Incidental Mutation 'R7241:Prdm15'
ID 563244
Institutional Source Beutler Lab
Gene Symbol Prdm15
Ensembl Gene ENSMUSG00000014039
Gene Name PR domain containing 15
Synonyms Zfp298, E130018M06Rik
MMRRC Submission 045348-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7241 (G1)
Quality Score 225.009
Status Not validated
Chromosome 16
Chromosomal Location 97592667-97653050 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 97596941 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 960 (D960G)
Ref Sequence ENSEMBL: ENSMUSP00000113791 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095849] [ENSMUST00000121584] [ENSMUST00000142295]
AlphaFold E9Q8T2
Predicted Effect possibly damaging
Transcript: ENSMUST00000095849
AA Change: D986G

PolyPhen 2 Score 0.504 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000093533
Gene: ENSMUSG00000014039
AA Change: D986G

DomainStartEndE-ValueType
SET 75 191 5.96e-1 SMART
ZnF_C2H2 223 245 3.99e0 SMART
low complexity region 290 303 N/A INTRINSIC
ZnF_C2H2 402 424 3.89e-3 SMART
ZnF_C2H2 434 457 2.75e-3 SMART
ZnF_C2H2 468 488 1.88e2 SMART
ZnF_C2H2 495 517 5.42e-2 SMART
ZnF_C2H2 522 544 1.36e-2 SMART
ZnF_C2H2 571 593 6.23e-2 SMART
ZnF_C2H2 598 620 2.75e-3 SMART
low complexity region 642 657 N/A INTRINSIC
ZnF_C2H2 661 684 2.17e-1 SMART
ZnF_C2H2 689 711 3.24e0 SMART
ZnF_C2H2 725 747 1.38e-3 SMART
ZnF_C2H2 753 775 5.67e-5 SMART
ZnF_C2H2 781 803 3.11e-2 SMART
ZnF_C2H2 809 831 8.34e-3 SMART
ZnF_C2H2 837 859 4.79e-3 SMART
ZnF_C2H2 865 888 4.79e-3 SMART
ZnF_C2H2 894 917 5.06e-2 SMART
low complexity region 948 959 N/A INTRINSIC
low complexity region 1148 1170 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000121584
AA Change: D960G

PolyPhen 2 Score 0.504 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000113791
Gene: ENSMUSG00000014039
AA Change: D960G

DomainStartEndE-ValueType
SET 49 165 5.96e-1 SMART
ZnF_C2H2 197 219 3.99e0 SMART
low complexity region 264 277 N/A INTRINSIC
ZnF_C2H2 376 398 3.89e-3 SMART
ZnF_C2H2 408 431 2.75e-3 SMART
ZnF_C2H2 442 462 1.88e2 SMART
ZnF_C2H2 469 491 5.42e-2 SMART
ZnF_C2H2 496 518 1.36e-2 SMART
ZnF_C2H2 545 567 6.23e-2 SMART
ZnF_C2H2 572 594 2.75e-3 SMART
low complexity region 616 631 N/A INTRINSIC
ZnF_C2H2 635 658 2.17e-1 SMART
ZnF_C2H2 663 685 3.24e0 SMART
ZnF_C2H2 699 721 1.38e-3 SMART
ZnF_C2H2 727 749 5.67e-5 SMART
ZnF_C2H2 755 777 3.11e-2 SMART
ZnF_C2H2 783 805 8.34e-3 SMART
ZnF_C2H2 811 833 4.79e-3 SMART
ZnF_C2H2 839 862 4.79e-3 SMART
ZnF_C2H2 868 891 5.06e-2 SMART
low complexity region 922 933 N/A INTRINSIC
low complexity region 1122 1144 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000142295
SMART Domains Protein: ENSMUSP00000120497
Gene: ENSMUSG00000014039

DomainStartEndE-ValueType
SET 49 165 5.96e-1 SMART
low complexity region 230 243 N/A INTRINSIC
ZnF_C2H2 342 364 3.89e-3 SMART
ZnF_C2H2 369 392 2.75e-3 SMART
