Incidental Mutation 'R7238:Dennd4a'
ID 563001
Institutional Source Beutler Lab
Gene Symbol Dennd4a
Ensembl Gene ENSMUSG00000053641
Gene Name DENN/MADD domain containing 4A
Synonyms F730015K02Rik
MMRRC Submission 045345-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.432) question?
Stock # R7238 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 64811340-64919667 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to A at 64861956 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Threonine to Lysine at position 408 (T408K)
Ref Sequence ENSEMBL: ENSMUSP00000037915 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038890]
AlphaFold E9Q8V6
Predicted Effect probably damaging
Transcript: ENSMUST00000038890
AA Change: T408K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000037915
Gene: ENSMUSG00000053641
AA Change: T408K

DomainStartEndE-ValueType
internal_repeat_1 45 93 3.26e-5 PROSPERO
uDENN 169 276 1.71e-28 SMART
DENN 309 493 2.4e-73 SMART
dDENN 559 633 4.15e-27 SMART
low complexity region 724 735 N/A INTRINSIC
low complexity region 936 950 N/A INTRINSIC
low complexity region 1176 1191 N/A INTRINSIC
low complexity region 1249 1262 N/A INTRINSIC
low complexity region 1402 1417 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.9%
Validation Efficiency 97% (104/107)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DENN domain-containing protein that may function as a guanine nucleotide exchange factor that specifically activates ras-related protein Rab-10. This protein also contains a interferon stimulated response element-binding domain and may be involved in regulating the v-myc avian myelocytomatosis viral (MYC) oncogene. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Mar 2016]
Allele List at MGI
Other mutations in this stock
Total: 106 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik A T 3: 138,069,951 (GRCm38) T1634S probably damaging Het
4930402H24Rik C A 2: 130,806,788 (GRCm38) R258L unknown Het
4933402N22Rik T C 5: 11,920,745 (GRCm38) I127T Het
5830473C10Rik A T 5: 90,579,660 (GRCm38) Y379F probably damaging Het
Adgrl1 T A 8: 83,939,064 (GRCm38) M1460K probably damaging Het
Adig T A 2: 158,505,853 (GRCm38) L29Q unknown Het
Adnp T G 2: 168,183,967 (GRCm38) K469N probably damaging Het
Akap3 A G 6: 126,865,237 (GRCm38) D273G probably benign Het
Ankrd34b T C 13: 92,438,631 (GRCm38) Y124H possibly damaging Het
Ap2b1 T G 11: 83,333,122 (GRCm38) F221C possibly damaging Het
Atp2c2 A G 8: 119,742,421 (GRCm38) I358V possibly damaging Het
BC051665 G A 13: 60,782,722 (GRCm38) T272I probably benign Het
BC117090 C T 16: 36,321,831 (GRCm38) G61D probably benign Het
Cdan1 G T 2: 120,730,302 (GRCm38) A262E probably benign Het
Ces1d C T 8: 93,178,135 (GRCm38) V326I probably benign Het
Chd3 T C 11: 69,364,047 (GRCm38) R156G probably benign Het
Clip1 C T 5: 123,613,265 (GRCm38) E818K Het
Col6a4 C T 9: 106,000,320 (GRCm38) V2153M probably damaging Het
Crlf3 T C 11: 80,056,525 (GRCm38) N296D possibly damaging Het
D130052B06Rik A G 11: 33,623,594 (GRCm38) I109V probably benign Het
Dcaf5 G T 12: 80,338,709 (GRCm38) T881K probably benign Het
