Mutagenetix > Incidental Mutations

Incidental Mutation 'R7240:Cd69'

563140

Institutional Source

Beutler Lab

Gene Symbol

Cd69

Ensembl Gene

ENSMUSG00000030156

Gene Name

CD69 antigen

Synonyms

VEA, AIM, 5830438K24Rik

MMRRC Submission

Accession Numbers

Genbank: NM_001033122; MGI: 88343

Is this an essential gene?

Probably non essential (E-score: 0.087) question?

Stock #

R7240 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

129267325-129275436 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 129270042 bp

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 112 (S112T)

Ref Sequence

ENSEMBL: ENSMUSP00000032259 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032259] [ENSMUST00000204411]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032259
AA Change: S112T

PolyPhen 2 Score 0.781 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000032259
Gene: ENSMUSG00000030156
AA Change: S112T

Domain	Start	End	E-Value	Type
Blast:CLECT	3	42	3e-8	BLAST
low complexity region	44	61	N/A	INTRINSIC
CLECT	85	195	3e-23	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000204411
AA Change: S71T

PolyPhen 2 Score 0.889 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000144734
Gene: ENSMUSG00000030156
AA Change: S71T

Domain	Start	End	E-Value	Type
CLECT	44	154	1.5e-25	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

96% (50/52)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the calcium dependent lectin superfamily of type II transmembrane receptors. Expression of the encoded protein is induced upon activation of T lymphocytes, and may play a role in proliferation. Furthermore, the protein may act to transmit signals in natural killer cells and platelets. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous mutation of this gene results in slightly increased pre-B and immature B cell numbers in the bone marrow, and increased IgG2a and IgM response to T cell-dependent and T cell-independent antigens. Mutant mice were less prone to collagen inducedarthritis. [provided by MGI curators]

Allele List at MGI

All alleles(2) : Targeted, knock-out(2)

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210017I01Rik	A	G	3: 92,605,075	I59T	unknown	Het
Aspm	C	T	1: 139,478,651	Q1759*	probably null	Het
Atn1	A	T	6: 124,747,898	I124K	unknown	Het
Catsper2	TAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCT	TAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCT	2: 121,397,572		probably benign	Het
Ccdc88c	C	T	12: 100,944,939	V879M	probably benign	Het
Cd300c	A	G	11: 114,959,783	C65R	possibly damaging	Het
Cdh19	T	C	1: 110,893,407	T534A	probably benign	Het
Cdk5rap2	T	A	4: 70,291,908	D701V	probably damaging	Het
D130052B06Rik	A	G	11: 33,623,874	H157R	possibly damaging	Het
Dpf1	T	A	7: 29,311,627	F150L	probably benign	Het
Dsg1c	T	C	18: 20,283,109	L689P	probably damaging	Het
Dstyk	G	A	1: 132,454,123	M538I	probably benign	Het
E4f1	T	A	17: 24,444,325	I669F	probably damaging	Het
Gm7138	T	C	10: 77,776,755	T64A	unknown	Het
Gnai2	A	C	9: 107,615,773	D310E		Het
Iqca	A	G	1: 90,070,550	V567A	possibly damaging	Het
Iqgap1	A	T	7: 80,759,839	N249K	probably benign	Het
Lamc1	A	G	1: 153,234,650	V1093A	possibly damaging	Het
Mfap3	A	G	11: 57,529,756	K188E	probably damaging	Het
N4bp2	T	A	5: 65,794,545	V431D	probably damaging	Het
Notch4	A	G	17: 34,576,471	T792A	probably benign	Het
Ntn4	A	G	10: 93,745,741	H592R	probably damaging	Het
Ofcc1	A	G	13: 40,208,841	C202R	probably benign	Het
Olfr13	A	G	6: 43,174,501	K172E	probably benign	Het
Olfr418	T	C	1: 173,270,994	I273T	probably benign	Het
Olfr476	T	C	7: 107,968,188	S264P	probably benign	Het
Olfr497	A	G	7: 108,422,933	M121V	probably damaging	Het
Olfr922	A	G	9: 38,815,713	D70G	probably benign	Het
Olfr938	A	T	9: 39,078,610	M45K	probably damaging	Het
Parpbp	G	A	10: 88,124,940	T228I	probably damaging	Het
Pcdhgb8	G	A	18: 37,763,703	V609M	probably damaging	Het
Pla2g4d	T	C	2: 120,270,349	N543S	probably damaging	Het
Puf60	A	G	15: 76,072,539		probably benign	Het
Rbm6	A	T	9: 107,852,896	D184E	probably damaging	Het
Rnase9	A	C	14: 51,038,979	S181A	probably benign	Het
Rnpc3	T	A	3: 113,616,831	R270S	probably damaging	Het
Rundc1	T	C	11: 101,431,548		probably null	Het
Ryr1	T	C	7: 29,052,015	S3715G	possibly damaging	Het
Scn3a	A	T	2: 65,469,042	D1373E	possibly damaging	Het
Serpina3k	T	G	12: 104,340,602	I31S	probably benign	Het
Sipa1l2	A	G	8: 125,469,860	F712L	probably damaging	Het
Slc22a29	A	G	19: 8,161,511	V529A	probably damaging	Het
Tdrd3	A	G	14: 87,458,803	N58S	probably benign	Het
Tmc2	C	T	2: 130,234,804	T350I	possibly damaging	Het
Tpst2	T	C	5: 112,307,678	C28R	probably benign	Het
Trbv21	A	T	6: 41,202,958	K69N	probably benign	Het
Trpm2	A	G	10: 77,935,876		probably null	Het
Ttn	A	G	2: 76,848,990	V10796A	unknown	Het
Ush2a	A	G	1: 188,911,661	T4407A	possibly damaging	Het
Vmn2r95	A	G	17: 18,451,963	H726R	probably benign	Het
Zfp777	A	G	6: 48,044,449	S80P	probably benign	Het

