Incidental Mutation 'R7221:Cnbd2'
ID 561793
Institutional Source Beutler Lab
Gene Symbol Cnbd2
Ensembl Gene ENSMUSG00000038085
Gene Name cyclic nucleotide binding domain containing 2
Synonyms 4921517L17Rik, 5430421B09Rik
MMRRC Submission 045293-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R7221 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 156154219-156217558 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 156215581 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Leucine at position 519 (F519L)
Ref Sequence ENSEMBL: ENSMUSP00000041268 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037096] [ENSMUST00000109580]
AlphaFold Q9D5U8
Predicted Effect probably benign
Transcript: ENSMUST00000037096
AA Change: F519L

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000041268
Gene: ENSMUSG00000038085
AA Change: F519L

DomainStartEndE-ValueType
low complexity region 45 68 N/A INTRINSIC
cNMP 206 332 1.78e-7 SMART
Blast:cNMP 376 443 4e-19 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000109580
AA Change: F390L

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000105208
Gene: ENSMUSG00000038085
AA Change: F390L

DomainStartEndE-ValueType
cNMP 77 203 1.78e-7 SMART
Blast:cNMP 247 314 3e-19 BLAST
Meta Mutation Damage Score 0.0719 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency 100% (77/77)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced male fertility associated with impaired spermiogenesis and development of flagellum bending. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm1 A G 3: 59,836,354 (GRCm39) probably benign Het
Abr A C 11: 76,313,987 (GRCm39) M720R probably benign Het
Acad10 G A 5: 121,768,273 (GRCm39) T761M probably damaging Het
Agxt G T 1: 93,065,623 (GRCm39) G164V possibly damaging Het
Ankar C T 1: 72,689,390 (GRCm39) G1247D probably damaging Het
Bptf A C 11: 106,945,658 (GRCm39) L2527R probably damaging Het
Brinp2 T C 1: 158,094,117 (GRCm39) H195R possibly damaging Het
Cacna2d4 G T 6: 119,213,624 (GRCm39) R14S probably benign Het
Cep126 A T 9: 8,100,988 (GRCm39) C515* probably null Het
Chia1 A T 3: 106,039,236 (GRCm39) N442I probably damaging Het
Clasp2 A G 9: 113,681,825 (GRCm39) D327G probably damaging Het
Cntrl T A 2: 35,041,869 (GRCm39) F1214I possibly damaging Het
Cul9 A T 17: 46,839,491 (GRCm39) M829K probably damaging Het
Cyp4b1 T C 4: 115,493,175 (GRCm39) Q223R possibly damaging Het
Defb37 A T 8: 19,040,988 (GRCm39) M1K probably null Het
Dnah7c A T 1: 46,494,937 (GRCm39) Q55L possibly damaging Het
Efcab3 A G 11: 104,791,432 (GRCm39) N2882S probably benign Het
Eif2b4 A T 5: 31,345,131 (GRCm39) D463E possibly damaging Het
Elapor1 T G 3: 108,382,317 (GRCm39) D232A possibly damaging Het
Elovl1 C T 4: 118,288,811 (GRCm39) H167Y probably damaging Het
Emb T A 13: 117,404,013 (GRCm39) L255Q probably damaging Het
Eogt T C 6: 97,089,685 (GRCm39) Y465C probably damaging Het
Erc2 A G 14: 27,375,115 (GRCm39) H111R probably damaging Het