Dnah2 A G 11: 69,459,146 (GRCm38) probably null Het
Eif2ak2 C T 17: 78,866,331 (GRCm38) V273I probably benign Het
Elac1 C T 18: 73,739,288 (GRCm38) G212D probably damaging Het
Ercc6l2 A G 13: 63,865,984 (GRCm38) D623G probably damaging Het
Exo1 T C 1: 175,888,847 (GRCm38) F177L probably damaging Het
Fat4 A G 3: 38,890,413 (GRCm38) T1152A probably benign Het
Fbxl12 G T 9: 20,618,413 (GRCm38) probably null Het
Fbxo43 T C 15: 36,151,825 (GRCm38) Y582C probably damaging Het
Fsip2 T A 2: 82,982,140 (GRCm38) N2934K possibly damaging Het
Gm4951 A G 18: 60,246,283 (GRCm38) S297G possibly damaging Het
Gm8300 A T 12: 87,517,236 (GRCm38) K114* probably null Het
Gna12 A G 5: 140,830,092 (GRCm38) S69P probably damaging Het
Gpatch8 C A 11: 102,478,528 (GRCm38) G1395C probably damaging Het
Gpr137c A G 14: 45,278,691 (GRCm38) Y294C probably damaging Het
Greb1 A G 12: 16,674,672 (GRCm38) S1834P probably damaging Het
Grin2b T C 6: 135,780,251 (GRCm38) D404G probably damaging Het
Hectd2 A T 19: 36,597,078 (GRCm38) N236I probably damaging Het
Hhip C T 8: 79,987,012 (GRCm38) V562I probably benign Het
Hipk2 G T 6: 38,716,057 (GRCm38) T867N probably benign Het
Hmgcl T C 4: 135,962,113 (GRCm38) V294A possibly damaging Het
Hnrnpl T A 7: 28,813,975 (GRCm38) F158I Het
Hspa5 T C 2: 34,772,371 (GRCm38) V17A unknown Het
Hspg2 T C 4: 137,508,393 (GRCm38) V168A probably damaging Het
Idh1 A G 1: 65,166,125 (GRCm38) F227S probably damaging Het
Immp2l T C 12: 41,110,916 (GRCm38) V71A possibly damaging Het
Iqce G A 5: 140,689,958 (GRCm38) R193* probably null Het
Kcnq5 T C 1: 21,402,302 (GRCm38) D907G probably benign Het
Krt17 T A 11: 100,257,787 (GRCm38) T306S probably benign Het
Lhx3 T C 2: 26,202,997 (GRCm38) D149G probably damaging Het
Lrrc73 G A 17: 46,254,562 (GRCm38) R73H probably damaging Het
Mgat5b T C 11: 116,984,983 (GRCm38) S678P probably benign Het
Mink1 T C 11: 70,611,479 (GRCm38) probably null Het
Mroh5 T G 15: 73,791,429 (GRCm38) probably null Het
Muc5ac G C 7: 141,809,687 (GRCm38) probably benign Het
Muc5ac T A 7: 141,809,517 (GRCm38) H2188Q unknown Het
Musk G A 4: 58,344,312 (GRCm38) G305D probably benign Het
Mx1 A G 16: 97,448,296 (GRCm38) I347T unknown Het
Mybbp1a G T 11: 72,443,512 (GRCm38) V198F probably damaging Het
Mycbp2 A G 14: 103,156,297 (GRCm38) S2943P probably damaging Het
Myo18a G A 11: 77,842,233 (GRCm38) R1363K probably damaging Het
Nav3 T A 10: 109,853,324 (GRCm38) D364V possibly damaging Het
Olfr127 T C 17: 37,904,437 (GRCm38) L297S probably benign Het
Olfr178 T A 16: 58,889,889 (GRCm38) E110D probably damaging Het
Olfr309 T C 7: 86,306,591 (GRCm38) H174R probably damaging Het
Olfr341 T A 2: 36,479,714 (GRCm38) N139Y possibly damaging Het
Olfr385 A T 11: 73,589,735 (GRCm38) M1K probably null Het
Pecr T C 1: 72,259,433 (GRCm38) D276G probably damaging Het
Pkd1l3 GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA 8: 109,624,195 (GRCm38) probably benign Het
Ppp1cb A T 5: 32,491,032 (GRCm38) T320S probably benign Het
Ppp1r9a G T 6: 5,159,716 (GRCm38) K1084N probably damaging Het