Other mutations in Cd69

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00573:Cd69	APN	6	129268320	missense	probably damaging	1.00
IGL02799:Cd69	APN	6	129268260	splice site	probably benign
Jazzed	UTSW	6	129269574	critical splice donor site	probably null
Surrogate	UTSW	6	129269580	missense	probably benign	0.00
3-1:Cd69	UTSW	6	129275249	missense	probably damaging	0.99
R0119:Cd69	UTSW	6	129270062	missense	probably benign	0.01
R0136:Cd69	UTSW	6	129270062	missense	probably benign	0.01
R1185:Cd69	UTSW	6	129270185	missense	probably damaging	1.00
R1185:Cd69	UTSW	6	129270185	missense	probably damaging	1.00
R1185:Cd69	UTSW	6	129270185	missense	probably damaging	1.00
R2327:Cd69	UTSW	6	129271388	missense	probably damaging	1.00
R2352:Cd69	UTSW	6	129269604	missense	probably damaging	1.00
R3955:Cd69	UTSW	6	129268380	splice site	probably null
R4780:Cd69	UTSW	6	129271355	missense	probably damaging	1.00
R5400:Cd69	UTSW	6	129269991	missense	probably benign	0.01
R5522:Cd69	UTSW	6	129271416	missense	probably damaging	0.97
R6594:Cd69	UTSW	6	129269574	critical splice donor site	probably null
R6737:Cd69	UTSW	6	129268299	missense	probably benign	0.04
R6972:Cd69	UTSW	6	129269580	missense	probably benign	0.00
R7694:Cd69	UTSW	6	129270045	missense	possibly damaging	0.91
Z1176:Cd69	UTSW	6	129268342	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GTTCATACAGTGCTCCCTGC -3'
(R):5'- ACTCGGTTTACCTGTGGAGAG -3'

Sequencing Primer
(F):5'- GCCTCCACGACTAAGTTTCG -3'
(R):5'- TTCTTCTGTTACTAAGACAAATGTCC -3'

Posted On

2019-06-26