Incidental Mutation 'R7237:Vps11'
ID 562907
Institutional Source Beutler Lab
Gene Symbol Vps11
Ensembl Gene ENSMUSG00000032127
Gene Name VPS11, CORVET/HOPS core subunit
Synonyms 1200011A11Rik
MMRRC Submission 045344-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7237 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 44259046-44272967 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 44265803 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Aspartic acid at position 492 (V492D)
Ref Sequence ENSEMBL: ENSMUSP00000034644 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034644] [ENSMUST00000213249] [ENSMUST00000213740] [ENSMUST00000214510]
AlphaFold Q91W86
Predicted Effect probably damaging
Transcript: ENSMUST00000034644
AA Change: V492D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000034644
Gene: ENSMUSG00000032127
AA Change: V492D

DomainStartEndE-ValueType
low complexity region 26 40 N/A INTRINSIC
SCOP:d1erja_ 59 292 3e-10 SMART
Blast:WD40 73 117 2e-22 BLAST
Blast:WD40 125 168 9e-24 BLAST
Blast:WD40 175 214 6e-16 BLAST
Blast:WD40 219 259 2e-20 BLAST
Pfam:Clathrin 412 548 2.7e-16 PFAM
coiled coil region 775 813 N/A INTRINSIC
RING 822 860 6.14e-5 SMART
Pfam:VPS11_C 862 908 5.2e-22 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000213249
Predicted Effect probably benign
Transcript: ENSMUST00000213740
Predicted Effect probably benign
Transcript: ENSMUST00000214460
Predicted Effect probably benign
Transcript: ENSMUST00000214510
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency 98% (83/85)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human homolog of yeast class C Vps11 protein. The mammalian class C Vps proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]
Allele List at MGI

All alleles(8) : Targeted(4) Gene trapped(4)

Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arhgap21 A T 2: 20,854,783 (GRCm39) C1536* probably null Het
Armc9 C A 1: 86,092,571 (GRCm39) Q169K possibly damaging Het
Aspm T A 1: 139,405,667 (GRCm39) M1518K possibly damaging Het
AU018091 A G 7: 3,209,006 (GRCm39) I360T probably benign Het
BB014433 C A 8: 15,091,765 (GRCm39) V363L probably benign Het
Bcam T C 7: 19,503,232 (GRCm39) probably null Het
Cacna1g T C 11: 94,328,705 (GRCm39) S1071G probably benign Het
Card9 A T 2: 26,246,787 (GRCm39) S354T probably benign Het
Ccdc87 A G 19: 4,889,790 (GRCm39) N94S probably benign Het
Cdc27 A G 11: 104,408,245 (GRCm39) V555A probably benign Het
Coro1a T A 7: 126,299,478 (GRCm39) D411V probably benign Het
Cybrd1 GGTCCTGCAC G 2: 70,948,553 (GRCm39) probably benign Het
Cyth1 A T 11: 118,076,321 (GRCm39) I95N probably damaging Het
Dnah7b A T 1: 46,179,126 (GRCm39) E933V probably damaging Het
Dync2h1 A T 9: 6,993,966 (GRCm39) I3968N probably benign Het
Fam184a T C 10: 53,510,489 (GRCm39) probably benign Het
Fat3 G A 9: 16,288,510 (GRCm39) L338F probably damaging Het
Fcgr3 A G 1: 170,886,870 (GRCm39) L18P probably damaging Het
Gbp5 T C 3: 142,213,461 (GRCm39) V459A probably benign Het
Gja4 A T 4: 127,205,956 (GRCm39) M269K probably benign Het
Gm4787 A G 12: 81,424,442 (GRCm39) V572A probably damaging Het
Grin2d G T 7: 45,515,600 (GRCm39) S131* probably null Het
Gys1 A G 7: 45,104,586 (GRCm39) D671G probably benign Het