Prdm2 A G 4: 143,135,821 (GRCm38) S300P probably benign Het
Prkg1 C T 19: 30,624,690 (GRCm38) V389I probably damaging Het
Psg25 C T 7: 18,532,202 (GRCm38) probably benign Het
Ptpn6 A G 6: 124,721,858 (GRCm38) S498P possibly damaging Het
Pus3 A G 9: 35,566,669 (GRCm38) H399R probably benign Het
Pus7 T C 5: 23,778,452 (GRCm38) T6A probably benign Het
Rnf169 A G 7: 99,925,747 (GRCm38) V547A probably benign Het
Rsf1 GGCGGCGGC GGCGGCGGCCGCGGCGGC 7: 97,579,921 (GRCm38) probably benign Het
Ryr1 C T 7: 29,095,382 (GRCm38) D1194N probably benign Het
Scn5a T C 9: 119,491,544 (GRCm38) M1490V possibly damaging Het
Sec23b A G 2: 144,590,338 (GRCm38) D756G possibly damaging Het
Selenoo T A 15: 89,089,224 (GRCm38) M39K probably benign Het
Sept8 T G 11: 53,536,692 (GRCm38) V246G possibly damaging Het
Serpina3k T A 12: 104,343,108 (GRCm38) N270K probably damaging Het
Setd5 G A 6: 113,121,130 (GRCm38) R710H probably damaging Het
Sirt4 A T 5: 115,482,990 (GRCm38) I41N possibly damaging Het
Slc26a9 T A 1: 131,758,818 (GRCm38) Y425* probably null Het
Slc4a9 A G 18: 36,529,720 (GRCm38) E176G probably benign Het
Spidr A T 16: 15,966,816 (GRCm38) W463R probably benign Het
Tenm4 G A 7: 96,553,496 (GRCm38) R106H probably benign Het
Tmcc1 G A 6: 116,134,237 (GRCm38) Q28* probably null Het
Tmem52b A G 6: 129,516,688 (GRCm38) E88G probably damaging Het
Trpc7 A T 13: 56,826,897 (GRCm38) I402K probably benign Het
Tshz3 T C 7: 36,770,097 (GRCm38) Y504H probably damaging Het
Ttn G A 2: 76,881,328 (GRCm38) R8290C unknown Het
Ttn T C 2: 76,712,205 (GRCm38) E33479G possibly damaging Het
Urb1 T C 16: 90,752,115 (GRCm38) D2235G possibly damaging Het
Usp10 T C 8: 119,941,544 (GRCm38) F195L probably benign Het
Vmn1r31 A T 6: 58,472,873 (GRCm38) F2L Het
Vmn2r109 C T 17: 20,541,074 (GRCm38) V674M probably damaging Het
Vmn2r12 G A 5: 109,097,789 (GRCm38) P26S possibly damaging Het
Vmn2r61 T A 7: 42,267,205 (GRCm38) M414K possibly damaging Het
Yipf3 T C 17: 46,251,659 (GRCm38) V330A probably benign Het
Zic4 A T 9: 91,379,397 (GRCm38) H235L probably benign Het
Zxdc T A 6: 90,369,660 (GRCm38) W16R unknown Het
Other mutations in Dennd4a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00476:Dennd4a APN 9 64,911,762 (GRCm38) missense probably damaging 1.00
IGL01610:Dennd4a APN 9 64,906,884 (GRCm38) missense probably damaging 0.99
IGL01788:Dennd4a APN 9 64,842,621 (GRCm38) missense probably benign 0.00
IGL01827:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01828:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01829:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01979:Dennd4a APN 9 64,894,409 (GRCm38) missense probably benign 0.00
IGL02100:Dennd4a APN 9 64,909,706 (GRCm38) splice site probably benign
IGL02339:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02341:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02584:Dennd4a APN 9 64,851,298 (GRCm38) missense probably damaging 1.00
IGL02607:Dennd4a APN 9 64,862,327 (GRCm38) missense probably damaging 0.99
IGL02654:Dennd4a APN 9 64,910,191 (GRCm38) splice site probably benign
IGL02701:Dennd4a APN 9 64,897,353 (GRCm38) missense possibly damaging 0.50
