Mutagenetix > Incidental Mutation

Incidental Mutation 'R7239:Vmn1r13'

563067

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r13

Ensembl Gene

ENSMUSG00000064259

Gene Name

vomeronasal 1 receptor 13

Synonyms

V1rc5

MMRRC Submission

045346-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.067) question?

Stock #

R7239 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

57186843-57187745 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 57187611 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 257 (M257L)

Ref Sequence

ENSEMBL: ENSMUSP00000154429 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078885] [ENSMUST00000226892] [ENSMUST00000227298] [ENSMUST00000227421]

AlphaFold

G5E8I3

Predicted Effect

probably benign
Transcript: ENSMUST00000078885
AA Change: M257L

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000077924
Gene: ENSMUSG00000064259
AA Change: M257L

Domain	Start	End	E-Value	Type
Pfam:V1R	28	294	3.3e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000226892
AA Change: M257L

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

Predicted Effect

probably benign
Transcript: ENSMUST00000227298
AA Change: M257L

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

Predicted Effect

probably benign
Transcript: ENSMUST00000227421
AA Change: M257L

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

99% (76/77)

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510009E07Rik	A	G	16: 21,472,268 (GRCm39)	V144A	probably damaging	Het
Abca5	A	T	11: 110,217,530 (GRCm39)	Y109N	possibly damaging	Het
Abcb5	T	C	12: 118,892,460 (GRCm39)	Q433R	probably benign	Het
Adamts7	G	A	9: 90,068,610 (GRCm39)		probably null	Het
Adgrv1	T	C	13: 81,624,731 (GRCm39)	D3746G	possibly damaging	Het
Arhgap29	C	T	3: 121,782,599 (GRCm39)	S159L	probably benign	Het
Arhgap5	T	A	12: 52,564,159 (GRCm39)	C377S	probably benign	Het
Atp1a3	G	A	7: 24,700,129 (GRCm39)	P77L	probably damaging	Het
B4galt1	T	C	4: 40,812,754 (GRCm39)	D257G	probably damaging	Het
Bin1	T	A	18: 32,539,224 (GRCm39)	N52K	probably damaging	Het
Catsperg2	A	G	7: 29,409,507 (GRCm39)	M562T	probably benign	Het
Ccdc33	G	A	9: 57,940,192 (GRCm39)	Q713*	probably null	Het
Cd96	A	T	16: 45,929,477 (GRCm39)	L156Q	probably damaging	Het
Clpb	A	G	7: 101,360,662 (GRCm39)	T231A	probably damaging	Het
Dnaaf9	C	A	2: 130,648,708 (GRCm39)	R258L	unknown	Het
Dnmt3a	A	T	12: 3,922,850 (GRCm39)	Q151L	probably benign	Het
Dock2	C	T	11: 34,181,677 (GRCm39)	V1629M	probably benign	Het
Edem1	G	A	6: 108,831,341 (GRCm39)	D601N	probably benign	Het
Eno2	C	T	6: 124,745,228 (GRCm39)	V20M	probably damaging	Het
Eny2	A	C	15: 44,297,250 (GRCm39)	D52A	probably benign	Het
Esp36	T	C	17: 38,728,132 (GRCm39)	R93G	possibly damaging	Het
Fam227a	A	G	15: 79,518,263 (GRCm39)		probably null	Het
Fat4	C	A	3: 39,037,989 (GRCm39)	H3880Q	possibly damaging	Het
Fbxw24	A	T	9: 109,434,598 (GRCm39)	V334E	possibly damaging	Het
Flrt1	T	C	19: 7,073,329 (GRCm39)	Q406R	probably benign	Het
Frmpd2	A	G	14: 33,274,034 (GRCm39)	N1092S	probably benign	Het
Gm904	C	A	13: 50,799,287 (GRCm39)	T82K	probably benign	Het
Gnas	G	C	2: 174,140,408 (GRCm39)	G252R	unknown	Het
Gpatch2l	A	G	12: 86,307,349 (GRCm39)		probably null	Het
H2ac6	A	T	13: 23,867,593 (GRCm39)	I103N	probably damaging	Het
Ift74	T	C	4: 94,541,187 (GRCm39)	V204A	probably benign	Het
Ikzf4	A	G	10: 128,477,113 (GRCm39)	L119P	probably damaging	Het
Ing3	G	A	6: 21,952,193 (GRCm39)	E56K	probably damaging	Het
Klhl25	T	C	7: 75,516,516 (GRCm39)	I474T	probably benign	Het
Klhl5	T	C	5: 65,318,529 (GRCm39)	V556A	probably damaging	Het
Krt14	A	T	11: 100,095,081 (GRCm39)	M382K	probably benign	Het
Lmcd1	T	C	6: 112,292,745 (GRCm39)	V199A	possibly damaging	Het
Lpcat4	T	A	2: 112,073,052 (GRCm39)	F200I	possibly damaging	Het
Lrp1b	T	C	2: 40,894,725 (GRCm39)	T2282A		Het
Lrrk1	T	C	7: 65,911,903 (GRCm39)	T1886A	probably benign	Het
Meis2	T	C	2: 115,889,484 (GRCm39)		probably null	Het
Mki67	C	T	7: 135,301,905 (GRCm39)	R1043K	possibly damaging	Het
Myct1	G	T	10: 5,554,601 (GRCm39)	R156L	possibly damaging	Het
Nckap5l	G	T	15: 99,324,090 (GRCm39)	H804Q	probably damaging	Het
Ndst3	T	G	3: 123,400,555 (GRCm39)	E450D	probably damaging	Het
Nipbl	A	T	15: 8,321,619 (GRCm39)		probably null	Het
Npy	A	G	6: 49,800,587 (GRCm39)	N4D	probably benign	Het
Or7g35	A	T	9: 19,496,487 (GRCm39)	Y218F	probably damaging	Het
Osgin2	T	C	4: 16,008,748 (GRCm39)	S18G	probably benign	Het
Pcdha9	T	G	18: 37,131,551 (GRCm39)	F207V	probably benign	Het
Pcdhb13	A	T	18: 37,577,697 (GRCm39)	I692F	probably damaging	Het
Pde3b	T	A	7: 114,015,384 (GRCm39)	V200E	probably damaging	Het
Ppp6r3	A	T	19: 3,543,981 (GRCm39)	L345I	probably benign	Het
Psd2	G	A	18: 36,113,472 (GRCm39)	A315T	probably damaging	Het
Rnf111	G	A	9: 70,376,655 (GRCm39)	T328I	probably damaging	Het
Rnf213	T	C	11: 119,349,614 (GRCm39)	L3825P		Het
Rtl1	C	T	12: 109,558,909 (GRCm39)	V977I	probably benign	Het
Scn1a	G	A	2: 66,108,000 (GRCm39)		probably null	Het
Slc25a2	G	T	18: 37,770,748 (GRCm39)	N260K	probably benign	Het
Sprtn	T	C	8: 125,626,983 (GRCm39)	V121A	probably damaging	Het
Ssx2ip	T	G	3: 146,133,771 (GRCm39)	L260W	probably damaging	Het
Syde1	G	A	10: 78,424,615 (GRCm39)	R406C	probably damaging	Het
Tab1	A	G	15: 80,017,372 (GRCm39)	R6G	probably benign	Het
Tenm4	G	A	7: 96,202,703 (GRCm39)	R106H	probably benign	Het
Tenm4	G	A	7: 96,385,020 (GRCm39)	V526I	possibly damaging	Het
Tfap2b	T	C	1: 19,304,404 (GRCm39)	F405L	probably damaging	Het
Trbv13-1	C	A	6: 41,093,325 (GRCm39)	T87K	probably benign	Het
Trmt44	G	T	5: 35,732,130 (GRCm39)	A87E	probably benign	Het
Ttll3	CAAAGTAA	CAAAGTAAAGTAA	6: 113,376,118 (GRCm39)		probably null	Het
Ttn	T	C	2: 76,617,634 (GRCm39)	D16279G	probably damaging	Het
Ttn	G	A	2: 76,711,672 (GRCm39)	R8290C	unknown	Het
Ugt2b37	T	A	5: 87,402,590 (GRCm39)	I14L	probably benign	Het
Vmn1r184	C	T	7: 25,966,602 (GRCm39)	P116L	possibly damaging	Het
Zfp426	T	C	9: 20,381,887 (GRCm39)	T367A	probably benign	Het
Zfp647	A	T	15: 76,795,956 (GRCm39)	C235S	probably damaging	Het

