Mutagenetix > Incidental Mutation

Incidental Mutation 'R7236:Golga5'

562840

Institutional Source

Beutler Lab

Gene Symbol

Golga5

Ensembl Gene

ENSMUSG00000021192

Gene Name

golgin A5

Synonyms

Ret-II

MMRRC Submission

045306-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7236 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

102435394-102464166 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to A at 102441034 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000021609 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021609] [ENSMUST00000179218]

AlphaFold

Q9QYE6

Predicted Effect

probably null
Transcript: ENSMUST00000021609

SMART Domains

Protein: ENSMUSP00000021609
Gene: ENSMUSG00000021192

Domain	Start	End	E-Value	Type
low complexity region	148	167	N/A	INTRINSIC
low complexity region	193	213	N/A	INTRINSIC
Pfam:Golgin_A5	233	709	1.1e-172	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000179218

SMART Domains

Protein: ENSMUSP00000137305
Gene: ENSMUSG00000021192

Domain	Start	End	E-Value	Type
low complexity region	148	167	N/A	INTRINSIC
low complexity region	193	213	N/A	INTRINSIC
Pfam:Golgin_A5	233	709	1.1e-172	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

100% (66/66)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Golgi apparatus, which participates in glycosylation and transport of proteins and lipids in the secretory pathway, consists of a series of stacked cisternae (flattened membrane sacs). Interactions between the Golgi and microtubules are thought to be important for the reorganization of the Golgi after it fragments during mitosis. This gene encodes one of the golgins, a family of proteins localized to the Golgi. This protein is a coiled-coil membrane protein that has been postulated to play a role in vesicle tethering and docking. Translocations involving this gene and the ret proto-oncogene have been found in tumor tissues; the chimeric sequences have been designated RET-II and PTC5. A pseudogene of this gene is located on the short arm of chromosome 5. [provided by RefSeq, Jul 2013]
PHENOTYPE: Homozygous knockout does not result in an obvious phenotype and does not affect Golgi apparatus morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actn3	C	T	19: 4,921,644 (GRCm39)	V179I	probably benign	Het
Adra1b	A	G	11: 43,667,151 (GRCm39)	I362T	possibly damaging	Het
B3galnt1	T	C	3: 69,482,950 (GRCm39)	K104E	probably benign	Het
Bnc2	T	C	4: 84,474,101 (GRCm39)	Y15C	probably benign	Het
C2cd2l	C	A	9: 44,228,960 (GRCm39)	A124S	possibly damaging	Het
Camsap3	T	A	8: 3,654,116 (GRCm39)	F595L	probably damaging	Het
Cct2	A	T	10: 116,897,464 (GRCm39)	D93E	probably benign	Het
Cd200l2	A	T	16: 45,348,030 (GRCm39)	I169N	possibly damaging	Het
Cemip	A	T	7: 83,598,012 (GRCm39)		probably null	Het
Ciapin1	T	C	8: 95,550,338 (GRCm39)	T34A		Het
Dop1a	G	A	9: 86,397,431 (GRCm39)	V912I	probably damaging	Het
Efcab3	A	T	11: 104,790,093 (GRCm39)	Q2832L	probably benign	Het
Eif3c	T	C	7: 126,151,495 (GRCm39)	T610A	possibly damaging	Het
Ephb3	A	G	16: 21,033,231 (GRCm39)	R106G	probably damaging	Het