IGL03051:Dennd4a APN 9 64,862,414 (GRCm38) missense probably damaging 1.00
IGL03257:Dennd4a APN 9 64,871,874 (GRCm38) missense possibly damaging 0.93
IGL03346:Dennd4a APN 9 64,888,526 (GRCm38) missense possibly damaging 0.47
IGL03349:Dennd4a APN 9 64,888,974 (GRCm38) missense probably damaging 1.00
IGL03398:Dennd4a APN 9 64,871,882 (GRCm38) missense probably benign 0.32
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0129:Dennd4a UTSW 9 64,893,294 (GRCm38) missense probably damaging 1.00
R0220:Dennd4a UTSW 9 64,852,445 (GRCm38) missense probably damaging 1.00
R0396:Dennd4a UTSW 9 64,862,391 (GRCm38) missense probably damaging 1.00
R0881:Dennd4a UTSW 9 64,851,383 (GRCm38) critical splice donor site probably null
R1225:Dennd4a UTSW 9 64,911,675 (GRCm38) missense probably benign 0.03
R1311:Dennd4a UTSW 9 64,910,004 (GRCm38) missense probably benign 0.34
R1448:Dennd4a UTSW 9 64,906,045 (GRCm38) missense possibly damaging 0.95
R1450:Dennd4a UTSW 9 64,911,665 (GRCm38) missense probably benign 0.03
R1630:Dennd4a UTSW 9 64,871,882 (GRCm38) missense probably benign 0.32
R1709:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R1824:Dennd4a UTSW 9 64,859,358 (GRCm38) critical splice donor site probably null
R1851:Dennd4a UTSW 9 64,862,030 (GRCm38) missense probably damaging 1.00
R1870:Dennd4a UTSW 9 64,897,234 (GRCm38) missense probably benign 0.00
R1900:Dennd4a UTSW 9 64,897,336 (GRCm38) missense probably damaging 0.99
R1911:Dennd4a UTSW 9 64,889,086 (GRCm38) missense probably damaging 1.00
R1938:Dennd4a UTSW 9 64,842,490 (GRCm38) missense probably damaging 1.00
R1954:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R1955:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R2049:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R2129:Dennd4a UTSW 9 64,905,974 (GRCm38) splice site probably null
R2138:Dennd4a UTSW 9 64,889,337 (GRCm38) missense probably damaging 1.00
R2929:Dennd4a UTSW 9 64,852,417 (GRCm38) missense possibly damaging 0.85
R3083:Dennd4a UTSW 9 64,906,081 (GRCm38) missense probably benign 0.03
R3108:Dennd4a UTSW 9 64,912,387 (GRCm38) missense probably benign 0.23
R3176:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3177:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3276:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3277:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3890:Dennd4a UTSW 9 64,872,028 (GRCm38) missense probably damaging 1.00
R3953:Dennd4a UTSW 9 64,852,575 (GRCm38) missense probably damaging 1.00
R3963:Dennd4a UTSW 9 64,862,331 (GRCm38) missense probably damaging 1.00
R4059:Dennd4a UTSW 9 64,911,892 (GRCm38) missense possibly damaging 0.92
R4499:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4500:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4501:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4671:Dennd4a UTSW 9 64,894,407 (GRCm38) missense probably benign
R4701:Dennd4a UTSW 9 64,897,357 (GRCm38) missense possibly damaging 0.91
R4821:Dennd4a UTSW 9 64,897,249 (GRCm38) missense possibly damaging 0.92