Fam234b T C 6: 135,205,529 (GRCm39) F498S probably damaging Het
Fgfr3 GAGGCTGGCAGCGTGTACGCAGGC GAGGC 5: 33,890,092 (GRCm39) probably null Het
Flrt3 T A 2: 140,503,090 (GRCm39) E179D probably damaging Het
Fndc3a T C 14: 72,793,597 (GRCm39) R993G probably benign Het
Gm14325 T C 2: 177,476,403 (GRCm39) T14A probably damaging Het
Gm5464 T A 14: 67,106,681 (GRCm39) V106D unknown Het
Gpatch11 T A 17: 79,149,546 (GRCm39) I182N possibly damaging Het
Grm6 A G 11: 50,753,870 (GRCm39) R725G probably damaging Het
Hap1 A T 11: 100,239,655 (GRCm39) M588K probably benign Het
Icam2 A G 11: 106,273,268 (GRCm39) F15L probably benign Het
Ints8 A G 4: 11,225,613 (GRCm39) M648T probably benign Het
Ipo11 A T 13: 107,029,065 (GRCm39) L296Q probably damaging Het
Kirrel1 G A 3: 86,993,704 (GRCm39) Q518* probably null Het
Krt18 G T 15: 101,937,967 (GRCm39) D155Y possibly damaging Het
Lctl A T 9: 64,026,217 (GRCm39) K91* probably null Het
Marf1 C A 16: 13,960,349 (GRCm39) R565L probably damaging Het
Med13 A T 11: 86,178,921 (GRCm39) D1458E probably benign Het
Mroh8 T A 2: 157,071,837 (GRCm39) Y556F probably benign Het
Muc16 C T 9: 18,553,495 (GRCm39) G4266D probably benign Het
Nsrp1 A T 11: 76,939,249 (GRCm39) F182I probably damaging Het
Obox3 A T 7: 15,359,983 (GRCm39) Y229N probably benign Het
Or11h7 A T 14: 50,891,528 (GRCm39) Y278F probably damaging Het
Or2b2 T C 13: 21,887,272 (GRCm39) S34P probably damaging Het
Or2b4 A G 17: 38,116,452 (GRCm39) K139E probably benign Het
Or4a74 T C 2: 89,440,272 (GRCm39) Y58C probably damaging Het
Or4c108 A G 2: 88,803,497 (GRCm39) V246A probably damaging Het
Or4p22 T A 2: 88,317,973 (GRCm39) V299D probably damaging Het
Or8d1 A G 9: 38,766,538 (GRCm39) Y60C probably damaging Het
Pabpc2 T A 18: 39,906,963 (GRCm39) V76D possibly damaging Het
Parp9 T C 16: 35,774,071 (GRCm39) W348R probably benign Het
Pdp1 T C 4: 11,961,004 (GRCm39) T455A probably damaging Het
Phactr2 A C 10: 13,122,783 (GRCm39) D446E possibly damaging Het
Pi4kb T C 3: 94,901,500 (GRCm39) L389P probably damaging Het
Pla2g4f C T 2: 120,131,476 (GRCm39) R749H probably benign Het
Plec A G 15: 76,059,974 (GRCm39) V3321A probably damaging Het
Plod2 T C 9: 92,466,580 (GRCm39) V180A probably damaging Het
Plppr5 A G 3: 117,414,618 (GRCm39) I80V probably damaging Het
Potefam3d T G 8: 69,975,316 (GRCm39) D50A probably benign Het
Rubcn T C 16: 32,687,293 (GRCm39) probably null Het
Sacs T C 14: 61,446,255 (GRCm39) V2767A probably damaging Het
Selenbp2 C G 3: 94,611,133 (GRCm39) Y414* probably null Het
Slc45a4 A T 15: 73,458,259 (GRCm39) M430K probably benign Het
Smg1 A G 7: 117,782,020 (GRCm39) L1145P possibly damaging Het
Spns2 A G 11: 72,347,742 (GRCm39) V316A probably benign Het
Srl T A 16: 4,300,811 (GRCm39) E753D probably damaging Het
Thada T C 17: 84,771,794 (GRCm39) T23A possibly damaging Het
Tmem231 T C 8: 112,660,308 (GRCm39) T31A probably benign Het
Tpr C T 1: 150,321,929 (GRCm39) T2321M possibly damaging Het
Ttn T A 2: 76,772,195 (GRCm39) N2615I unknown Het
