Incidental Mutation 'R7246:Lamtor5'
ID 563526
Institutional Source Beutler Lab
Gene Symbol Lamtor5
Ensembl Gene ENSMUSG00000087260
Gene Name late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Synonyms 1110003H18Rik, Hbxip
MMRRC Submission 045309-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7246 (G1)
Quality Score 225.009
Status Validated
Chromosome 3
Chromosomal Location 107186174-107191398 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 107189336 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Valine at position 124 (D124V)
Ref Sequence ENSEMBL: ENSMUSP00000129012 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000145735] [ENSMUST00000199317]
AlphaFold Q9D1L9
Predicted Effect probably damaging
Transcript: ENSMUST00000145735
AA Change: D124V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000129012
Gene: ENSMUSG00000087260
AA Change: D124V

DomainStartEndE-ValueType
Pfam:LAMTOR5 55 142 2e-36 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000199317
AA Change: D70V

PolyPhen 2 Score 0.921 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000143494
Gene: ENSMUSG00000087260
AA Change: D70V

DomainStartEndE-ValueType
Pfam:LAMTOR5 1 88 2.1e-37 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency 97% (74/76)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that specifically complexes with the C-terminus of hepatitis B virus X protein (HBx). The function of this protein is to negatively regulate HBx activity and thus to alter the replication life cycle of the virus. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4921524L21Rik T A 18: 6,635,902 (GRCm39) S318R probably damaging Het
Abce1 A T 8: 80,429,698 (GRCm39) N74K probably damaging Het
Akr1b7 T A 6: 34,392,404 (GRCm39) D72E probably benign Het
Amer3 T A 1: 34,625,809 (GRCm39) I16N possibly damaging Het
Atp6v0d1 T C 8: 106,257,606 (GRCm39) N108D probably damaging Het
Avpr1b T C 1: 131,528,008 (GRCm39) V177A probably damaging Het
B020011L13Rik A T 1: 117,728,969 (GRCm39) K159* probably null Het
Bpifb1 T C 2: 154,049,012 (GRCm39) L172P probably damaging Het
Brca1 G A 11: 101,414,204 (GRCm39) T1310I probably benign Het
C130074G19Rik C A 1: 184,615,166 (GRCm39) R8L probably damaging Het
Ccdc178 T C 18: 22,242,811 (GRCm39) H268R possibly damaging Het
Cdc42ep5 A G 7: 4,154,473 (GRCm39) V105A possibly damaging Het
Cntn4 T C 6: 106,483,180 (GRCm39) L245P probably damaging Het
Crtac1 T C 19: 42,276,365 (GRCm39) E521G probably benign Het
Cts7 T A 13: 61,503,394 (GRCm39) N190I probably damaging Het
Cul7 A G 17: 46,972,993 (GRCm39) E1368G probably benign Het
Dhrs7l A T 12: 72,666,266 (GRCm39) M89K possibly damaging Het
Dpp10 G A 1: 123,262,106 (GRCm39) P759S probably damaging Het
Etf1 A G 18: 35,064,964 (GRCm39) S11P unknown Het
Exd2 G T 12: 80,527,309 (GRCm39) L167F probably damaging Het
Exoc8 T A 8: 125,623,156 (GRCm39) R404* probably null Het
Fat2 T C 11: 55,187,208 (GRCm39) T1213A probably benign Het
Fgfr2 T C 7: 129,844,136 (GRCm39) Het
Gtf3c1 T A 7: 125,268,266 (GRCm39) Het
Id2 T A 12: 25,145,820 (GRCm39) I64F probably damaging Het
Idh3a G T 9: 54,499,756 (GRCm39) A75S probably damaging Het
Ift70a2 A G 2: 75,808,023 (GRCm39) L163P probably damaging Het