R4829:Dennd4a UTSW 9 64,889,056 (GRCm38) missense probably damaging 1.00
R4876:Dennd4a UTSW 9 64,896,590 (GRCm38) missense probably benign
R4881:Dennd4a UTSW 9 64,838,844 (GRCm38) missense possibly damaging 0.77
R4962:Dennd4a UTSW 9 64,906,003 (GRCm38) missense probably benign 0.00
R5225:Dennd4a UTSW 9 64,888,928 (GRCm38) missense possibly damaging 0.94
R5557:Dennd4a UTSW 9 64,904,227 (GRCm38) missense probably benign 0.07
R5649:Dennd4a UTSW 9 64,851,209 (GRCm38) splice site probably null
R5868:Dennd4a UTSW 9 64,896,729 (GRCm38) missense probably benign 0.02
R5876:Dennd4a UTSW 9 64,911,755 (GRCm38) missense probably damaging 1.00
R6052:Dennd4a UTSW 9 64,886,945 (GRCm38) missense probably damaging 1.00
R6411:Dennd4a UTSW 9 64,871,899 (GRCm38) missense probably benign 0.04
R6596:Dennd4a UTSW 9 64,852,420 (GRCm38) missense probably damaging 1.00
R6668:Dennd4a UTSW 9 64,886,965 (GRCm38) missense probably damaging 1.00
R6915:Dennd4a UTSW 9 64,852,489 (GRCm38) nonsense probably null
R7056:Dennd4a UTSW 9 64,906,923 (GRCm38) missense possibly damaging 0.89
R7107:Dennd4a UTSW 9 64,894,399 (GRCm38) missense possibly damaging 0.79
R7203:Dennd4a UTSW 9 64,896,474 (GRCm38) missense probably benign 0.05
R7373:Dennd4a UTSW 9 64,897,269 (GRCm38) missense probably benign 0.01
R7454:Dennd4a UTSW 9 64,852,570 (GRCm38) missense probably damaging 1.00
R7546:Dennd4a UTSW 9 64,873,044 (GRCm38) missense probably damaging 1.00
R7590:Dennd4a UTSW 9 64,888,587 (GRCm38) missense probably benign 0.01
R7662:Dennd4a UTSW 9 64,852,431 (GRCm38) missense probably damaging 1.00
R7782:Dennd4a UTSW 9 64,906,920 (GRCm38) missense probably damaging 0.98
R7909:Dennd4a UTSW 9 64,872,993 (GRCm38) critical splice acceptor site probably null
R7976:Dennd4a UTSW 9 64,852,512 (GRCm38) missense possibly damaging 0.95
R8026:Dennd4a UTSW 9 64,873,030 (GRCm38) missense probably damaging 1.00
R8034:Dennd4a UTSW 9 64,888,568 (GRCm38) missense probably benign 0.01
R8089:Dennd4a UTSW 9 64,849,175 (GRCm38) missense probably damaging 1.00
R8298:Dennd4a UTSW 9 64,906,875 (GRCm38) missense probably benign 0.00
R8397:Dennd4a UTSW 9 64,889,109 (GRCm38) missense probably benign
R8425:Dennd4a UTSW 9 64,838,974 (GRCm38) missense probably damaging 1.00
R8495:Dennd4a UTSW 9 64,886,879 (GRCm38) missense probably damaging 1.00
R8855:Dennd4a UTSW 9 64,912,390 (GRCm38) missense probably benign
R9219:Dennd4a UTSW 9 64,889,094 (GRCm38) missense probably damaging 0.96
R9275:Dennd4a UTSW 9 64,842,624 (GRCm38) missense probably damaging 1.00
R9376:Dennd4a UTSW 9 64,912,692 (GRCm38) missense probably benign 0.00
R9485:Dennd4a UTSW 9 64,907,106 (GRCm38) nonsense probably null
R9672:Dennd4a UTSW 9 64,893,358 (GRCm38) missense probably benign
R9746:Dennd4a UTSW 9 64,894,511 (GRCm38) missense probably benign
X0026:Dennd4a UTSW 9 64,897,320 (GRCm38) missense possibly damaging 0.67
Z1088:Dennd4a UTSW 9 64,872,022 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCTGTCCTGCCCAACAACAG -3'
(R):5'- CGAAGCATAAGTTATCAGCATAGACAC -3'

Sequencing Primer
(F):5'- CAACAGCACTTACGTTTAAAGTTG -3'
(R):5'- AGGAAATTAAAACTGCTTCAACAATG -3'
Posted On 2019-06-26