Mutagenetix > Incidental Mutation

Incidental Mutation 'R7243:Thnsl1'

563330

Institutional Source

Beutler Lab

Gene Symbol

Thnsl1

Ensembl Gene

ENSMUSG00000048550

Gene Name

threonine synthase-like 1 (bacterial)

Synonyms

MMRRC Submission

045307-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.083) question?

Stock #

R7243 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

21210535-21219820 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 21217658 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 471 (I471V)

Ref Sequence

ENSEMBL: ENSMUSP00000052452 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054591] [ENSMUST00000102951] [ENSMUST00000102952] [ENSMUST00000138914] [ENSMUST00000138965]

AlphaFold

Q8BH55

Predicted Effect

probably damaging
Transcript: ENSMUST00000054591
AA Change: I471V

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000052452
Gene: ENSMUSG00000048550
AA Change: I471V

Domain	Start	End	E-Value	Type
Pfam:AAA_17	57	202	2e-8	PFAM
Pfam:SKI	64	221	5.8e-40	PFAM
Pfam:Thr_synth_N	230	318	3.2e-16	PFAM
Pfam:PALP	326	659	2.2e-9	PFAM
low complexity region	684	701	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102951

SMART Domains

Protein: ENSMUSP00000100016
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	158	2e-27	PDB
SCOP:d1kl7a_	2	214	7e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102952

SMART Domains

Protein: ENSMUSP00000100017
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	158	2e-27	PDB
SCOP:d1kl7a_	2	214	7e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000138914

Predicted Effect

probably benign
Transcript: ENSMUST00000138965

SMART Domains

Protein: ENSMUSP00000115186
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	93	5e-16	PDB

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (73/74)