Other mutations in Vmn1r13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00870:Vmn1r13	APN	6	57,187,098 (GRCm39)	missense	probably benign	0.10
IGL01511:Vmn1r13	APN	6	57,187,314 (GRCm39)	missense	probably benign	0.00
IGL02412:Vmn1r13	APN	6	57,187,474 (GRCm39)	missense	possibly damaging	0.46
IGL02455:Vmn1r13	APN	6	57,187,457 (GRCm39)	missense	probably damaging	1.00
IGL03046:Vmn1r13	APN	6	57,187,717 (GRCm39)	missense	probably benign
R0285:Vmn1r13	UTSW	6	57,186,979 (GRCm39)	missense	probably benign	0.06
R0304:Vmn1r13	UTSW	6	57,187,611 (GRCm39)	missense	probably benign	0.01
R0385:Vmn1r13	UTSW	6	57,187,690 (GRCm39)	missense	probably benign	0.06
R0402:Vmn1r13	UTSW	6	57,187,083 (GRCm39)	missense	possibly damaging	0.96
R0544:Vmn1r13	UTSW	6	57,187,248 (GRCm39)	missense	probably benign
R0960:Vmn1r13	UTSW	6	57,186,996 (GRCm39)	missense	probably benign	0.06
R1297:Vmn1r13	UTSW	6	57,187,392 (GRCm39)	missense	probably damaging	0.99
R4056:Vmn1r13	UTSW	6	57,186,970 (GRCm39)	missense	probably benign	0.03
R5108:Vmn1r13	UTSW	6	57,186,901 (GRCm39)	missense	probably benign	0.33
R6388:Vmn1r13	UTSW	6	57,186,903 (GRCm39)	missense	probably benign	0.01
R7136:Vmn1r13	UTSW	6	57,187,239 (GRCm39)	missense	possibly damaging	0.93
R7204:Vmn1r13	UTSW	6	57,187,141 (GRCm39)	missense	probably benign	0.13
R7303:Vmn1r13	UTSW	6	57,187,587 (GRCm39)	missense	probably damaging	1.00
R7997:Vmn1r13	UTSW	6	57,187,329 (GRCm39)	missense	possibly damaging	0.81
R8759:Vmn1r13	UTSW	6	57,187,524 (GRCm39)	missense	probably damaging	1.00
R9623:Vmn1r13	UTSW	6	57,187,549 (GRCm39)	missense	probably benign	0.00
X0066:Vmn1r13	UTSW	6	57,187,582 (GRCm39)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- GGAATGGTTGTAACAGTGACAACC -3'
(R):5'- GGCACTGAGTCAGATGTAAAGTC -3'

Sequencing Primer
(F):5'- GACAACCGTCAGAGATGTGTTTC -3'
(R):5'- CTAGTGGCATTTTGACTGC -3'

Posted On

2019-06-26