Incidental Mutation 'R7241:Unc5a'
ID 563231
Institutional Source Beutler Lab
Gene Symbol Unc5a
Ensembl Gene ENSMUSG00000025876
Gene Name unc-5 netrin receptor A
Synonyms Unc5h1
MMRRC Submission 045348-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7241 (G1)
Quality Score 225.009
Status Not validated
Chromosome 13
Chromosomal Location 55097224-55153831 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 55138833 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 71 (T71S)
Ref Sequence ENSEMBL: ENSMUSP00000026994 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026994] [ENSMUST00000109994]
AlphaFold Q8K1S4
Predicted Effect probably damaging
Transcript: ENSMUST00000026994
AA Change: T71S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000026994
Gene: ENSMUSG00000025876
AA Change: T71S

DomainStartEndE-ValueType
signal peptide 1 25 N/A INTRINSIC
SCOP:d1biha1 44 143 1e-4 SMART
IG 155 240 1.8e-5 SMART
TSP1 245 296 1.25e-14 SMART
TSP1 301 350 1.98e-8 SMART
transmembrane domain 360 382 N/A INTRINSIC
ZU5 495 598 3.68e-58 SMART
DEATH 805 896 5.86e-20 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000109994
AA Change: T71S

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000105621
Gene: ENSMUSG00000025876
AA Change: T71S

DomainStartEndE-ValueType
signal peptide 1 25 N/A INTRINSIC
SCOP:d1biha1 44 143 1e-4 SMART
IG 155 240 1.8e-5 SMART
TSP1 245 294 1.98e-8 SMART
transmembrane domain 305 327 N/A INTRINSIC
ZU5 439 542 3.68e-58 SMART
DEATH 749 840 5.86e-20 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] UNC5A belongs to a family of netrin-1 (MIM 601614) receptors thought to mediate the chemorepulsive effect of netrin-1 on specific axons. For more information on UNC5 proteins, see UNC5C (MIM 603610).[supplied by OMIM, Apr 2004]
PHENOTYPE: Homozygous null mice are viable through adulthood but display decreased apoptotic cell death, supernumerary neurons and morphological alterations in the embryonic cervical spinal cord. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca14 A G 7: 119,846,184 (GRCm39) T612A probably damaging Het
Acacb G A 5: 114,383,161 (GRCm39) A2115T possibly damaging Het
Adam32 T C 8: 25,388,510 (GRCm39) K398R probably benign Het
Adam9 T A 8: 25,441,002 (GRCm39) I824F possibly damaging Het
Ahnak A G 19: 8,986,395 (GRCm39) I2560V possibly damaging Het
Ank3 G A 10: 69,542,644 (GRCm39) M1I probably null Het
Anks1b T G 10: 90,348,699 (GRCm39) I789S probably damaging Het
Ap2b1 T A 11: 83,241,931 (GRCm39) N641K probably benign Het
Arhgap33 A G 7: 30,228,146 (GRCm39) L412P probably damaging Het
Atp13a3 T A 16: 30,171,095 (GRCm39) M317L possibly damaging Het
B4galt5 A G 2: 167,148,617 (GRCm39) L167P probably damaging Het
Bace2 T C 16: 97,237,998 (GRCm39) I483T possibly damaging Het
C2cd3 A C 7: 100,056,257 (GRCm39) K177T Het
Ccr4 T C 9: 114,322,024 (GRCm39) T14A probably benign Het
Cep250 A T 2: 155,833,472 (GRCm39) H1799L probably benign Het
Cgnl1 T C 9: 71,632,052 (GRCm39) Q433R probably benign Het
Copb1 C T 7: 113,836,591 (GRCm39) V384M probably damaging Het
Cyp2c50 T A 19: 40,079,012 (GRCm39) N118K probably benign Het
Cyp4a32 A G 4: 115,459,499 (GRCm39) I78V probably benign Het
Cyth4 A G 15: 78,491,245 (GRCm39) K108R probably benign Het
Dnah1 T C 14: 30,986,896 (GRCm39) H3632R probably benign Het
Dnah3 T C 7: 119,542,856 (GRCm39) I540V probably benign Het
Dock4 A G 12: 40,844,859 (GRCm39) Y1174C probably damaging Het