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acap1	G	A	11: 69,781,297 (GRCm39)	H103Y	probably benign	Het
Adamdec1	A	G	14: 68,809,203 (GRCm39)	M253T	probably benign	Het
Alox15	C	A	11: 70,241,540 (GRCm39)	G114C	probably null	Het
Aox3	G	T	1: 58,177,466 (GRCm39)	G227V	unknown	Het
Atp8a2	A	T	14: 59,885,291 (GRCm39)	N1144K	probably benign	Het
Cacna1c	C	T	6: 118,614,690 (GRCm39)		probably null	Het
Cog6	A	T	3: 52,909,736 (GRCm39)	W314R	probably damaging	Het
Col5a2	A	G	1: 45,415,320 (GRCm39)	I1473T	probably benign	Het
Csmd1	T	A	8: 15,965,357 (GRCm39)	D3218V	probably damaging	Het
Cyp3a11	A	G	5: 145,795,613 (GRCm39)	M446T	probably damaging	Het
Dhps	A	G	8: 85,801,567 (GRCm39)	Y340C	probably benign	Het
Dnah7b	A	G	1: 46,122,914 (GRCm39)	N108S	probably benign	Het
Dnajb1	C	T	8: 84,337,393 (GRCm39)	P323L	probably damaging	Het
Dspp	TGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCAACAGCAGTGACAGCAG	TGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCAACAGCAGTGACAGCAG	5: 104,326,227 (GRCm39)		probably benign	Het
Dync2h1	G	T	9: 7,102,405 (GRCm39)	T2665K	possibly damaging	Het
Etv1	C	T	12: 38,907,045 (GRCm39)	S349L	probably benign	Het
Fam171a1	A	T	2: 3,119,653 (GRCm39)	T21S	probably benign	Het
Fbh1	T	A	2: 11,756,336 (GRCm39)	T749S	probably benign	Het
Fcho2	T	C	13: 98,891,724 (GRCm39)	D346G	possibly damaging	Het
Fcrl5	A	G	3: 87,349,552 (GRCm39)	H109R	probably benign	Het
Fstl1	A	G	16: 37,647,088 (GRCm39)	S153G	probably benign	Het
Fyb1	T	C	15: 6,673,180 (GRCm39)	F605L	probably benign	Het
Gcat	T	A	15: 78,921,063 (GRCm39)	M363K	possibly damaging	Het
Gm10604	T	C	4: 11,980,113 (GRCm39)	T64A	unknown	Het
Grin2d	A	G	7: 45,515,552 (GRCm39)	L147P	probably damaging	Het
Ift88	A	T	14: 57,667,993 (GRCm39)		probably null	Het
Ighg1	A	T	12: 113,294,066 (GRCm39)	C26S		Het
Ing2	A	G	8: 48,127,574 (GRCm39)	S48P	probably damaging	Het
Kat6a	C	T	8: 23,428,791 (GRCm39)	T1382I	probably benign	Het
Kdm1a	A	G	4: 136,279,265 (GRCm39)	V765A	probably damaging	Het
Klk1b26	T	C	7: 43,665,691 (GRCm39)	S168P	not run	Het
Klk1b26	A	G	7: 43,666,337 (GRCm39)	N260S	probably damaging	Het
Lama3	G	A	18: 12,552,902 (GRCm39)	G438D	probably damaging	Het
Larp6	T	A	9: 60,620,569 (GRCm39)	D27E	probably benign	Het
Lrba	T	A	3: 86,658,823 (GRCm39)		probably null	Het
Lrig2	A	T	3: 104,404,883 (GRCm39)		probably null	Het
Megf9	T	C	4: 70,353,708 (GRCm39)	E366G	probably benign	Het
Mob1b	T	A	5: 88,891,304 (GRCm39)	D52E	probably damaging	Het
Ndufb3	A	T	1: 58,630,282 (GRCm39)	H11L	unknown	Het
Odc1	T	G	12: 17,600,058 (GRCm39)	Y407*	probably null	Het
Ogfr	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	GGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCCAAAGCCAGGTGG	2: 180,237,059 (GRCm39)		probably benign	Het
Opa1	A	G	16: 29,405,814 (GRCm39)	I126M	probably benign	Het
Or2t47	T	C	11: 58,442,227 (GRCm39)	I279M	probably damaging	Het
Or3a1b	T	A	11: 74,012,559 (GRCm39)	V148E	probably damaging	Het
Or51a10	A	G	7: 103,698,962 (GRCm39)	Y200H	probably damaging	Het
Or51f5	A	T	7: 102,430,865 (GRCm39)	T61S	probably benign	Het
Pcca	A	G	14: 123,114,186 (GRCm39)	H633R	probably benign	Het
Pcdhb22	A	G	18: 37,653,685 (GRCm39)	R461G	probably benign	Het
Pcf11	A	T	7: 92,309,268 (GRCm39)	D647E	probably damaging	Het
Plscr1l1	A	G	9: 92,225,726 (GRCm39)	Y16C	probably damaging	Het
Plxnd1	T	A	6: 115,949,468 (GRCm39)	I773F	probably benign	Het
Prl8a1	A	T	13: 27,766,086 (GRCm39)	L3Q	probably damaging	Het
Psg17	C	A	7: 18,552,640 (GRCm39)	G212C	probably damaging	Het
Ptbp2	G	T	3: 119,546,761 (GRCm39)	N40K	possibly damaging	Het
Ptprj	T	C	2: 90,276,765 (GRCm39)	H1102R	probably damaging	Het
Rbfox3	T	C	11: 118,404,100 (GRCm39)	Y33C	probably damaging	Het
Ros1	T	A	10: 51,999,477 (GRCm39)	N1158Y	probably damaging	Het
Rpgrip1l	T	C	8: 91,996,751 (GRCm39)	I710V	probably benign	Het
Scn9a	A	G	2: 66,370,874 (GRCm39)	F569L	probably damaging	Het
Slc12a4	A	T	8: 106,680,552 (GRCm39)	M190K	probably damaging	Het
Slc22a20	G	A	19: 6,021,599 (GRCm39)	R468C	probably damaging	Het
Slc45a2	T	A	15: 11,023,436 (GRCm39)	Y347N	possibly damaging	Het
Slc4a10	A	G	2: 62,134,206 (GRCm39)	Y974C	probably damaging	Het
Snap47	A	G	11: 59,319,548 (GRCm39)	S197P	probably benign	Het
Snph	T	C	2: 151,436,173 (GRCm39)	S252G	probably damaging	Het
Spns2	A	T	11: 72,347,686 (GRCm39)	W335R	probably damaging	Het
Tmprss11f	C	A	5: 86,677,975 (GRCm39)	G265C	probably damaging	Het
Tnn	C	T	1: 159,934,687 (GRCm39)	R1242H	probably benign	Het
Tsc2	T	C	17: 24,818,604 (GRCm39)	R1412G	probably benign	Het
Tsc22d2	G	T	3: 58,323,884 (GRCm39)	V259F	unknown	Het
Ttll13	A	C	7: 79,903,911 (GRCm39)	K280Q	probably damaging	Het
Wls	A	T	3: 159,615,402 (GRCm39)	I306F	possibly damaging	Het
Zfp566	A	G	7: 29,777,701 (GRCm39)	V160A	probably benign	Het
Zfyve28	T	C	5: 34,356,219 (GRCm39)	T761A	probably damaging	Het
Zswim8	G	A	14: 20,764,436 (GRCm39)	R602Q	probably damaging	Het