ZnF_C2H2 403 423 1.88e2 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca14 A G 7: 119,846,184 (GRCm39) T612A probably damaging Het
Acacb G A 5: 114,383,161 (GRCm39) A2115T possibly damaging Het
Adam32 T C 8: 25,388,510 (GRCm39) K398R probably benign Het
Adam9 T A 8: 25,441,002 (GRCm39) I824F possibly damaging Het
Ahnak A G 19: 8,986,395 (GRCm39) I2560V possibly damaging Het
Ank3 G A 10: 69,542,644 (GRCm39) M1I probably null Het
Anks1b T G 10: 90,348,699 (GRCm39) I789S probably damaging Het
Ap2b1 T A 11: 83,241,931 (GRCm39) N641K probably benign Het
Arhgap33 A G 7: 30,228,146 (GRCm39) L412P probably damaging Het
Atp13a3 T A 16: 30,171,095 (GRCm39) M317L possibly damaging Het
B4galt5 A G 2: 167,148,617 (GRCm39) L167P probably damaging Het
Bace2 T C 16: 97,237,998 (GRCm39) I483T possibly damaging Het
C2cd3 A C 7: 100,056,257 (GRCm39) K177T Het
Ccr4 T C 9: 114,322,024 (GRCm39) T14A probably benign Het
Cep250 A T 2: 155,833,472 (GRCm39) H1799L probably benign Het
Cgnl1 T C 9: 71,632,052 (GRCm39) Q433R probably benign Het
Copb1 C T 7: 113,836,591 (GRCm39) V384M probably damaging Het
Cyp2c50 T A 19: 40,079,012 (GRCm39) N118K probably benign Het
Cyp4a32 A G 4: 115,459,499 (GRCm39) I78V probably benign Het
Cyth4 A G 15: 78,491,245 (GRCm39) K108R probably benign Het
Dnah1 T C 14: 30,986,896 (GRCm39) H3632R probably benign Het
Dnah3 T C 7: 119,542,856 (GRCm39) I540V probably benign Het
Dock4 A G 12: 40,844,859 (GRCm39) Y1174C probably damaging Het
Drd5 A G 5: 38,477,879 (GRCm39) T291A probably damaging Het
Eeig1 A G 2: 32,448,076 (GRCm39) R62G probably benign Het
Fbn1 T C 2: 125,148,415 (GRCm39) N2611S possibly damaging Het
Fcsk A G 8: 111,622,529 (GRCm39) I133T probably benign Het
Fhod3 A G 18: 25,193,409 (GRCm39) E640G probably damaging Het
Flvcr2 T A 12: 85,852,013 (GRCm39) D522E probably benign Het
Ganc T A 2: 120,272,010 (GRCm39) I556K probably damaging Het
Gjc2 T A 11: 59,067,960 (GRCm39) E174V unknown Het
Gzmd G A 14: 56,368,799 (GRCm39) R32C probably damaging Het
Hltf T A 3: 20,119,556 (GRCm39) H200Q probably benign Het
Ift88 A G 14: 57,717,454 (GRCm39) I559M probably damaging Het
Ighv1-62-1 C A 12: 115,350,322 (GRCm39) C115F probably damaging Het
Impdh2 A G 9: 108,440,636 (GRCm39) N279S possibly damaging Het
Itpr1 T C 6: 108,494,581 (GRCm39) probably null Het
Kansl1l T C 1: 66,840,787 (GRCm39) N171S possibly damaging Het
Kif14 T A 1: 136,396,491 (GRCm39) C266S probably benign Het
Kif19b A G 5: 140,447,943 (GRCm39) T137A probably damaging Het
Lrriq1 A C 10: 103,051,834 (GRCm39) V306G probably damaging Het
Mast4 G A 13: 103,470,508 (GRCm39) R65W possibly damaging Het
Mex3d T C 10: 80,223,091 (GRCm39) D55G Het
Mrps27 A T 13: 99,547,788 (GRCm39) K233* probably null Het
Myo1f A G 17: 33,798,902 (GRCm39) N189S probably damaging Het
Nbn A T 4: 15,991,190 (GRCm39) K729N probably benign Het
Or1e35 T C 11: 73,798,058 (GRCm39) S87G probably benign Het
