Mutagenetix > Incidental Mutation

Incidental Mutation 'R7237:Trim34b'

562897

Institutional Source

Beutler Lab

Gene Symbol

Trim34b

Ensembl Gene

ENSMUSG00000090215

Gene Name

tripartite motif-containing 34B

Synonyms

Trim34-2, Gm15134

MMRRC Submission

045344-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.180) question?

Stock #

R7237 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

103978678-103986116 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 103978794 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 14 (T14A)

Ref Sequence

ENSEMBL: ENSMUSP00000102460 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000106847] [ENSMUST00000180136]

AlphaFold

J3QNR8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106847
AA Change: T14A

PolyPhen 2 Score 0.801 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000102460
Gene: ENSMUSG00000090215
AA Change: T14A

Domain	Start	End	E-Value	Type
RING	15	58	7.8e-7	SMART
ZnF_RBZ	31	61	5.96e-1	SMART
BBOX	91	132	2.15e-9	SMART
low complexity region	195	209	N/A	INTRINSIC
Blast:PRY	299	343	3e-21	BLAST
Pfam:SPRY	347	474	7.8e-12	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000180136
AA Change: T14A

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000136926
Gene: ENSMUSG00000090215
AA Change: T14A

Domain	Start	End	E-Value	Type
RING	15	58	7.8e-7	SMART
ZnF_RBZ	31	61	5.96e-1	SMART
BBOX	91	132	2.15e-9	SMART
low complexity region	195	209	N/A	INTRINSIC
Blast:PRY	299	343	2e-21	BLAST
Pfam:SPRY	345	484	3e-20	PFAM

Meta Mutation Damage Score

0.3448

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

98% (83/85)