Other mutations in Thnsl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00160:Thnsl1	APN	2	21,217,260 (GRCm39)	missense	possibly damaging	0.47
IGL00756:Thnsl1	APN	2	21,217,423 (GRCm39)	missense	probably benign	0.02
IGL00952:Thnsl1	APN	2	21,216,767 (GRCm39)	missense	possibly damaging	0.89
IGL01020:Thnsl1	APN	2	21,217,305 (GRCm39)	missense	probably damaging	0.99
IGL01350:Thnsl1	APN	2	21,217,011 (GRCm39)	missense	probably benign	0.30
IGL01476:Thnsl1	APN	2	21,216,970 (GRCm39)	missense	probably benign	0.00
IGL01548:Thnsl1	APN	2	21,217,943 (GRCm39)	missense	probably damaging	1.00
IGL01916:Thnsl1	APN	2	21,217,476 (GRCm39)	missense	possibly damaging	0.66
IGL02176:Thnsl1	APN	2	21,216,665 (GRCm39)	missense	possibly damaging	0.69
IGL03001:Thnsl1	APN	2	21,216,455 (GRCm39)	missense	probably damaging	0.99
IGL03219:Thnsl1	APN	2	21,217,217 (GRCm39)	missense	probably benign	0.14
IGL03386:Thnsl1	APN	2	21,216,359 (GRCm39)	missense	probably benign	0.01
R0684:Thnsl1	UTSW	2	21,216,477 (GRCm39)	missense	probably benign	0.02
R0738:Thnsl1	UTSW	2	21,218,173 (GRCm39)	missense	probably damaging	1.00
R1119:Thnsl1	UTSW	2	21,217,857 (GRCm39)	missense	probably damaging	1.00
R1121:Thnsl1	UTSW	2	21,216,975 (GRCm39)	missense	probably benign	0.00
R2150:Thnsl1	UTSW	2	21,217,344 (GRCm39)	missense	probably benign	0.08
R3545:Thnsl1	UTSW	2	21,217,438 (GRCm39)	missense	probably benign	0.01
R3547:Thnsl1	UTSW	2	21,217,438 (GRCm39)	missense	probably benign	0.01
R4244:Thnsl1	UTSW	2	21,217,059 (GRCm39)	missense	probably benign
R4245:Thnsl1	UTSW	2	21,217,059 (GRCm39)	missense	probably benign
R4510:Thnsl1	UTSW	2	21,217,236 (GRCm39)	missense	probably damaging	0.99
R4511:Thnsl1	UTSW	2	21,217,236 (GRCm39)	missense	probably damaging	0.99
R4678:Thnsl1	UTSW	2	21,216,352 (GRCm39)	splice site	probably null
R4753:Thnsl1	UTSW	2	21,218,175 (GRCm39)	missense	probably damaging	1.00
R4795:Thnsl1	UTSW	2	21,216,856 (GRCm39)	nonsense	probably null
R4796:Thnsl1	UTSW	2	21,216,856 (GRCm39)	nonsense	probably null
R5584:Thnsl1	UTSW	2	21,218,223 (GRCm39)	missense	probably damaging	1.00
R5586:Thnsl1	UTSW	2	21,217,201 (GRCm39)	nonsense	probably null
R5682:Thnsl1	UTSW	2	21,216,879 (GRCm39)	missense	possibly damaging	0.69
R5718:Thnsl1	UTSW	2	21,216,811 (GRCm39)	missense	possibly damaging	0.54
R6159:Thnsl1	UTSW	2	21,217,016 (GRCm39)	nonsense	probably null
R6795:Thnsl1	UTSW	2	21,218,303 (GRCm39)	nonsense	probably null
R7084:Thnsl1	UTSW	2	21,217,141 (GRCm39)	missense	possibly damaging	0.69
R7153:Thnsl1	UTSW	2	21,217,764 (GRCm39)	missense	possibly damaging	0.64
R7265:Thnsl1	UTSW	2	21,217,269 (GRCm39)	missense	probably damaging	1.00
R7481:Thnsl1	UTSW	2	21,216,599 (GRCm39)	missense	probably benign	0.00
R8005:Thnsl1	UTSW	2	21,216,755 (GRCm39)	missense	probably benign
R8223:Thnsl1	UTSW	2	21,216,924 (GRCm39)	missense	probably benign	0.45
R8331:Thnsl1	UTSW	2	21,216,985 (GRCm39)	missense	probably benign
R8548:Thnsl1	UTSW	2	21,217,733 (GRCm39)	missense	possibly damaging	0.75
R8798:Thnsl1	UTSW	2	21,217,209 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ACGGAGTTAGTGATTTCCAGAAAG -3'
(R):5'- GAAGTCAGTCAAAACGTGGTTCTG -3'

Sequencing Primer
(F):5'- TTTCCAGAAAGCAGAGATAATTGGC -3'
(R):5'- TCAAAACGTGGTTCTGATTAGAGGC -3'

Posted On

2019-06-26