Ephx3	T	A	17: 32,404,328 (GRCm39)		probably null	Het
Etv2	A	T	7: 30,334,455 (GRCm39)	S93T	probably benign	Het
Fbxo34	T	A	14: 47,767,841 (GRCm39)	D451E	probably benign	Het
Fmo9	A	G	1: 166,504,140 (GRCm39)	F141L	probably damaging	Het
Fryl	T	C	5: 73,265,821 (GRCm39)	K500R	possibly damaging	Het
Gfra3	T	C	18: 34,828,884 (GRCm39)	D170G	probably damaging	Het
Gnptg	T	C	17: 25,458,897 (GRCm39)	N34S	possibly damaging	Het
Herc2	G	T	7: 55,734,828 (GRCm39)	L139F	probably benign	Het
Ikzf2	T	A	1: 69,578,240 (GRCm39)	N423I	probably benign	Het
Il31ra	A	T	13: 112,660,439 (GRCm39)	*717R	probably null	Het
Itga2	G	T	13: 115,014,227 (GRCm39)	Q234K	probably benign	Het
Kcnt1	A	T	2: 25,799,951 (GRCm39)		probably null	Het
Kif19b	G	T	5: 140,457,400 (GRCm39)	A390S	probably benign	Het
Man2a2	T	C	7: 80,018,653 (GRCm39)	S69G	probably damaging	Het
Mccc1	A	G	3: 36,037,944 (GRCm39)	V294A	probably benign	Het
Mphosph8	T	A	14: 56,911,754 (GRCm39)	I259K	possibly damaging	Het
Mrpl15	A	T	1: 4,846,711 (GRCm39)	N288K	probably benign	Het
Msantd2	T	C	9: 37,400,965 (GRCm39)	W116R	probably damaging	Het
Msantd5f9	G	T	4: 73,835,808 (GRCm39)	L219M	probably benign	Het
Mtmr10	T	C	7: 63,963,932 (GRCm39)		probably benign	Het
Mylk	A	T	16: 34,742,899 (GRCm39)	D1137V	probably damaging	Het
Nhsl1	A	G	10: 18,401,512 (GRCm39)	K879E	probably damaging	Het
Or8j3c	A	T	2: 86,253,533 (GRCm39)	C162*	probably null	Het
Pak6	A	G	2: 118,523,909 (GRCm39)	T355A	probably benign	Het
Patj	C	T	4: 98,299,294 (GRCm39)	R139C	probably damaging	Het
Pcdhb3	C	T	18: 37,434,505 (GRCm39)	A157V	probably damaging	Het
Phkg1	C	A	5: 129,895,802 (GRCm39)	D150Y	probably damaging	Het
Ppp2r5c	C	T	12: 110,432,323 (GRCm39)	S45L	probably benign	Het
Prl4a1	A	C	13: 28,202,556 (GRCm39)	T44P	probably benign	Het
Ptpro	G	A	6: 137,345,335 (GRCm39)	V114M	probably damaging	Het
Pwp1	A	G	10: 85,715,147 (GRCm39)	N211S	probably benign	Het
Ralgapb	A	G	2: 158,282,747 (GRCm39)	D504G	probably benign	Het
Rock2	A	T	12: 16,979,003 (GRCm39)	I98F	probably damaging	Het
Senp6	G	T	9: 80,040,247 (GRCm39)	V785L	probably damaging	Het
Simc1	A	G	13: 54,672,609 (GRCm39)	D319G	probably benign	Het
Tas2r105	A	T	6: 131,663,723 (GRCm39)	I235N	probably damaging	Het
Tas2r110	A	T	6: 132,845,667 (GRCm39)	M233L	possibly damaging	Het
Tmem260	C	T	14: 48,746,647 (GRCm39)		probably null	Het
Trank1	G	T	9: 111,202,142 (GRCm39)	V1590L	possibly damaging	Het
Tsc2	A	T	17: 24,842,568 (GRCm39)	M286K	possibly damaging	Het
Ttn	T	C	2: 76,697,796 (GRCm39)	T202A		Het
Ttyh1	A	G	7: 4,136,663 (GRCm39)	N424D	probably benign	Het
Usp24	T	A	4: 106,263,502 (GRCm39)		probably null	Het
Utp20	G	T	10: 88,585,204 (GRCm39)	P2620Q	probably benign	Het
Vmn1r45	A	G	6: 89,910,133 (GRCm39)	M279T	probably benign	Het
Vmn2r115	T	A	17: 23,578,576 (GRCm39)	I683K	probably benign	Het
Vmn2r34	T	C	7: 7,684,750 (GRCm39)	K481E	probably damaging	Het
Vmn2r54	T	A	7: 12,365,917 (GRCm39)	H339L	possibly damaging	Het
Vmn2r94	T	A	17: 18,477,811 (GRCm39)	N200I	possibly damaging	Het
Wdfy3	A	G	5: 101,984,074 (GRCm39)	Y3493H	probably damaging	Het
Wdr5b	A	G	16: 35,862,208 (GRCm39)	D109G	possibly damaging	Het
Zfp286	A	T	11: 62,674,496 (GRCm39)		probably null	Het