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arhgap21	A	T	2: 20,854,783 (GRCm39)	C1536*	probably null	Het
Armc9	C	A	1: 86,092,571 (GRCm39)	Q169K	possibly damaging	Het
Aspm	T	A	1: 139,405,667 (GRCm39)	M1518K	possibly damaging	Het
AU018091	A	G	7: 3,209,006 (GRCm39)	I360T	probably benign	Het
BB014433	C	A	8: 15,091,765 (GRCm39)	V363L	probably benign	Het
Bcam	T	C	7: 19,503,232 (GRCm39)		probably null	Het
Cacna1g	T	C	11: 94,328,705 (GRCm39)	S1071G	probably benign	Het
Card9	A	T	2: 26,246,787 (GRCm39)	S354T	probably benign	Het
Ccdc87	A	G	19: 4,889,790 (GRCm39)	N94S	probably benign	Het
Cdc27	A	G	11: 104,408,245 (GRCm39)	V555A	probably benign	Het
Coro1a	T	A	7: 126,299,478 (GRCm39)	D411V	probably benign	Het
Cybrd1	GGTCCTGCAC	G	2: 70,948,553 (GRCm39)		probably benign	Het
Cyth1	A	T	11: 118,076,321 (GRCm39)	I95N	probably damaging	Het
Dnah7b	A	T	1: 46,179,126 (GRCm39)	E933V	probably damaging	Het
Dync2h1	A	T	9: 6,993,966 (GRCm39)	I3968N	probably benign	Het
Fam184a	T	C	10: 53,510,489 (GRCm39)		probably benign	Het
Fat3	G	A	9: 16,288,510 (GRCm39)	L338F	probably damaging	Het
Fcgr3	A	G	1: 170,886,870 (GRCm39)	L18P	probably damaging	Het
Gbp5	T	C	3: 142,213,461 (GRCm39)	V459A	probably benign	Het
Gja4	A	T	4: 127,205,956 (GRCm39)	M269K	probably benign	Het
Gm4787	A	G	12: 81,424,442 (GRCm39)	V572A	probably damaging	Het
Grin2d	G	T	7: 45,515,600 (GRCm39)	S131*	probably null	Het
Gys1	A	G	7: 45,104,586 (GRCm39)	D671G	probably benign	Het
Haspin	T	C	11: 73,027,712 (GRCm39)	N459S	probably benign	Het
Hdac10	G	T	15: 89,009,580 (GRCm39)	Q451K	probably benign	Het
Hdac9	T	C	12: 34,424,139 (GRCm39)		probably null	Het
Hmcn1	A	G	1: 150,598,394 (GRCm39)	V1636A	probably damaging	Het
Hpca	A	G	4: 129,012,407 (GRCm39)	L43P	probably damaging	Het
Hycc2	G	A	1: 58,569,107 (GRCm39)	Q491*	probably null	Het
Insm1	C	A	2: 146,064,448 (GRCm39)	A88E	possibly damaging	Het
Itga9	A	G	9: 118,465,670 (GRCm39)	K175E	probably benign	Het
Kif13a	A	G	13: 46,962,632 (GRCm39)		probably null	Het
Kif20b	T	A	19: 34,928,005 (GRCm39)	L1089H	probably damaging	Het
Lamp5	A	T	2: 135,901,755 (GRCm39)	H152L	probably benign	Het
Lrp4	T	C	2: 91,303,528 (GRCm39)	F76L	probably benign	Het
Magi3	T	C	3: 103,935,227 (GRCm39)	D902G	probably damaging	Het
Map10	C	T	8: 126,397,963 (GRCm39)	P452L	probably benign	Het
Mapk6	A	G	9: 75,304,895 (GRCm39)	L174P	probably damaging	Het
Meak7	C	T	8: 120,489,054 (GRCm39)	G410S	probably damaging	Het
Ndufa4	C	T	6: 11,906,018 (GRCm39)		probably null	Het
Nedd4	A	T	9: 72,632,346 (GRCm39)	E393D	probably benign	Het
Nlrp4b	G	A	7: 10,449,143 (GRCm39)	V449I	probably benign	Het
Nufip2	T	A	11: 77,583,596 (GRCm39)	N503K	probably benign	Het
Or10ac1	T	C	6: 42,515,581 (GRCm39)	D125G	probably damaging	Het
Or6y1	C	T	1: 174,276,905 (GRCm39)	R239C	probably benign	Het
P4ha1	A	G	10: 59,184,065 (GRCm39)	T176A	probably benign	Het
Palm3	A	G	8: 84,756,117 (GRCm39)	K543R	probably benign	Het
Parvg	G	A	15: 84,225,557 (GRCm39)	A302T	probably benign	Het
Pcdh15	A	G	10: 74,420,023 (GRCm39)	D1227G	possibly damaging	Het
Pdzd8	C	T	19: 59,333,571 (GRCm39)	G150D	probably damaging	Het
Pitpnm2	A	G	5: 124,263,360 (GRCm39)		probably null	Het
Pld5	T	C	1: 176,102,301 (GRCm39)	Q47R	possibly damaging	Het
Ppp2r5d	T	C	17: 46,997,206 (GRCm39)	S329G	possibly damaging	Het
Prss56	T	C	1: 87,112,637 (GRCm39)	V144A	probably damaging	Het
Psg28	A	T	7: 18,161,769 (GRCm39)	Y245N	possibly damaging	Het
Ptpn3	C	T	4: 57,239,625 (GRCm39)	V302I	probably damaging	Het
Ptprn2	A	G	12: 117,125,347 (GRCm39)	H627R	probably benign	Het
Rasgrp2	A	T	19: 6,454,838 (GRCm39)	H226L	possibly damaging	Het
Rbm20	C	T	19: 53,839,930 (GRCm39)	T973M	probably benign	Het
Rigi	T	A	4: 40,205,938 (GRCm39)	I885F	probably benign	Het
Riok2	T	A	17: 17,598,045 (GRCm39)	L44Q	probably damaging	Het
Rusc1	G	T	3: 88,998,805 (GRCm39)	Q326K	possibly damaging	Het
Rxylt1	A	T	10: 121,917,523 (GRCm39)	L330*	probably null	Het
Sart3	A	T	5: 113,892,307 (GRCm39)	H397Q	possibly damaging	Het
Sec31b	T	A	19: 44,506,147 (GRCm39)	T920S	probably damaging	Het
Serpinb13	A	G	1: 106,926,679 (GRCm39)	E225G	probably damaging	Het
Slc25a47	T	C	12: 108,821,386 (GRCm39)	L165P	probably damaging	Het
Slc2a10	G	A	2: 165,357,197 (GRCm39)	V286I	probably benign	Het
Slc39a13	G	T	2: 90,895,979 (GRCm39)	T174N	probably benign	Het
Slc7a13	T	A	4: 19,839,364 (GRCm39)	N322K	probably benign	Het
Stk38	T	C	17: 29,193,620 (GRCm39)	T326A	possibly damaging	Het
Sult1a1	T	C	7: 126,272,622 (GRCm39)	M244V	probably benign	Het
Tas2r144	C	T	6: 42,192,800 (GRCm39)	T180I	probably damaging	Het
Tbc1d12	T	A	19: 38,887,346 (GRCm39)	M366K	probably benign	Het
Terb1	T	C	8: 105,221,959 (GRCm39)	I147V	possibly damaging	Het
Tnik	T	C	3: 28,692,568 (GRCm39)	Y820H	probably damaging	Het
Tnxb	C	A	17: 34,901,170 (GRCm39)	L995I	possibly damaging	Het
Urb1	T	C	16: 90,588,054 (GRCm39)	E418G	probably damaging	Het
Vmn1r12	T	A	6: 57,136,550 (GRCm39)	C216S	possibly damaging	Het
Vmn2r90	T	A	17: 17,924,249 (GRCm39)	V16E	possibly damaging	Het
Vps11	A	T	9: 44,265,803 (GRCm39)	V492D	probably damaging	Het
Wdr62	A	C	7: 29,969,869 (GRCm39)		probably null	Het
Zc3h14	T	A	12: 98,746,408 (GRCm39)	M539K	probably benign	Het
Zfp871	A	T	17: 32,994,289 (GRCm39)	H295Q	probably damaging	Het