Or8k35 C A 2: 86,424,498 (GRCm39) V225F possibly damaging Het
Pgghg T C 7: 140,525,633 (GRCm39) S479P Het
Plaat5 A G 19: 7,591,946 (GRCm39) T121A probably benign Het
Polr1e A C 4: 45,029,340 (GRCm39) H315P probably damaging Het
Pou6f2 A G 13: 18,299,874 (GRCm39) V595A Het
Prkcz A T 4: 155,353,516 (GRCm39) M460K probably benign Het
Prkd2 G T 7: 16,591,730 (GRCm39) R587L probably benign Het
Prkn C A 17: 12,073,748 (GRCm39) N355K possibly damaging Het
Rabep1 C A 11: 70,830,815 (GRCm39) T829N probably damaging Het
Rptn A G 3: 93,303,261 (GRCm39) E198G probably benign Het
Ryr2 A T 13: 11,680,799 (GRCm39) I3182N possibly damaging Het
Sectm1a T A 11: 120,960,708 (GRCm39) I36F possibly damaging Het
Sez6l T C 5: 112,621,346 (GRCm39) S243G probably benign Het
Spata31h1 T C 10: 82,122,876 (GRCm39) E3378G probably benign Het
Taf2 T A 15: 54,925,537 (GRCm39) H235L probably benign Het
Tbc1d7 T C 13: 43,306,493 (GRCm39) Q161R probably benign Het
Tfcp2 T C 15: 100,416,468 (GRCm39) T271A possibly damaging Het
Thrsp G T 7: 97,066,295 (GRCm39) T139K probably damaging Het
Timm10 T A 2: 84,660,333 (GRCm39) *91R probably null Het
Tlr11 T A 14: 50,599,598 (GRCm39) I528N possibly damaging Het
Tnnt2 T A 1: 135,779,444 (GRCm39) L278Q probably damaging Het
Toe1 A T 4: 116,664,715 (GRCm39) M1K probably null Het
Trpv5 G A 6: 41,652,242 (GRCm39) R148* probably null Het
Ttll13 A C 7: 79,903,911 (GRCm39) K280Q probably damaging Het
Ttn A G 2: 76,783,550 (GRCm39) V860A unknown Het
Txnip T C 3: 96,466,991 (GRCm39) Y222H probably damaging Het
Ubr4 G A 4: 139,170,725 (GRCm39) S1600N probably damaging Het
Uhrf1 T C 17: 56,622,193 (GRCm39) Y364H probably damaging Het
Unc5a A T 13: 55,138,833 (GRCm39) T71S probably damaging Het
Vmn1r123 A T 7: 20,896,537 (GRCm39) Y143F possibly damaging Het
Vmn1r180 T A 7: 23,651,891 (GRCm39) I18N probably damaging Het
Washc2 A G 6: 116,185,168 (GRCm39) M1V probably null Het
Zfp174 C A 16: 3,666,111 (GRCm39) H125Q probably benign Het
Zfpl1 T C 19: 6,131,943 (GRCm39) H227R possibly damaging Het
Other mutations in Prdm15
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00973:Prdm15 APN 16 97,607,367 (GRCm39) splice site probably benign
IGL01325:Prdm15 APN 16 97,607,717 (GRCm39) missense probably damaging 1.00
IGL02195:Prdm15 APN 16 97,637,029 (GRCm39) missense probably damaging 1.00
IGL02473:Prdm15 APN 16 97,638,805 (GRCm39) splice site probably null
IGL02502:Prdm15 APN 16 97,640,539 (GRCm39) missense probably damaging 1.00
IGL02604:Prdm15 APN 16 97,623,142 (GRCm39) missense probably benign
R0408:Prdm15 UTSW 16 97,636,986 (GRCm39) missense possibly damaging 0.92
R0437:Prdm15 UTSW 16 97,613,759 (GRCm39) missense probably benign 0.00
R0497:Prdm15 UTSW 16 97,595,534 (GRCm39) missense possibly damaging 0.63
R0590:Prdm15 UTSW 16 97,598,961 (GRCm39) missense possibly damaging 0.95
R0630:Prdm15 UTSW 16 97,638,907 (GRCm39) missense probably null 1.00
