Mutagenetix > Incidental Mutation

Incidental Mutation 'R7223:Map6'

561939

Institutional Source

Beutler Lab

Gene Symbol

Map6

Ensembl Gene

ENSMUSG00000055407

Gene Name

microtubule-associated protein 6

Synonyms

F-STOP, Mtap6, 2810411E12Rik, STOP

MMRRC Submission

045295-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.150) question?

Stock #

R7223 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

99267447-99337137 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 99268025 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Serine at position 2 (A2S)

Ref Sequence

ENSEMBL: ENSMUSP00000064787 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068973] [ENSMUST00000107100] [ENSMUST00000122101] [ENSMUST00000127492] [ENSMUST00000207883] [ENSMUST00000208605] [ENSMUST00000208924]

AlphaFold

Q7TSJ2

Predicted Effect

probably damaging
Transcript: ENSMUST00000068973
AA Change: A2S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000064787
Gene: ENSMUSG00000055407
AA Change: A2S

Domain	Start	End	E-Value	Type
low complexity region	42	57	N/A	INTRINSIC
low complexity region	93	117	N/A	INTRINSIC
internal_repeat_1	191	306	6.21e-27	PROSPERO
internal_repeat_1	302	398	6.21e-27	PROSPERO
low complexity region	501	525	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107100

SMART Domains

Protein: ENSMUSP00000102717
Gene: ENSMUSG00000055407

Domain	Start	End	E-Value	Type
low complexity region	12	26	N/A	INTRINSIC
internal_repeat_1	28	103	5.9e-29	PROSPERO
internal_repeat_1	120	195	5.9e-29	PROSPERO

Predicted Effect

probably damaging
Transcript: ENSMUST00000122101
AA Change: A2S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000113183
Gene: ENSMUSG00000055407
AA Change: A2S

Domain	Start	End	E-Value	Type
Pfam:STOP	1	184	1.2e-18	PFAM
internal_repeat_1	191	306	1.99e-35	PROSPERO
internal_repeat_1	302	398	1.99e-35	PROSPERO

Predicted Effect

probably damaging
Transcript: ENSMUST00000127492
AA Change: A2S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000207883
AA Change: A2S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably benign
Transcript: ENSMUST00000208605