Haspin T C 11: 73,027,712 (GRCm39) N459S probably benign Het
Hdac10 G T 15: 89,009,580 (GRCm39) Q451K probably benign Het
Hdac9 T C 12: 34,424,139 (GRCm39) probably null Het
Hmcn1 A G 1: 150,598,394 (GRCm39) V1636A probably damaging Het
Hpca A G 4: 129,012,407 (GRCm39) L43P probably damaging Het
Hycc2 G A 1: 58,569,107 (GRCm39) Q491* probably null Het
Insm1 C A 2: 146,064,448 (GRCm39) A88E possibly damaging Het
Itga9 A G 9: 118,465,670 (GRCm39) K175E probably benign Het
Kif13a A G 13: 46,962,632 (GRCm39) probably null Het
Kif20b T A 19: 34,928,005 (GRCm39) L1089H probably damaging Het
Lamp5 A T 2: 135,901,755 (GRCm39) H152L probably benign Het
Lrp4 T C 2: 91,303,528 (GRCm39) F76L probably benign Het
Magi3 T C 3: 103,935,227 (GRCm39) D902G probably damaging Het
Map10 C T 8: 126,397,963 (GRCm39) P452L probably benign Het
Mapk6 A G 9: 75,304,895 (GRCm39) L174P probably damaging Het
Meak7 C T 8: 120,489,054 (GRCm39) G410S probably damaging Het
Ndufa4 C T 6: 11,906,018 (GRCm39) probably null Het
Nedd4 A T 9: 72,632,346 (GRCm39) E393D probably benign Het
Nlrp4b G A 7: 10,449,143 (GRCm39) V449I probably benign Het
Nufip2 T A 11: 77,583,596 (GRCm39) N503K probably benign Het
Or10ac1 T C 6: 42,515,581 (GRCm39) D125G probably damaging Het
Or6y1 C T 1: 174,276,905 (GRCm39) R239C probably benign Het
P4ha1 A G 10: 59,184,065 (GRCm39) T176A probably benign Het
Palm3 A G 8: 84,756,117 (GRCm39) K543R probably benign Het
Parvg G A 15: 84,225,557 (GRCm39) A302T probably benign Het
Pcdh15 A G 10: 74,420,023 (GRCm39) D1227G possibly damaging Het
Pdzd8 C T 19: 59,333,571 (GRCm39) G150D probably damaging Het
Pitpnm2 A G 5: 124,263,360 (GRCm39) probably null Het
Pld5 T C 1: 176,102,301 (GRCm39) Q47R possibly damaging Het
Ppp2r5d T C 17: 46,997,206 (GRCm39) S329G possibly damaging Het
Prss56 T C 1: 87,112,637 (GRCm39) V144A probably damaging Het
Psg28 A T 7: 18,161,769 (GRCm39) Y245N possibly damaging Het
Ptpn3 C T 4: 57,239,625 (GRCm39) V302I probably damaging Het
Ptprn2 A G 12: 117,125,347 (GRCm39) H627R probably benign Het
Rasgrp2 A T 19: 6,454,838 (GRCm39) H226L possibly damaging Het
Rbm20 C T 19: 53,839,930 (GRCm39) T973M probably benign Het
Rigi T A 4: 40,205,938 (GRCm39) I885F probably benign Het
Riok2 T A 17: 17,598,045 (GRCm39) L44Q probably damaging Het
Rusc1 G T 3: 88,998,805 (GRCm39) Q326K possibly damaging Het
Rxylt1 A T 10: 121,917,523 (GRCm39) L330* probably null Het
Sart3 A T 5: 113,892,307 (GRCm39) H397Q possibly damaging Het
Sec31b T A 19: 44,506,147 (GRCm39) T920S probably damaging Het
Serpinb13 A G 1: 106,926,679 (GRCm39) E225G probably damaging Het
Slc25a47 T C 12: 108,821,386 (GRCm39) L165P probably damaging Het
Slc2a10 G A 2: 165,357,197 (GRCm39) V286I probably benign Het
Slc39a13 G T 2: 90,895,979 (GRCm39) T174N probably benign Het
Slc7a13 T A 4: 19,839,364 (GRCm39) N322K probably benign Het
Stk38 T C 17: 29,193,620 (GRCm39) T326A possibly damaging Het
Sult1a1 T C 7: 126,272,622 (GRCm39) M244V probably benign Het
Tas2r144 C T 6: 42,192,800 (GRCm39) T180I probably damaging Het
Tbc1d12 T A 19: 38,887,346 (GRCm39) M366K probably benign Het
Terb1 T C 8: 105,221,959 (GRCm39) I147V possibly damaging Het
Tnik T C 3: 28,692,568 (GRCm39) Y820H probably damaging Het
Tnxb C A 17: 34,901,170 (GRCm39) L995I possibly damaging Het