Other mutations in Golga5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01104:Golga5	APN	12	102,460,073 (GRCm39)	missense	probably damaging	0.99
IGL01487:Golga5	APN	12	102,461,955 (GRCm39)	intron	probably benign
IGL01585:Golga5	APN	12	102,445,954 (GRCm39)	missense	probably benign
IGL01901:Golga5	APN	12	102,446,061 (GRCm39)	critical splice donor site	probably null
IGL02063:Golga5	APN	12	102,438,418 (GRCm39)	missense	probably benign	0.00
IGL02118:Golga5	APN	12	102,462,011 (GRCm39)	missense	possibly damaging	0.67
IGL02568:Golga5	APN	12	102,438,338 (GRCm39)	missense	probably benign	0.33
golgotha	UTSW	12	102,450,835 (GRCm39)	critical splice donor site	probably null
BB007:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
BB017:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
FR4976:Golga5	UTSW	12	102,441,919 (GRCm39)	splice site	probably null
R0244:Golga5	UTSW	12	102,442,447 (GRCm39)	missense	probably benign
R0432:Golga5	UTSW	12	102,442,467 (GRCm39)	missense	possibly damaging	0.50
R0552:Golga5	UTSW	12	102,450,752 (GRCm39)	missense	possibly damaging	0.75
R0659:Golga5	UTSW	12	102,442,467 (GRCm39)	missense	possibly damaging	0.50
R1244:Golga5	UTSW	12	102,438,554 (GRCm39)	missense	probably benign	0.01
R1542:Golga5	UTSW	12	102,440,979 (GRCm39)	missense	probably damaging	1.00
R1791:Golga5	UTSW	12	102,458,390 (GRCm39)	missense	possibly damaging	0.48
R2310:Golga5	UTSW	12	102,458,420 (GRCm39)	missense	probably damaging	0.99
R5110:Golga5	UTSW	12	102,438,336 (GRCm39)	missense	probably benign	0.02
R5704:Golga5	UTSW	12	102,455,707 (GRCm39)	missense	probably benign	0.00
R6228:Golga5	UTSW	12	102,450,740 (GRCm39)	missense	probably benign	0.00
R6229:Golga5	UTSW	12	102,450,740 (GRCm39)	missense	probably benign	0.00
R6241:Golga5	UTSW	12	102,438,732 (GRCm39)	missense	probably damaging	0.96
R7355:Golga5	UTSW	12	102,438,494 (GRCm39)	missense	possibly damaging	0.83
R7404:Golga5	UTSW	12	102,450,778 (GRCm39)	missense	probably damaging	0.97
R7493:Golga5	UTSW	12	102,450,835 (GRCm39)	critical splice donor site	probably null
R7930:Golga5	UTSW	12	102,450,681 (GRCm39)	missense	probably benign	0.31
R8062:Golga5	UTSW	12	102,450,739 (GRCm39)	missense	probably benign
R8231:Golga5	UTSW	12	102,438,558 (GRCm39)	missense	probably benign
R8765:Golga5	UTSW	12	102,445,963 (GRCm39)	missense	probably benign	0.01
R9083:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9085:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9086:Golga5	UTSW	12	102,458,476 (GRCm39)	missense	probably benign	0.01
R9301:Golga5	UTSW	12	102,443,057 (GRCm39)	missense	probably benign	0.00
R9655:Golga5	UTSW	12	102,446,008 (GRCm39)	missense	possibly damaging	0.55
Z1177:Golga5	UTSW	12	102,438,264 (GRCm39)	start gained	probably benign
Z1187:Golga5	UTSW	12	102,440,853 (GRCm39)	missense	probably benign	0.13

Predicted Primers

PCR Primer
(F):5'- TCATAAGGAACCCTCAGAGGAG -3'
(R):5'- CTGAGTCTCAGGTTAGGCTGAG -3'

Sequencing Primer
(F):5'- ACCCTCAGAGGAGAGCACG -3'
(R):5'- CTCAGGTTAGGCTGAGGTACG -3'

Posted On

2019-06-26