R0661:Prdm15 UTSW 16 97,630,882 (GRCm39) missense probably benign 0.34
R0718:Prdm15 UTSW 16 97,613,833 (GRCm39) missense possibly damaging 0.89
R1144:Prdm15 UTSW 16 97,609,908 (GRCm39) missense probably damaging 1.00
R1240:Prdm15 UTSW 16 97,638,800 (GRCm39) missense probably damaging 0.98
R1605:Prdm15 UTSW 16 97,640,506 (GRCm39) missense probably damaging 1.00
R1908:Prdm15 UTSW 16 97,638,885 (GRCm39) missense probably benign 0.27
R2081:Prdm15 UTSW 16 97,604,980 (GRCm39) nonsense probably null
R2208:Prdm15 UTSW 16 97,600,464 (GRCm39) splice site probably null
R3787:Prdm15 UTSW 16 97,598,945 (GRCm39) missense probably benign 0.00
R3890:Prdm15 UTSW 16 97,600,771 (GRCm39) missense probably damaging 1.00
R4326:Prdm15 UTSW 16 97,607,715 (GRCm39) missense probably damaging 1.00
R4728:Prdm15 UTSW 16 97,622,986 (GRCm39) missense probably benign 0.04
R4952:Prdm15 UTSW 16 97,607,277 (GRCm39) missense probably damaging 0.99
R4998:Prdm15 UTSW 16 97,595,689 (GRCm39) missense probably damaging 0.97
R5225:Prdm15 UTSW 16 97,609,875 (GRCm39) missense probably damaging 1.00
R5505:Prdm15 UTSW 16 97,618,183 (GRCm39) missense possibly damaging 0.76
R5628:Prdm15 UTSW 16 97,600,823 (GRCm39) missense probably damaging 0.98
R5721:Prdm15 UTSW 16 97,608,296 (GRCm39) missense possibly damaging 0.74
R5873:Prdm15 UTSW 16 97,609,889 (GRCm39) missense probably damaging 1.00
R5980:Prdm15 UTSW 16 97,613,770 (GRCm39) nonsense probably null
R6311:Prdm15 UTSW 16 97,600,255 (GRCm39) missense probably null 0.08
R6540:Prdm15 UTSW 16 97,637,005 (GRCm39) missense probably benign 0.13
R7053:Prdm15 UTSW 16 97,595,742 (GRCm39) nonsense probably null
R7468:Prdm15 UTSW 16 97,636,842 (GRCm39) nonsense probably null
R7473:Prdm15 UTSW 16 97,623,046 (GRCm39) missense possibly damaging 0.68
R7762:Prdm15 UTSW 16 97,619,473 (GRCm39) missense probably benign 0.00
R7911:Prdm15 UTSW 16 97,613,792 (GRCm39) missense probably benign 0.35
R8053:Prdm15 UTSW 16 97,636,807 (GRCm39) missense probably benign 0.17
R8127:Prdm15 UTSW 16 97,638,910 (GRCm39) missense probably benign 0.24
R8213:Prdm15 UTSW 16 97,608,260 (GRCm39) missense probably damaging 1.00
R8708:Prdm15 UTSW 16 97,618,066 (GRCm39) missense unknown
R8768:Prdm15 UTSW 16 97,638,888 (GRCm39) missense probably benign
R9000:Prdm15 UTSW 16 97,595,470 (GRCm39) missense probably benign 0.03
R9513:Prdm15 UTSW 16 97,607,704 (GRCm39) missense probably damaging 1.00
R9583:Prdm15 UTSW 16 97,623,142 (GRCm39) missense probably benign
RF002:Prdm15 UTSW 16 97,600,829 (GRCm39) missense probably damaging 1.00
RF021:Prdm15 UTSW 16 97,609,956 (GRCm39) missense probably damaging 1.00
Z1177:Prdm15 UTSW 16 97,618,159 (GRCm39) missense possibly damaging 0.54
Predicted Primers PCR Primer
(F):5'- ATGGACACATGATAGGACGC -3'
(R):5'- CTATGACAGCTTGATGCCCTG -3'

Sequencing Primer
(F):5'- CAAGTCCAGAAGCGCTGC -3'
(R):5'- CCCTGTGTCTATGTCTAAGGCAG -3'
Posted On 2019-06-26