Trim34b A G 7: 103,978,794 (GRCm39) T14A possibly damaging Het
Urb1 T C 16: 90,588,054 (GRCm39) E418G probably damaging Het
Vmn1r12 T A 6: 57,136,550 (GRCm39) C216S possibly damaging Het
Vmn2r90 T A 17: 17,924,249 (GRCm39) V16E possibly damaging Het
Wdr62 A C 7: 29,969,869 (GRCm39) probably null Het
Zc3h14 T A 12: 98,746,408 (GRCm39) M539K probably benign Het
Zfp871 A T 17: 32,994,289 (GRCm39) H295Q probably damaging Het
Other mutations in Vps11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01977:Vps11 APN 9 44,267,516 (GRCm39) splice site probably benign
IGL03135:Vps11 APN 9 44,267,653 (GRCm39) missense probably benign 0.39
PIT4696001:Vps11 UTSW 9 44,269,486 (GRCm39) missense possibly damaging 0.89
R0042:Vps11 UTSW 9 44,267,588 (GRCm39) nonsense probably null
R0042:Vps11 UTSW 9 44,267,588 (GRCm39) nonsense probably null
R0122:Vps11 UTSW 9 44,265,809 (GRCm39) missense probably damaging 1.00
R0335:Vps11 UTSW 9 44,265,135 (GRCm39) missense probably null 0.02
R0714:Vps11 UTSW 9 44,270,953 (GRCm39) missense possibly damaging 0.90
R1068:Vps11 UTSW 9 44,264,316 (GRCm39) missense probably damaging 1.00
R1873:Vps11 UTSW 9 44,271,233 (GRCm39) missense probably damaging 1.00
R1991:Vps11 UTSW 9 44,270,524 (GRCm39) missense probably damaging 0.97
R2068:Vps11 UTSW 9 44,269,613 (GRCm39) missense probably damaging 0.99
R2084:Vps11 UTSW 9 44,264,558 (GRCm39) missense probably benign 0.14
R2103:Vps11 UTSW 9 44,270,524 (GRCm39) missense probably damaging 0.97
R2119:Vps11 UTSW 9 44,260,294 (GRCm39) missense probably benign 0.01
R4160:Vps11 UTSW 9 44,267,017 (GRCm39) missense probably damaging 0.98
R4161:Vps11 UTSW 9 44,267,017 (GRCm39) missense probably damaging 0.98
R4564:Vps11 UTSW 9 44,272,894 (GRCm39) missense probably damaging 1.00
R4879:Vps11 UTSW 9 44,264,597 (GRCm39) missense probably benign
R5629:Vps11 UTSW 9 44,267,673 (GRCm39) missense probably damaging 1.00
R5910:Vps11 UTSW 9 44,270,432 (GRCm39) splice site probably null
R5988:Vps11 UTSW 9 44,265,221 (GRCm39) missense probably benign 0.01
R6430:Vps11 UTSW 9 44,272,847 (GRCm39) missense probably benign 0.11
R7002:Vps11 UTSW 9 44,266,376 (GRCm39) missense probably damaging 1.00
R7147:Vps11 UTSW 9 44,266,379 (GRCm39) nonsense probably null
R7261:Vps11 UTSW 9 44,265,800 (GRCm39) missense probably damaging 1.00
R7577:Vps11 UTSW 9 44,260,258 (GRCm39) missense probably benign 0.01
R8093:Vps11 UTSW 9 44,267,529 (GRCm39) missense probably damaging 1.00
R8142:Vps11 UTSW 9 44,265,852 (GRCm39) missense probably benign 0.05
R8238:Vps11 UTSW 9 44,264,057 (GRCm39) missense probably benign 0.08
R8366:Vps11 UTSW 9 44,267,052 (GRCm39) nonsense probably null
R8374:Vps11 UTSW 9 44,267,706 (GRCm39) missense probably benign
R8731:Vps11 UTSW 9 44,265,756 (GRCm39) missense probably benign 0.00
R8742:Vps11 UTSW 9 44,267,070 (GRCm39) utr 3 prime probably benign
R9420:Vps11 UTSW 9 44,267,719 (GRCm39) missense probably benign 0.14
R9474:Vps11 UTSW 9 44,260,290 (GRCm39) nonsense probably null
R9625:Vps11 UTSW 9 44,265,738 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GAAGGGCTTCCTGATAGTTCTG -3'
(R):5'- GCAAAAGGCTGGTTGGCATG -3'

Sequencing Primer
(F):5'- TGAAGAAGTGCCCCGGTC -3'
(R):5'- GTTTTTCAAGCCAGGATGTAATTGCC -3'
Posted On 2019-06-26