Other mutations in Trim34b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00975:Trim34b	APN	7	103,978,859 (GRCm39)	nonsense	probably null
IGL01103:Trim34b	APN	7	103,979,106 (GRCm39)	missense	probably damaging	1.00
IGL02252:Trim34b	APN	7	103,979,139 (GRCm39)	missense	probably damaging	0.98
IGL03241:Trim34b	APN	7	103,983,820 (GRCm39)	intron	probably benign
R0032:Trim34b	UTSW	7	103,985,784 (GRCm39)	missense	possibly damaging	0.61
R0381:Trim34b	UTSW	7	103,979,062 (GRCm39)	missense	probably damaging	1.00
R2403:Trim34b	UTSW	7	103,978,876 (GRCm39)	missense	probably benign
R2520:Trim34b	UTSW	7	103,980,446 (GRCm39)	missense	probably damaging	1.00
R2857:Trim34b	UTSW	7	103,985,439 (GRCm39)	missense	probably benign	0.00
R2859:Trim34b	UTSW	7	103,985,439 (GRCm39)	missense	probably benign	0.00
R3077:Trim34b	UTSW	7	103,980,508 (GRCm39)	missense	possibly damaging	0.89
R4094:Trim34b	UTSW	7	103,983,795 (GRCm39)	missense	probably benign
R4449:Trim34b	UTSW	7	103,984,935 (GRCm39)	missense	probably benign	0.00
R5183:Trim34b	UTSW	7	103,979,118 (GRCm39)	missense	possibly damaging	0.92
R5700:Trim34b	UTSW	7	103,985,618 (GRCm39)	missense	probably damaging	1.00
R5759:Trim34b	UTSW	7	103,980,640 (GRCm39)	missense	possibly damaging	0.46
R6236:Trim34b	UTSW	7	103,985,525 (GRCm39)	missense	probably damaging	0.99
R6364:Trim34b	UTSW	7	103,985,733 (GRCm39)	missense	probably damaging	0.99
R7034:Trim34b	UTSW	7	103,978,743 (GRCm39)	start gained	probably benign
R7036:Trim34b	UTSW	7	103,978,743 (GRCm39)	start gained	probably benign
R7392:Trim34b	UTSW	7	103,985,604 (GRCm39)	missense	probably benign	0.00
R7405:Trim34b	UTSW	7	103,985,690 (GRCm39)	missense	probably damaging	1.00
R7516:Trim34b	UTSW	7	103,978,918 (GRCm39)	missense	probably damaging	1.00
R7646:Trim34b	UTSW	7	103,984,559 (GRCm39)	missense	probably damaging	0.97
R7909:Trim34b	UTSW	7	103,979,731 (GRCm39)	missense	probably benign	0.01
R8396:Trim34b	UTSW	7	103,979,083 (GRCm39)	missense	probably damaging	1.00
R8472:Trim34b	UTSW	7	103,980,545 (GRCm39)	missense	probably benign	0.00
R8806:Trim34b	UTSW	7	103,985,319 (GRCm39)	missense	probably damaging	1.00
R9476:Trim34b	UTSW	7	103,980,503 (GRCm39)	missense	probably damaging	1.00
R9510:Trim34b	UTSW	7	103,980,503 (GRCm39)	missense	probably damaging	1.00
R9645:Trim34b	UTSW	7	103,980,474 (GRCm39)	missense	probably benign	0.12
Z1176:Trim34b	UTSW	7	103,984,521 (GRCm39)	missense	probably damaging	1.00
Z1177:Trim34b	UTSW	7	103,980,560 (GRCm39)	missense	possibly damaging	0.79

Predicted Primers

PCR Primer
(F):5'- TGGGTGAAAATTGAGAGCTTTC -3'
(R):5'- GCTTCAATTTAACCTCCCCGAG -3'

Sequencing Primer
(F):5'- GTGAAAATTGAGAGCTTTCAACCATC -3'
(R):5'- CATTTGCCAGATGTTTATTAGCCTG -3'

Posted On

2019-06-26