Mutagenetix > Incidental Mutation

Incidental Mutation 'R7248:Traf5'

563659

Institutional Source

Beutler Lab

Gene Symbol

Traf5

Ensembl Gene

ENSMUSG00000026637

Gene Name

TNF receptor-associated factor 5

Synonyms

MMRRC Submission

045311-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7248 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

191729166-191776868 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 191743432 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 174 (D174V)

Ref Sequence

ENSEMBL: ENSMUSP00000082710 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000085573] [ENSMUST00000195815]

AlphaFold

P70191

Predicted Effect

probably benign
Transcript: ENSMUST00000085573
AA Change: D174V

PolyPhen 2 Score 0.197 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000082710
Gene: ENSMUSG00000026637
AA Change: D174V

Domain	Start	End	E-Value	Type
RING	45	84	1.74e-4	SMART
Pfam:zf-TRAF	128	183	4.8e-21	PFAM
Pfam:zf-TRAF	183	241	4.2e-19	PFAM
MATH	402	525	2.42e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195815
AA Change: D49V

PolyPhen 2 Score 0.354 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000141931
Gene: ENSMUSG00000026637
AA Change: D49V

Domain	Start	End	E-Value	Type
Pfam:zf-TRAF	3	58	1.7e-18	PFAM
Pfam:zf-TRAF	58	116	1.6e-16	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