Drd5 A G 5: 38,477,879 (GRCm39) T291A probably damaging Het
Eeig1 A G 2: 32,448,076 (GRCm39) R62G probably benign Het
Fbn1 T C 2: 125,148,415 (GRCm39) N2611S possibly damaging Het
Fcsk A G 8: 111,622,529 (GRCm39) I133T probably benign Het
Fhod3 A G 18: 25,193,409 (GRCm39) E640G probably damaging Het
Flvcr2 T A 12: 85,852,013 (GRCm39) D522E probably benign Het
Ganc T A 2: 120,272,010 (GRCm39) I556K probably damaging Het
Gjc2 T A 11: 59,067,960 (GRCm39) E174V unknown Het
Gzmd G A 14: 56,368,799 (GRCm39) R32C probably damaging Het
Hltf T A 3: 20,119,556 (GRCm39) H200Q probably benign Het
Ift88 A G 14: 57,717,454 (GRCm39) I559M probably damaging Het
Ighv1-62-1 C A 12: 115,350,322 (GRCm39) C115F probably damaging Het
Impdh2 A G 9: 108,440,636 (GRCm39) N279S possibly damaging Het
Itpr1 T C 6: 108,494,581 (GRCm39) probably null Het
Kansl1l T C 1: 66,840,787 (GRCm39) N171S possibly damaging Het
Kif14 T A 1: 136,396,491 (GRCm39) C266S probably benign Het
Kif19b A G 5: 140,447,943 (GRCm39) T137A probably damaging Het
Lrriq1 A C 10: 103,051,834 (GRCm39) V306G probably damaging Het
Mast4 G A 13: 103,470,508 (GRCm39) R65W possibly damaging Het
Mex3d T C 10: 80,223,091 (GRCm39) D55G Het
Mrps27 A T 13: 99,547,788 (GRCm39) K233* probably null Het
Myo1f A G 17: 33,798,902 (GRCm39) N189S probably damaging Het
Nbn A T 4: 15,991,190 (GRCm39) K729N probably benign Het
Or1e35 T C 11: 73,798,058 (GRCm39) S87G probably benign Het
Or8k35 C A 2: 86,424,498 (GRCm39) V225F possibly damaging Het
Pgghg T C 7: 140,525,633 (GRCm39) S479P Het
Plaat5 A G 19: 7,591,946 (GRCm39) T121A probably benign Het
Polr1e A C 4: 45,029,340 (GRCm39) H315P probably damaging Het
Pou6f2 A G 13: 18,299,874 (GRCm39) V595A Het
Prdm15 T C 16: 97,596,941 (GRCm39) D960G possibly damaging Het
Prkcz A T 4: 155,353,516 (GRCm39) M460K probably benign Het
Prkd2 G T 7: 16,591,730 (GRCm39) R587L probably benign Het
Prkn C A 17: 12,073,748 (GRCm39) N355K possibly damaging Het
Rabep1 C A 11: 70,830,815 (GRCm39) T829N probably damaging Het
Rptn A G 3: 93,303,261 (GRCm39) E198G probably benign Het
Ryr2 A T 13: 11,680,799 (GRCm39) I3182N possibly damaging Het
Sectm1a T A 11: 120,960,708 (GRCm39) I36F possibly damaging Het
Sez6l T C 5: 112,621,346 (GRCm39) S243G probably benign Het
Spata31h1 T C 10: 82,122,876 (GRCm39) E3378G probably benign Het
Taf2 T A 15: 54,925,537 (GRCm39) H235L probably benign Het
Tbc1d7 T C 13: 43,306,493 (GRCm39) Q161R probably benign Het
Tfcp2 T C 15: 100,416,468 (GRCm39) T271A possibly damaging Het
Thrsp G T 7: 97,066,295 (GRCm39) T139K probably damaging Het
Timm10 T A 2: 84,660,333 (GRCm39) *91R probably null Het
Tlr11 T A 14: 50,599,598 (GRCm39) I528N possibly damaging Het
Tnnt2 T A 1: 135,779,444 (GRCm39) L278Q probably damaging Het
Toe1 A T 4: 116,664,715 (GRCm39) M1K probably null Het
Trpv5 G A 6: 41,652,242 (GRCm39) R148* probably null Het
Ttll13 A C 7: 79,903,911 (GRCm39) K280Q probably damaging Het
Ttn A G 2: 76,783,550 (GRCm39) V860A unknown Het
Txnip T C 3: 96,466,991 (GRCm39) Y222H probably damaging Het
Ubr4 G A 4: 139,170,725 (GRCm39) S1600N probably damaging Het
Uhrf1 T C 17: 56,622,193 (GRCm39) Y364H probably damaging Het
Vmn1r123 A T 7: 20,896,537 (GRCm39) Y143F possibly damaging Het
Vmn1r180 T A 7: 23,651,891 (GRCm39) I18N probably damaging Het
Washc2 A G 6: 116,185,168 (GRCm39) M1V probably null Het
Zfp174 C A 16: 3,666,111 (GRCm39) H125Q probably benign Het