Itgb8 C G 12: 119,131,785 (GRCm39) G620A probably damaging Het
Itih5 T A 2: 10,191,873 (GRCm39) probably null Het
Mast4 T C 13: 102,930,511 (GRCm39) E439G probably damaging Het
Meltf T G 16: 31,713,680 (GRCm39) L641R probably damaging Het
Mesd G T 7: 83,541,420 (GRCm39) probably benign Het
Nfia C T 4: 97,953,579 (GRCm39) P439L probably damaging Het
Nptx1 A T 11: 119,435,416 (GRCm39) probably null Het
Or1o3 A T 17: 37,573,905 (GRCm39) C217S probably benign Het
Or2j6 T A 7: 139,980,061 (GRCm39) R299S probably benign Het
Or5t7 A G 2: 86,507,633 (GRCm39) F15L probably benign Het
Or7g29 G A 9: 19,286,761 (GRCm39) Q139* probably null Het
Pdss2 T A 10: 43,248,172 (GRCm39) H225Q probably benign Het
Pik3r5 C A 11: 68,383,769 (GRCm39) S529R probably benign Het
Plxna2 T C 1: 194,326,590 (GRCm39) S175P possibly damaging Het
Pom121l12 T A 11: 14,549,551 (GRCm39) W86R probably benign Het
Ppid C T 3: 79,498,740 (GRCm39) probably benign Het
Pramel7 T A 2: 87,322,509 (GRCm39) D85V probably damaging Het
Prune2 C T 19: 17,098,732 (GRCm39) T1412I probably damaging Het
Ptprd T C 4: 76,046,913 (GRCm39) Y204C probably damaging Het
Rasgrp1 G A 2: 117,168,835 (GRCm39) R48* probably null Het
Rbks A G 5: 31,805,127 (GRCm39) S246P possibly damaging Het
Rnf113a2 G T 12: 84,464,451 (GRCm39) M114I possibly damaging Het
Rsf1 GCGGCGGCG GCGGCGGCGCCGGCGGCG 7: 97,229,129 (GRCm39) probably benign Het
Scara3 A G 14: 66,169,093 (GRCm39) S175P probably damaging Het
Slc4a4 T A 5: 89,270,262 (GRCm39) L261Q probably damaging Het
Sparcl1 T C 5: 104,233,023 (GRCm39) I593V probably benign Het
Suclg1 C T 6: 73,253,696 (GRCm39) H115Y unknown Het
Syde2 T A 3: 145,694,510 (GRCm39) C253S probably benign Het
Tecrl A T 5: 83,427,182 (GRCm39) I322N probably damaging Het
Tesmin C T 19: 3,456,965 (GRCm39) A428V probably damaging Het
Thbd T A 2: 148,248,405 (GRCm39) T488S probably benign Het
Tln2 A T 9: 67,170,261 (GRCm39) V876E probably damaging Het
Ttll13 A C 7: 79,903,911 (GRCm39) K280Q probably damaging Het
Unc13b T A 4: 43,172,910 (GRCm39) I1246K unknown Het
Usp47 T A 7: 111,715,116 (GRCm39) Het
Vmn1r192 C T 13: 22,371,944 (GRCm39) R92Q probably damaging Het
Vmn2r111 T C 17: 22,767,695 (GRCm39) T601A probably damaging Het
Vmn2r51 A G 7: 9,836,428 (GRCm39) F118L probably benign Het
Vmn2r74 T A 7: 85,605,173 (GRCm39) I492L probably benign Het
Vmn2r93 C T 17: 18,546,012 (GRCm39) T628I possibly damaging Het
Vps13d C T 4: 144,882,620 (GRCm39) R991K Het
Wdr5b T C 16: 35,862,306 (GRCm39) S142P probably damaging Het
Zfp428 G T 7: 24,215,069 (GRCm39) probably null Het
Other mutations in Lamtor5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01552:Lamtor5 APN 3 107,186,324 (GRCm39) missense probably benign 0.03
R0419:Lamtor5 UTSW 3 107,189,227 (GRCm39) missense probably damaging 0.96
R4246:Lamtor5 UTSW 3 107,186,354 (GRCm39) missense probably benign
R5433:Lamtor5 UTSW 3 107,189,323 (GRCm39) missense probably benign 0.09
R9277:Lamtor5 UTSW 3 107,186,404 (GRCm39) missense probably benign 0.39
Predicted Primers PCR Primer
(F):5'- TTTCTCACTAATGGACTCAGCTG -3'
(R):5'- TTGGAGTGGCAAACTGATAGTTC -3'

Sequencing Primer
(F):5'- TACCAGGTGAGAGAGATCCTTTC -3'
(R):5'- CTCTGTGGTGCATTGACT -3'
Posted On 2019-06-26