97% (75/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The scaffold protein encoded by this gene is a member of the tumor necrosis factor receptor-associated factor (TRAF) protein family and contains a meprin and TRAF homology (MATH) domain, a RING-type zinc finger, and two TRAF-type zinc fingers. TRAF proteins are associated with, and mediate signal transduction from members of the TNF receptor superfamily. This protein is one of the components of a multiple protein complex which binds to tumor necrosis factor (TNF) receptor cytoplasmic domains and mediates TNF-induced activation. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2016]
PHENOTYPE: Homozygous null mice show defects in lymphocyte activation but are otherwise viable and develop normally. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700006A11Rik	A	G	3: 124,207,959 (GRCm39)		probably null	Het
Aldh16a1	A	G	7: 44,795,018 (GRCm39)	Y484H	probably damaging	Het
Arhgap26	T	C	18: 39,439,907 (GRCm39)		probably null	Het
Atxn7l1	A	G	12: 33,417,194 (GRCm39)	T452A	probably benign	Het
Baz1a	C	T	12: 54,947,293 (GRCm39)	E1119K	probably damaging	Het
Btaf1	A	T	19: 36,922,714 (GRCm39)	E39D	possibly damaging	Het
Bud13	G	T	9: 46,194,413 (GRCm39)	E29*	probably null	Het
Ccdc150	C	T	1: 54,344,057 (GRCm39)	T530I	probably benign	Het
Chd6	G	A	2: 160,803,199 (GRCm39)	Q2160*	probably null	Het
Cluap1	T	A	16: 3,737,364 (GRCm39)	I172N	possibly damaging	Het
Cnot2	T	C	10: 116,334,278 (GRCm39)	N329S	probably benign	Het
Cog4	A	T	8: 111,608,834 (GRCm39)	T175S	unknown	Het
Coq7	C	A	7: 118,128,897 (GRCm39)	R46L	probably benign	Het
D630045J12Rik	A	T	6: 38,145,198 (GRCm39)	V1276E	probably damaging	Het
Dcaf15	A	G	8: 84,829,394 (GRCm39)	V116A	possibly damaging	Het
Ddr2	C	T	1: 169,822,198 (GRCm39)	V417I	probably benign	Het
Defa25	G	A	8: 21,575,216 (GRCm39)	C65Y	probably damaging	Het
Dhx38	T	C	8: 110,285,559 (GRCm39)	T425A	probably benign	Het
Diaph1	T	C	18: 38,022,829 (GRCm39)	T782A	probably benign	Het
Dnah7b	T	A	1: 46,181,245 (GRCm39)	M1044K	possibly damaging	Het
Dusp16	G	A	6: 134,695,940 (GRCm39)	T297M	probably benign	Het
Esyt2	A	G	12: 116,305,858 (GRCm39)	N363D	probably damaging	Het
Fasl	C	T	1: 161,615,760 (GRCm39)	C32Y	possibly damaging	Het
Flg	T	C	3: 93,189,041 (GRCm39)	V137A	probably benign	Het
Gm57858	T	A	3: 36,080,086 (GRCm39)	T224S	probably benign	Het
Gpr150	G	A	13: 76,204,126 (GRCm39)	A273V	probably benign	Het
Grk5	A	G	19: 60,879,045 (GRCm39)	T10A	probably benign	Het
Hivep2	A	G	10: 14,006,909 (GRCm39)	K1169R	possibly damaging	Het
Ido2	A	C	8: 25,030,657 (GRCm39)	Y224*	probably null	Het
Ido2	A	G	8: 25,038,839 (GRCm39)	I149T	probably damaging	Het
Iqca1l	C	T	5: 24,749,269 (GRCm39)	S743N	probably benign	Het
Kctd2	A	G	11: 115,312,845 (GRCm39)	T126A	possibly damaging	Het
Khdc4	T	C	3: 88,600,886 (GRCm39)	S228P	probably damaging	Het
Kif1a	T	C	1: 92,969,305 (GRCm39)	D1090G	probably benign	Het
Klrb1a	A	T	6: 128,586,697 (GRCm39)	H222Q	possibly damaging	Het
Kndc1	A	C	7: 139,500,699 (GRCm39)	H688P	probably damaging	Het
Lrriq1	C	A	10: 103,059,611 (GRCm39)	V141F	possibly damaging	Het
Malrd1	A	G	2: 16,106,722 (GRCm39)	I1845V	unknown	Het
Mob3c	G	A	4: 115,688,881 (GRCm39)	R138H	probably benign	Het
Mre11a	T	A	9: 14,723,209 (GRCm39)	D394E	possibly damaging	Het
Myh7b	A	T	2: 155,464,106 (GRCm39)	I536F	probably damaging	Het
Nacad	T	A	11: 6,548,589 (GRCm39)	K1382*	probably null	Het
Ncor1	T	C	11: 62,275,598 (GRCm39)	K128R	possibly damaging	Het
Or10am5	T	C	7: 6,517,520 (GRCm39)	N303D	probably damaging	Het
Ostn	T	A	16: 27,165,719 (GRCm39)		probably null	Het
Pacs1	G	A	19: 5,189,003 (GRCm39)	T793I	probably damaging	Het
Pcdhb2	T	C	18: 37,429,547 (GRCm39)	S507P	probably damaging	Het
Pde2a	A	G	7: 101,152,597 (GRCm39)	K393E	possibly damaging	Het
Pfkl	T	A	10: 77,825,423 (GRCm39)	N656Y	probably damaging	Het
Phf20	T	A	2: 156,135,331 (GRCm39)		probably null	Het
Plekha6	G	T	1: 133,203,586 (GRCm39)	E550*	probably null	Het
Plxna4	A	T	6: 32,139,095 (GRCm39)	V1691E	probably damaging	Het
Rag1	A	T	2: 101,472,123 (GRCm39)	H1006Q	probably damaging	Het
Rfx4	C	T	10: 84,740,919 (GRCm39)	P679L	probably benign	Het
Ripor2	A	G	13: 24,878,128 (GRCm39)	H301R	probably damaging	Het
Rrp12	A	T	19: 41,871,877 (GRCm39)	I469N	possibly damaging	Het
Serpinb6b	A	G	13: 33,161,559 (GRCm39)	T211A	probably benign	Het
Sf1	A	T	19: 6,426,383 (GRCm39)	H547L	unknown	Het
Slc29a1	T	C	17: 45,903,108 (GRCm39)	D9G	probably damaging	Het
Sptan1	T	A	2: 29,892,311 (GRCm39)	M1075K	probably benign	Het
Syngap1	A	G	17: 27,176,741 (GRCm39)	D474G	probably damaging	Het
Syt16	C	T	12: 74,313,483 (GRCm39)	R470C	probably damaging	Het
Timeless	A	G	10: 128,087,870 (GRCm39)	T1148A	probably benign	Het
Tmem116	A	T	5: 121,601,899 (GRCm39)		probably null	Het
Tmem158	A	T	9: 123,089,390 (GRCm39)	I74N	probably damaging	Het
Trim65	A	T	11: 116,018,534 (GRCm39)	I247N	probably benign	Het
Tsfm	A	T	10: 126,847,500 (GRCm39)	V197E	probably benign	Het
Utrn	A	G	10: 12,604,562 (GRCm39)	C539R	possibly damaging	Het
Vps13a	A	T	19: 16,655,406 (GRCm39)	F1874Y	probably benign	Het
Wdr6	A	G	9: 108,453,238 (GRCm39)	M215T	possibly damaging	Het
Wdr75	T	A	1: 45,856,560 (GRCm39)	W528R	probably damaging	Het
Zc3h7b	A	G	15: 81,655,988 (GRCm39)	D112G	possibly damaging	Het
Zc3hav1	C	T	6: 38,330,911 (GRCm39)	D83N	probably benign	Het
Zfp369	T	A	13: 65,443,931 (GRCm39)	V358E	probably damaging	Het
Zfp946	T	A	17: 22,672,489 (GRCm39)	C29*	probably null	Het
Zng1	A	G	19: 24,898,505 (GRCm39)	S318P	probably damaging	Het