Zfpl1 T C 19: 6,131,943 (GRCm39) H227R possibly damaging Het
Other mutations in Unc5a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00272:Unc5a APN 13 55,143,633 (GRCm39) missense probably benign 0.00
IGL00339:Unc5a APN 13 55,143,628 (GRCm39) missense possibly damaging 0.89
IGL00924:Unc5a APN 13 55,152,327 (GRCm39) missense probably damaging 0.99
IGL01411:Unc5a APN 13 55,150,741 (GRCm39) missense probably damaging 1.00
IGL01511:Unc5a APN 13 55,152,629 (GRCm39) missense probably damaging 0.97
IGL02430:Unc5a APN 13 55,150,295 (GRCm39) missense probably damaging 1.00
IGL02996:Unc5a APN 13 55,143,991 (GRCm39) missense probably damaging 0.99
IGL03188:Unc5a APN 13 55,147,316 (GRCm39) missense probably damaging 0.98
PIT1430001:Unc5a UTSW 13 55,151,709 (GRCm39) missense probably damaging 1.00
PIT4378001:Unc5a UTSW 13 55,143,681 (GRCm39) missense possibly damaging 0.95
R0009:Unc5a UTSW 13 55,150,692 (GRCm39) missense probably damaging 1.00
R0009:Unc5a UTSW 13 55,150,692 (GRCm39) missense probably damaging 1.00
R0028:Unc5a UTSW 13 55,151,726 (GRCm39) missense possibly damaging 0.70
R0505:Unc5a UTSW 13 55,152,767 (GRCm39) missense probably damaging 1.00
R0744:Unc5a UTSW 13 55,151,746 (GRCm39) missense possibly damaging 0.92
R0745:Unc5a UTSW 13 55,153,068 (GRCm39) frame shift probably null
R0836:Unc5a UTSW 13 55,151,746 (GRCm39) missense possibly damaging 0.92
R1018:Unc5a UTSW 13 55,138,765 (GRCm39) missense possibly damaging 0.81
R1432:Unc5a UTSW 13 55,152,285 (GRCm39) unclassified probably benign
R1469:Unc5a UTSW 13 55,144,232 (GRCm39) missense probably damaging 1.00
R1469:Unc5a UTSW 13 55,144,232 (GRCm39) missense probably damaging 1.00
R1691:Unc5a UTSW 13 55,150,737 (GRCm39) missense probably damaging 1.00
R2132:Unc5a UTSW 13 55,138,896 (GRCm39) missense probably damaging 0.96
R4020:Unc5a UTSW 13 55,151,182 (GRCm39) missense probably damaging 1.00
R4080:Unc5a UTSW 13 55,152,294 (GRCm39) missense possibly damaging 0.62
R4720:Unc5a UTSW 13 55,151,696 (GRCm39) missense probably null 1.00
R4876:Unc5a UTSW 13 55,145,042 (GRCm39) missense probably benign
R4953:Unc5a UTSW 13 55,147,683 (GRCm39) missense probably benign 0.02
R5112:Unc5a UTSW 13 55,151,231 (GRCm39) critical splice donor site probably null
R5593:Unc5a UTSW 13 55,152,747 (GRCm39) missense possibly damaging 0.91
R5903:Unc5a UTSW 13 55,147,503 (GRCm39) missense possibly damaging 0.92
R6521:Unc5a UTSW 13 55,152,748 (GRCm39) missense probably benign 0.01
R6723:Unc5a UTSW 13 55,143,702 (GRCm39) missense probably benign 0.23
R7038:Unc5a UTSW 13 55,152,297 (GRCm39) missense probably damaging 1.00
R7065:Unc5a UTSW 13 55,138,896 (GRCm39) missense probably damaging 1.00
R7365:Unc5a UTSW 13 55,144,386 (GRCm39) missense possibly damaging 0.80
R7487:Unc5a UTSW 13 55,144,362 (GRCm39) missense probably benign 0.40
R7980:Unc5a UTSW 13 55,147,319 (GRCm39) missense possibly damaging 0.57
R8032:Unc5a UTSW 13 55,144,299 (GRCm39) missense possibly damaging 0.65
R8087:Unc5a UTSW 13 55,143,985 (GRCm39) missense probably damaging 1.00
R8910:Unc5a UTSW 13 55,151,401 (GRCm39) missense possibly damaging 0.66
R9126:Unc5a UTSW 13 55,145,774 (GRCm39) missense possibly damaging 0.80
R9492:Unc5a UTSW 13 55,150,288 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGGAAGATCTGGCTCACATC -3'
(R):5'- ATATTCATAGGGTGCCAGGTG -3'

Sequencing Primer
(F):5'- GAAGATCTGGCTCACATCTCCCC -3'
(R):5'- CTTGCCTGGTGATACCGAAG -3'
Posted On 2019-06-26