (GRCm38)	missense	probably damaging	1.00
R9330:Gatb	UTSW	3	85,652,494 (GRCm38)	missense	probably benign	0.03
X0013:Gatb	UTSW	3	85,601,861 (GRCm38)	missense	probably damaging	1.00
Z1177:Gatb	UTSW	3	85,636,973 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTTCCGGTCAAGAGCTACAC -3'
(R):5'- TTGCCCATAACACAGGTGAC -3'

Sequencing Primer
(F):5'- TCAAGAGCTACACGGGTTG -3'
(R):5'- CACTAAAACCCTCAGGCTGG -3'

Posted On

2019-06-26