Other mutations in Traf5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00499:Traf5	APN	1	191,741,589 (GRCm39)	missense	possibly damaging	0.95
IGL01462:Traf5	APN	1	191,731,828 (GRCm39)	missense	probably benign
IGL02262:Traf5	APN	1	191,729,636 (GRCm39)	missense	probably damaging	1.00
IGL02579:Traf5	APN	1	191,731,848 (GRCm39)	missense	probably damaging	0.99
IGL03308:Traf5	APN	1	191,729,461 (GRCm39)	missense	probably damaging	0.99
PIT4445001:Traf5	UTSW	1	191,729,768 (GRCm39)	missense
R0028:Traf5	UTSW	1	191,758,421 (GRCm39)	intron	probably benign
R0689:Traf5	UTSW	1	191,729,837 (GRCm39)	missense	probably benign	0.16
R1511:Traf5	UTSW	1	191,731,912 (GRCm39)	missense	probably benign	0.01
R1641:Traf5	UTSW	1	191,729,470 (GRCm39)	missense	probably benign	0.20
R2235:Traf5	UTSW	1	191,738,806 (GRCm39)	missense	probably damaging	1.00
R2246:Traf5	UTSW	1	191,751,190 (GRCm39)	splice site	probably null
R2301:Traf5	UTSW	1	191,729,926 (GRCm39)	missense	probably benign	0.01
R3973:Traf5	UTSW	1	191,729,837 (GRCm39)	missense	probably benign	0.16
R4396:Traf5	UTSW	1	191,729,806 (GRCm39)	missense	probably benign	0.22
R4793:Traf5	UTSW	1	191,729,765 (GRCm39)	missense	probably benign	0.38
R4834:Traf5	UTSW	1	191,751,198 (GRCm39)	missense	probably benign	0.10
R5779:Traf5	UTSW	1	191,729,633 (GRCm39)	missense	probably damaging	1.00
R5795:Traf5	UTSW	1	191,731,807 (GRCm39)	missense	probably benign	0.00
R5843:Traf5	UTSW	1	191,729,446 (GRCm39)	missense	possibly damaging	0.55
R5912:Traf5	UTSW	1	191,730,030 (GRCm39)	intron	probably benign
R5963:Traf5	UTSW	1	191,731,977 (GRCm39)	missense	probably benign	0.06
R6246:Traf5	UTSW	1	191,754,853 (GRCm39)	missense	probably damaging	0.99
R6287:Traf5	UTSW	1	191,731,833 (GRCm39)	missense	probably damaging	1.00
R6455:Traf5	UTSW	1	191,731,887 (GRCm39)	missense	probably benign	0.00
R7452:Traf5	UTSW	1	191,731,792 (GRCm39)	missense
R8147:Traf5	UTSW	1	191,746,984 (GRCm39)	missense	probably damaging	1.00
R9301:Traf5	UTSW	1	191,729,489 (GRCm39)	missense
R9307:Traf5	UTSW	1	191,747,033 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTTTGCAGGATCTCAAACTGC -3'
(R):5'- ACCTCTGAGGCCTTTGTCATTG -3'

Sequencing Primer
(F):5'- CAGACTTGCCTTAGTGCTACGAAG -3'
(R):5'- TGTCATTGTCACAGGACCAC -3'

Posted On

2019-06-26