Vmn1r41 A G 6: 89,724,034 (GRCm39) I192V probably benign Het
Vmn2r83 A T 10: 79,316,001 (GRCm39) T466S probably benign Het
Vnn1 A G 10: 23,770,952 (GRCm39) D60G probably benign Het
Wiz G A 17: 32,578,139 (GRCm39) P449S probably benign Het
Zic1 A G 9: 91,246,785 (GRCm39) S96P probably damaging Het
Zw10 T A 9: 48,981,012 (GRCm39) S471T probably benign Het
Other mutations in Cnbd2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01146:Cnbd2 APN 2 156,154,534 (GRCm39) unclassified probably benign
IGL01472:Cnbd2 APN 2 156,217,268 (GRCm39) missense probably damaging 1.00
IGL01738:Cnbd2 APN 2 156,217,537 (GRCm39) utr 3 prime probably benign
IGL01825:Cnbd2 APN 2 156,180,629 (GRCm39) missense probably damaging 1.00
IGL03001:Cnbd2 APN 2 156,175,554 (GRCm39) critical splice donor site probably null
IGL03057:Cnbd2 APN 2 156,209,592 (GRCm39) missense possibly damaging 0.80
R1006:Cnbd2 UTSW 2 156,170,328 (GRCm39) missense possibly damaging 0.86
R1080:Cnbd2 UTSW 2 156,181,193 (GRCm39) missense probably benign 0.28
R1428:Cnbd2 UTSW 2 156,181,204 (GRCm39) critical splice donor site probably null
R1592:Cnbd2 UTSW 2 156,177,322 (GRCm39) missense probably benign 0.30
R1601:Cnbd2 UTSW 2 156,175,551 (GRCm39) missense probably damaging 0.98
R1637:Cnbd2 UTSW 2 156,215,644 (GRCm39) missense probably damaging 1.00
R2259:Cnbd2 UTSW 2 156,177,192 (GRCm39) missense probably damaging 1.00
R2352:Cnbd2 UTSW 2 156,177,275 (GRCm39) missense probably damaging 1.00
R4106:Cnbd2 UTSW 2 156,177,318 (GRCm39) missense probably damaging 1.00
R4109:Cnbd2 UTSW 2 156,177,318 (GRCm39) missense probably damaging 1.00
R4479:Cnbd2 UTSW 2 156,175,573 (GRCm39) intron probably benign
R4857:Cnbd2 UTSW 2 156,209,485 (GRCm39) missense probably benign 0.01
R4893:Cnbd2 UTSW 2 156,207,104 (GRCm39) missense probably damaging 0.97
R4899:Cnbd2 UTSW 2 156,181,141 (GRCm39) missense probably benign 0.00
R5070:Cnbd2 UTSW 2 156,177,318 (GRCm39) missense probably damaging 1.00
R5446:Cnbd2 UTSW 2 156,209,581 (GRCm39) missense possibly damaging 0.95
R5784:Cnbd2 UTSW 2 156,180,577 (GRCm39) missense probably damaging 1.00
R6197:Cnbd2 UTSW 2 156,217,494 (GRCm39) missense possibly damaging 0.86
R7009:Cnbd2 UTSW 2 156,161,954 (GRCm39) missense probably benign 0.00
R7577:Cnbd2 UTSW 2 156,170,296 (GRCm39) missense possibly damaging 0.93
R7699:Cnbd2 UTSW 2 156,217,326 (GRCm39) missense probably benign 0.00
R8146:Cnbd2 UTSW 2 156,170,281 (GRCm39) missense probably damaging 1.00
R8893:Cnbd2 UTSW 2 156,154,460 (GRCm39) missense unknown
R9135:Cnbd2 UTSW 2 156,217,488 (GRCm39) missense probably damaging 0.97
R9715:Cnbd2 UTSW 2 156,183,547 (GRCm39) missense probably benign 0.13
R9734:Cnbd2 UTSW 2 156,180,540 (GRCm39) missense possibly damaging 0.91
X0002:Cnbd2 UTSW 2 156,180,617 (GRCm39) missense probably benign 0.22
Predicted Primers PCR Primer
(F):5'- AGATACCAATGTGAGCGGCTC -3'
(R):5'- GTACGTTCTCAGCACTGACC -3'

Sequencing Primer
(F):5'- TGGGCTGTACAGGGCTCTAC -3'
(R):5'- TTCTCAGCACTGACCTGGGATAG -3'
Posted On 2019-06-26