Predicted Effect

probably benign
Transcript: ENSMUST00000208924

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a microtubule-associated protein. The encoded protein is a calmodulin-binding and calmodulin-regulated protein that is involved in microtubule stabilization. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a targeted null mutation are devoid of cold-stable microtubules, and exhibit impaired synaptic plasticity, associated with severe behavioral abnormalities that are specifically ameliorated by long-term administration of neuroleptics. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	T	2: 69,274,143 (GRCm38)	V733E	probably benign	Het
Adam34	A	T	8: 43,652,004 (GRCm38)	N201K	probably benign	Het
Aldh3b2	A	C	19: 3,979,592 (GRCm38)	S322R	probably damaging	Het
Anpep	A	T	7: 79,825,310 (GRCm38)	L914Q	probably damaging	Het
Arhgap30	T	C	1: 171,407,571 (GRCm38)	F535S	probably damaging	Het
Baiap3	G	A	17: 25,243,840 (GRCm38)	R1075C	probably benign	Het
Baz2a	G	T	10: 128,112,606 (GRCm38)	G252V	probably damaging	Het
Brinp3	T	A	1: 146,901,074 (GRCm38)	S420T	possibly damaging	Het
Carmil3	T	C	14: 55,496,238 (GRCm38)	F359S	possibly damaging	Het
Ccdc124	A	T	8: 70,868,526 (GRCm38)	L190Q	probably damaging	Het
Ccr6	T	C	17: 8,256,140 (GRCm38)	V59A	probably damaging	Het
Ccr8	T	A	9: 120,094,617 (GRCm38)	I266N	probably damaging	Het
Cdh23	T	A	10: 60,331,817 (GRCm38)	E1798V	probably damaging	Het
Cdk5rap2	T	C	4: 70,235,447 (GRCm38)	N1713S	probably benign	Het
Cep19	T	A	16: 32,104,015 (GRCm38)	I33N	probably damaging	Het
Cers3	A	T	7: 66,783,415 (GRCm38)	Y196F	probably damaging	Het
Cidea	T	C	18: 67,366,421 (GRCm38)	I126T	probably damaging	Het
Copg2	A	T	6: 30,812,754 (GRCm38)	Y546*	probably null	Het
Cul3	A	T	1: 80,287,000 (GRCm38)	V261E	probably benign	Het
Cyp2g1	A	T	7: 26,814,632 (GRCm38)	D221V	probably damaging	Het
Cyp8b1	G	A	9: 121,915,097 (GRCm38)	H390Y	probably damaging	Het
Daam1	T	C	12: 71,988,943 (GRCm38)	F971L	probably damaging	Het
Dnajc24	G	A	2: 106,001,966 (GRCm38)	S24L	possibly damaging	Het
Dpysl3	T	C	18: 43,438,042 (GRCm38)	S56G	probably benign	Het
Esp1	A	G	17: 40,731,081 (GRCm38)	D88G	probably benign	Het
Fam171b	A	G	2: 83,878,230 (GRCm38)	T359A	probably damaging	Het
Fam186b	T	C	15: 99,279,837 (GRCm38)	E536G	possibly damaging	Het
Fbxo3	T	C	2: 104,043,012 (GRCm38)	V156A	possibly damaging	Het
Gls2	C	A	10: 128,199,194 (GRCm38)	H65Q	probably benign	Het
Gp2	A	G	7: 119,451,498 (GRCm38)		probably null	Het
Gpcpd1	T	A	2: 132,534,056 (GRCm38)	K435I	probably benign	Het
Gpx6	T	A	13: 21,317,670 (GRCm38)		probably null	Het
Hps3	A	T	3: 20,030,419 (GRCm38)	S202T	probably benign	Het
Htr1d	T	A	4: 136,443,501 (GRCm38)	L347H	probably damaging	Het
Igfals	T	C	17: 24,881,234 (GRCm38)	L433P	probably damaging	Het
Ilvbl	C	T	10: 78,583,696 (GRCm38)	H537Y	probably benign	Het
Iqgap2	A	T	13: 95,628,972 (GRCm38)	M1530K	probably damaging	Het
Jarid2	A	G	13: 44,896,322 (GRCm38)	T247A	possibly damaging	Het
L3hypdh	C	T	12: 72,074,009 (GRCm38)	V323I	possibly damaging	Het
Lama3	C	T	18: 12,582,608 (GRCm38)	T1707I	possibly damaging	Het
Mfap3	T	A	11: 57,530,240 (GRCm38)	I349K	probably benign	Het
Mybl2	A	G	2: 163,072,705 (GRCm38)	T248A	probably benign	Het
N6amt1	A	G	16: 87,362,660 (GRCm38)	*151W	probably null	Het
Nhlrc1	A	G	13: 47,014,208 (GRCm38)	V191A	probably benign	Het
Nkx2-5	T	C	17: 26,839,620 (GRCm38)	E120G	possibly damaging	Het
Olfr1066	T	A	2: 86,455,867 (GRCm38)	I135F	possibly damaging	Het
Olfr1380	T	A	11: 49,564,098 (GRCm38)	M59K	probably damaging	Het
Olfr582	C	A	7: 103,041,632 (GRCm38)	T46N	possibly damaging	Het
Olfr890	T	C	9: 38,143,753 (GRCm38)	V201A	probably benign	Het
Pcdha8	T	G	18: 36,993,148 (GRCm38)	L228V	probably benign	Het
Pcsk2	A	G	2: 143,690,333 (GRCm38)	T134A	possibly damaging	Het
Phldb3	G	A	7: 24,624,653 (GRCm38)	R484Q	probably benign	Het
Pipox	A	G	11: 77,881,186 (GRCm38)	S371P	probably damaging	Het
Plekhg1	T	C	10: 3,873,343 (GRCm38)	S159P		Het
Psme4	C	T	11: 30,874,226 (GRCm38)	P1737S	probably benign	Het
Pygm	G	A	19: 6,388,863 (GRCm38)	D328N	probably benign	Het
Rabgef1	A	T	5: 130,190,960 (GRCm38)	E88V	probably benign	Het
Rims2	G	T	15: 39,437,032 (GRCm38)	R245L	probably benign	Het
Slc38a4	T	C	15: 97,010,345 (GRCm38)	I172V	probably damaging	Het
Slc4a10	T	A	2: 62,268,665 (GRCm38)	Y586N	probably damaging	Het
Snap91	C	T	9: 86,879,557 (GRCm38)		probably benign	Het
Sorcs1	C	T	19: 50,190,042 (GRCm38)	V881I	probably benign	Het
Spef2	A	T	15: 9,601,640 (GRCm38)	V1512E	unknown	Het
Sufu	T	C	19: 46,453,277 (GRCm38)	I292T	possibly damaging	Het
Tet1	T	C	10: 62,813,671 (GRCm38)	N87D	possibly damaging	Het
Tmem108	T	C	9: 103,499,534 (GRCm38)	T239A	not run	Het
Tmem121	A	T	12: 113,188,494 (GRCm38)	K111*	probably null	Het
Tpp2	T	A	1: 43,968,888 (GRCm38)	D417E	probably damaging	Het
Tpr	G	A	1: 150,439,256 (GRCm38)	E2025K	possibly damaging	Het
Trappc3	C	T	4: 126,275,152 (GRCm38)	A145V	possibly damaging	Het
Ttn	T	C	2: 76,890,981 (GRCm38)	D6754G	probably null	Het
Unc13c	T	A	9: 73,629,191 (GRCm38)	M1627L	probably benign	Het
Ush2a	A	G	1: 188,810,217 (GRCm38)	I3327V	probably benign	Het
Vmn1r74	C	T	7: 11,846,967 (GRCm38)	Q65*	probably null	Het
Wdr18	G	A	10: 79,960,368 (GRCm38)	R69H	probably damaging	Het
Zbed5	G	T	5: 129,900,438 (GRCm38)	D132Y	probably damaging	Het
Zfp644	A	T	5: 106,637,582 (GRCm38)	Y366*	probably null	Het
Zfyve26	T	C	12: 79,246,171 (GRCm38)	N2068S	probably damaging	Het
Zic2	T	C	14: 122,476,091 (GRCm38)	F139S	probably damaging	Het
Zmynd11	T	C	13: 9,710,162 (GRCm38)	Q141R	probably benign	Het
Zrsr1	A	G	11: 22,973,388 (GRCm38)	E54G	probably benign	Het
Zscan10	G	A	17: 23,609,482 (GRCm38)	D333N	probably benign	Het

Other mutations in Map6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0035:Map6	UTSW	7	99,317,608 (GRCm38)	missense	probably damaging	1.00
R0035:Map6	UTSW	7	99,317,608 (GRCm38)	missense	probably damaging	1.00
R0118:Map6	UTSW	7	99,317,617 (GRCm38)	missense	possibly damaging	0.53
R0125:Map6	UTSW	7	99,335,980 (GRCm38)	splice site	probably null
R0244:Map6	UTSW	7	99,336,836 (GRCm38)	missense	probably benign	0.00
R0973:Map6	UTSW	7	99,336,743 (GRCm38)	missense	possibly damaging	0.78
R0973:Map6	UTSW	7	99,336,743 (GRCm38)	missense	possibly damaging	0.78
R0974:Map6	UTSW	7	99,336,743 (GRCm38)	missense	possibly damaging	0.78
R1455:Map6	UTSW	7	99,268,214 (GRCm38)	missense	probably damaging	1.00
R1678:Map6	UTSW	7	99,268,098 (GRCm38)	missense	probably damaging	1.00
R1696:Map6	UTSW	7	99,317,457 (GRCm38)	splice site	probably null
R1866:Map6	UTSW	7	99,315,876 (GRCm38)	missense	probably damaging	1.00
R2061:Map6	UTSW	7	99,317,472 (GRCm38)	missense	probably damaging	1.00
R3236:Map6	UTSW	7	99,336,824 (GRCm38)	missense	probably damaging	1.00
R3625:Map6	UTSW	7	99,269,195 (GRCm38)	missense	possibly damaging	0.60
R4044:Map6	UTSW	7	99,268,049 (GRCm38)	missense	probably damaging	1.00
R4570:Map6	UTSW	7	99,336,556 (GRCm38)	missense	possibly damaging	0.49
R5056:Map6	UTSW	7	99,336,652 (GRCm38)	missense	probably benign	0.05
R5065:Map6	UTSW	7	99,336,710 (GRCm38)	missense	probably benign	0.02
R5656:Map6	UTSW	7	99,336,298 (GRCm38)	missense	probably damaging	1.00
R6101:Map6	UTSW	7	99,268,107 (GRCm38)	missense	probably damaging	1.00
R6105:Map6	UTSW	7	99,268,107 (GRCm38)	missense	probably damaging	1.00
R6302:Map6	UTSW	7	99,336,107 (GRCm38)	missense	probably damaging	0.99
R6450:Map6	UTSW	7	99,268,038 (GRCm38)	missense	probably damaging	1.00
R6915:Map6	UTSW	7	99,268,247 (GRCm38)	missense	probably damaging	1.00
R7205:Map6	UTSW	7	99,269,050 (GRCm38)	missense	probably benign	0.00
R7293:Map6	UTSW	7	99,336,533 (GRCm38)	missense	possibly damaging	0.49
R7481:Map6	UTSW	7	99,269,138 (GRCm38)	missense	possibly damaging	0.57
R7489:Map6	UTSW	7	99,268,061 (GRCm38)	missense	probably damaging	1.00
R7691:Map6	UTSW	7	99,336,292 (GRCm38)	missense	possibly damaging	0.95
R7693:Map6	UTSW	7	99,336,292 (GRCm38)	missense	possibly damaging	0.95
R7695:Map6	UTSW	7	99,336,292 (GRCm38)	missense	possibly damaging	0.95
R8341:Map6	UTSW	7	99,268,440 (GRCm38)	missense	possibly damaging	0.75
R8865:Map6	UTSW	7	99,268,985 (GRCm38)	missense	probably benign	0.37
R8953:Map6	UTSW	7	99,315,871 (GRCm38)	missense	probably damaging	1.00
R9108:Map6	UTSW	7	99,336,896 (GRCm38)	missense	probably damaging	1.00
R9173:Map6	UTSW	7	99,268,728 (GRCm38)	missense	probably damaging	1.00
R9613:Map6	UTSW	7	99,269,177 (GRCm38)	missense	possibly damaging	0.90
R9654:Map6	UTSW	7	99,336,959 (GRCm38)	missense	probably damaging	1.00
Z1176:Map6	UTSW	7	99,317,660 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GACTTTATCTCAGCGGTACCTTGTC -3'
(R):5'- AGTCCTTCTGGTACTGGGTC -3'

Sequencing Primer
(F):5'- TCCCCGGGTGCTCTTTGAG -3'
(R):5'- TAGTCCTGTCGCATCACCGAG -3'

Posted On

2019-06-26